Strain Fitness in Sphingobium sp. HT1-2 around GFF719

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF717 and GFF718 are separated by 83 nucleotidesGFF718 and GFF719 are separated by 52 nucleotidesGFF719 and GFF720 are separated by 326 nucleotides GFF717 - 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192), at 709,811 to 711,070 GFF717 GFF718 - hypothetical protein, at 711,154 to 711,576 GFF718 GFF719 - hypothetical protein, at 711,629 to 712,138 GFF719 GFF720 - outer membrane protein-like, at 712,465 to 713,025 GFF720 Position (kb) 711 712 713Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 710.634 kb on + strand, within GFF717at 710.642 kb on - strand, within GFF717at 710.679 kb on + strand, within GFF717at 710.687 kb on + strand, within GFF717at 710.693 kb on + strand, within GFF717at 710.693 kb on + strand, within GFF717at 710.693 kb on + strand, within GFF717at 710.693 kb on + strand, within GFF717at 710.693 kb on + strand, within GFF717at 710.698 kb on + strand, within GFF717at 710.698 kb on + strand, within GFF717at 710.700 kb on - strand, within GFF717at 710.700 kb on - strand, within GFF717at 710.700 kb on - strand, within GFF717at 710.701 kb on - strand, within GFF717at 710.703 kb on + strand, within GFF717at 710.711 kb on - strand, within GFF717at 710.719 kb on + strand, within GFF717at 710.721 kb on - strand, within GFF717at 710.764 kb on + strand, within GFF717at 710.790 kb on + strand, within GFF717at 710.798 kb on - strand, within GFF717at 710.798 kb on - strand, within GFF717at 710.798 kb on - strand, within GFF717at 710.803 kb on - strand, within GFF717at 710.835 kb on + strand, within GFF717at 710.836 kb on + strand, within GFF717at 710.841 kb on + strand, within GFF717at 710.849 kb on - strand, within GFF717at 710.849 kb on - strand, within GFF717at 710.849 kb on - strand, within GFF717at 710.849 kb on - strand, within GFF717at 710.849 kb on - strand, within GFF717at 710.851 kb on + strand, within GFF717at 710.851 kb on + strand, within GFF717at 710.856 kb on + strand, within GFF717at 710.864 kb on - strand, within GFF717at 710.867 kb on + strand, within GFF717at 710.881 kb on + strand, within GFF717at 710.894 kb on + strand, within GFF717at 710.897 kb on - strand, within GFF717at 710.902 kb on - strand, within GFF717at 710.902 kb on - strand, within GFF717at 710.955 kb on - strandat 710.964 kb on + strandat 710.982 kb on + strandat 710.982 kb on + strandat 710.990 kb on - strandat 710.990 kb on - strandat 710.990 kb on - strandat 710.990 kb on - strandat 710.992 kb on + strandat 710.992 kb on + strandat 711.000 kb on - strandat 711.021 kb on + strandat 711.049 kb on + strandat 711.059 kb on + strandat 711.059 kb on + strandat 711.064 kb on + strandat 711.064 kb on + strandat 711.064 kb on + strandat 711.064 kb on + strandat 711.072 kb on - strandat 711.079 kb on - strandat 711.092 kb on - strandat 711.111 kb on + strandat 711.116 kb on + strandat 711.119 kb on - strandat 711.119 kb on - strandat 711.183 kb on - strandat 711.185 kb on - strandat 711.188 kb on - strandat 711.202 kb on + strand, within GFF718at 711.202 kb on + strand, within GFF718at 711.207 kb on + strand, within GFF718at 711.207 kb on + strand, within GFF718at 711.207 kb on + strand, within GFF718at 711.210 kb on - strand, within GFF718at 711.215 kb on - strand, within GFF718at 711.215 kb on - strand, within GFF718at 711.224 kb on - strand, within GFF718at 711.227 kb on + strand, within GFF718at 711.250 kb on + strand, within GFF718at 711.254 kb on + strand, within GFF718at 711.254 kb on + strand, within GFF718at 711.254 kb on + strand, within GFF718at 711.262 kb on - strand, within GFF718at 711.262 kb on - strand, within GFF718at 711.269 kb on + strand, within GFF718at 711.277 kb on - strand, within GFF718at 711.335 kb on - strand, within GFF718at 711.356 kb on + strand, within GFF718at 711.359 kb on + strand, within GFF718at 711.361 kb on + strand, within GFF718at 711.361 kb on + strand, within GFF718at 711.364 kb on - strand, within GFF718at 711.364 kb on - strand, within GFF718at 711.366 kb on + strand, within GFF718at 711.368 kb on + strand, within GFF718at 711.368 kb on + strand, within GFF718at 711.371 kb on + strand, within GFF718at 711.381 kb on - strand, within GFF718at 711.390 kb on - strand, within GFF718at 711.394 kb on + strand, within GFF718at 711.400 kb on - strand, within GFF718at 711.402 kb on + strand, within GFF718at 711.402 kb on - strand, within GFF718at 711.402 kb on - strand, within GFF718at 711.442 kb on + strand, within GFF718at 711.469 kb on - strand, within GFF718at 711.471 kb on + strand, within GFF718at 711.480 kb on + strand, within GFF718at 711.480 kb on + strand, within GFF718at 711.480 kb on - strand, within GFF718at 711.481 kb on + strand, within GFF718at 711.488 kb on - strand, within GFF718at 711.511 kb on + strand, within GFF718at 711.511 kb on + strand, within GFF718at 711.537 kb on + strandat 711.540 kb on - strandat 711.545 kb on - strandat 711.545 kb on - strandat 711.545 kb on - strandat 711.595 kb on + strandat 711.601 kb on + strandat 711.607 kb on + strandat 711.722 kb on + strand, within GFF719at 711.740 kb on + strand, within GFF719at 711.758 kb on + strand, within GFF719at 711.892 kb on + strand, within GFF719at 712.005 kb on + strand, within GFF719at 712.010 kb on + strand, within GFF719at 712.028 kb on + strand, within GFF719at 712.028 kb on + strand, within GFF719at 712.053 kb on + strand, within GFF719at 712.193 kb on + strandat 712.282 kb on - strandat 712.310 kb on - strandat 712.401 kb on - strandat 712.401 kb on - strandat 712.423 kb on - strandat 712.429 kb on + strandat 712.429 kb on + strandat 712.453 kb on + strandat 712.476 kb on + strandat 712.509 kb on + strandat 712.562 kb on - strand, within GFF720at 712.580 kb on - strand, within GFF720at 712.581 kb on - strand, within GFF720at 712.588 kb on + strand, within GFF720at 712.588 kb on - strand, within GFF720at 712.590 kb on + strand, within GFF720at 712.590 kb on + strand, within GFF720at 712.598 kb on - strand, within GFF720at 712.616 kb on + strand, within GFF720at 712.660 kb on - strand, within GFF720at 712.669 kb on + strand, within GFF720at 712.669 kb on + strand, within GFF720at 712.669 kb on + strand, within GFF720at 712.669 kb on + strand, within GFF720at 712.669 kb on + strand, within GFF720at 712.669 kb on + strand, within GFF720at 712.677 kb on - strand, within GFF720at 712.677 kb on - strand, within GFF720at 712.677 kb on - strand, within GFF720at 712.677 kb on - strand, within GFF720at 712.677 kb on - strand, within GFF720at 712.677 kb on - strand, within GFF720at 712.684 kb on + strand, within GFF720at 712.685 kb on + strand, within GFF720at 712.691 kb on - strand, within GFF720at 712.698 kb on - strand, within GFF720at 712.740 kb on + strand, within GFF720at 712.750 kb on + strand, within GFF720at 712.759 kb on - strand, within GFF720at 712.759 kb on - strand, within GFF720at 712.759 kb on - strand, within GFF720at 712.759 kb on - strand, within GFF720at 712.759 kb on - strand, within GFF720at 712.782 kb on - strand, within GFF720at 712.826 kb on - strand, within GFF720at 712.833 kb on + strand, within GFF720at 712.833 kb on + strand, within GFF720at 712.836 kb on - strand, within GFF720at 712.841 kb on - strand, within GFF720at 712.841 kb on - strand, within GFF720at 712.841 kb on - strand, within GFF720at 712.841 kb on - strand, within GFF720at 712.857 kb on + strand, within GFF720at 712.859 kb on + strand, within GFF720at 712.859 kb on + strand, within GFF720at 712.864 kb on + strand, within GFF720at 712.867 kb on - strand, within GFF720at 712.867 kb on - strand, within GFF720at 712.867 kb on - strand, within GFF720at 712.872 kb on - strand, within GFF720at 712.897 kb on - strand, within GFF720at 712.903 kb on - strand, within GFF720at 712.905 kb on + strand, within GFF720at 712.905 kb on + strand, within GFF720at 712.905 kb on + strand, within GFF720at 712.913 kb on - strand, within GFF720at 712.913 kb on - strand, within GFF720at 712.937 kb on + strand, within GFF720at 712.945 kb on - strand, within GFF720at 712.949 kb on + strand, within GFF720at 712.949 kb on + strand, within GFF720at 713.042 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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710,634 + GFF717 0.65 -1.4
710,642 - GFF717 0.66 -1.1
710,679 + GFF717 0.69 -1.4
710,687 + GFF717 0.70 -1.1
710,693 + GFF717 0.70 +1.1
710,693 + GFF717 0.70 -1.2
710,693 + GFF717 0.70 -1.0
710,693 + GFF717 0.70 +0.1
710,693 + GFF717 0.70 +0.6
710,698 + GFF717 0.70 -0.0
710,698 + GFF717 0.70 -1.9
710,700 - GFF717 0.71 -0.1
710,700 - GFF717 0.71 -1.8
710,700 - GFF717 0.71 +1.1
710,701 - GFF717 0.71 -2.6
710,703 + GFF717 0.71 +1.0
710,711 - GFF717 0.71 -0.7
710,719 + GFF717 0.72 -0.5
710,721 - GFF717 0.72 -1.1
710,764 + GFF717 0.76 +1.0
710,790 + GFF717 0.78 +0.5
710,798 - GFF717 0.78 -1.3
710,798 - GFF717 0.78 -0.1
710,798 - GFF717 0.78 -0.2
710,803 - GFF717 0.79 -0.1
710,835 + GFF717 0.81 -1.8
710,836 + GFF717 0.81 -0.7
710,841 + GFF717 0.82 -1.0
710,849 - GFF717 0.82 +0.2
710,849 - GFF717 0.82 -0.7
710,849 - GFF717 0.82 -2.0
710,849 - GFF717 0.82 -2.8
710,849 - GFF717 0.82 +0.5
710,851 + GFF717 0.83 -0.5
710,851 + GFF717 0.83 -0.3
710,856 + GFF717 0.83 +0.8
710,864 - GFF717 0.84 -2.5
710,867 + GFF717 0.84 +1.1
710,881 + GFF717 0.85 -0.1
710,894 + GFF717 0.86 -0.1
710,897 - GFF717 0.86 +0.9
710,902 - GFF717 0.87 +0.8
710,902 - GFF717 0.87 +0.7
710,955 - -0.3
710,964 + -0.0
710,982 + +0.3
710,982 + -0.7
710,990 - +0.4
710,990 - -0.4
710,990 - -2.4
710,990 - -1.8
710,992 + -0.4
710,992 + -1.4
711,000 - +0.3
711,021 + +0.4
711,049 + +0.1
711,059 + +0.8
711,059 + +0.2
711,064 + -3.0
711,064 + +1.4
711,064 + -0.9
711,064 + -0.5
711,072 - -0.0
711,079 - -2.1
711,092 - -2.1
711,111 + -0.4
711,116 + +0.2
711,119 - -2.2
711,119 - +0.8
711,183 - -1.2
711,185 - +0.7
711,188 - +0.7
711,202 + GFF718 0.11 -0.4
711,202 + GFF718 0.11 -1.8
711,207 + GFF718 0.13 +0.0
711,207 + GFF718 0.13 +0.8
711,207 + GFF718 0.13 +0.5
711,210 - GFF718 0.13 +1.0
711,215 - GFF718 0.14 +1.2
711,215 - GFF718 0.14 +0.8
711,224 - GFF718 0.17 -0.2
711,227 + GFF718 0.17 -2.6
711,250 + GFF718 0.23 +0.7
711,254 + GFF718 0.24 +0.1
711,254 + GFF718 0.24 +0.6
711,254 + GFF718 0.24 -0.1
711,262 - GFF718 0.26 +0.5
711,262 - GFF718 0.26 -0.2
711,269 + GFF718 0.27 -1.2
711,277 - GFF718 0.29 +1.7
711,335 - GFF718 0.43 -0.4
711,356 + GFF718 0.48 -0.4
711,359 + GFF718 0.48 +0.3
711,361 + GFF718 0.49 +0.2
711,361 + GFF718 0.49 -0.9
711,364 - GFF718 0.50 -0.5
711,364 - GFF718 0.50 +0.2
711,366 + GFF718 0.50 -1.0
711,368 + GFF718 0.51 +1.0
711,368 + GFF718 0.51 +0.3
711,371 + GFF718 0.51 +1.7
711,381 - GFF718 0.54 +0.4
711,390 - GFF718 0.56 +1.6
711,394 + GFF718 0.57 +0.6
711,400 - GFF718 0.58 -0.1
711,402 + GFF718 0.59 +0.7
711,402 - GFF718 0.59 -0.6
711,402 - GFF718 0.59 -0.4
711,442 + GFF718 0.68 -0.6
711,469 - GFF718 0.74 +1.3
711,471 + GFF718 0.75 +0.4
711,480 + GFF718 0.77 -0.3
711,480 + GFF718 0.77 +0.0
711,480 - GFF718 0.77 -0.3
711,481 + GFF718 0.77 -1.4
711,488 - GFF718 0.79 -0.3
711,511 + GFF718 0.84 -0.2
711,511 + GFF718 0.84 +0.8
711,537 + -1.9
711,540 - -1.2
711,545 - +0.4
711,545 - +0.1
711,545 - -2.4
711,595 + -0.0
711,601 + +0.7
711,607 + -0.4
711,722 + GFF719 0.18 -1.2
711,740 + GFF719 0.22 -1.2
711,758 + GFF719 0.25 -2.0
711,892 + GFF719 0.52 +0.4
712,005 + GFF719 0.74 -1.3
712,010 + GFF719 0.75 -0.7
712,028 + GFF719 0.78 -0.1
712,028 + GFF719 0.78 -1.3
712,053 + GFF719 0.83 +0.8
712,193 + +1.7
712,282 - -0.6
712,310 - +1.8
712,401 - -1.5
712,401 - +0.1
712,423 - -1.5
712,429 + -0.0
712,429 + +0.5
712,453 + -1.0
712,476 + +0.7
712,509 + -0.1
712,562 - GFF720 0.17 -0.4
712,580 - GFF720 0.20 -0.2
712,581 - GFF720 0.21 -0.6
712,588 + GFF720 0.22 -1.9
712,588 - GFF720 0.22 -0.4
712,590 + GFF720 0.22 -0.0
712,590 + GFF720 0.22 -1.3
712,598 - GFF720 0.24 -2.0
712,616 + GFF720 0.27 +0.1
712,660 - GFF720 0.35 -0.6
712,669 + GFF720 0.36 +0.6
712,669 + GFF720 0.36 +1.3
712,669 + GFF720 0.36 -0.7
712,669 + GFF720 0.36 +1.5
712,669 + GFF720 0.36 -0.3
712,669 + GFF720 0.36 +0.8
712,677 - GFF720 0.38 -0.7
712,677 - GFF720 0.38 +0.3
712,677 - GFF720 0.38 -0.5
712,677 - GFF720 0.38 +0.3
712,677 - GFF720 0.38 +0.3
712,677 - GFF720 0.38 -0.7
712,684 + GFF720 0.39 +0.7
712,685 + GFF720 0.39 -1.4
712,691 - GFF720 0.40 +0.3
712,698 - GFF720 0.42 +0.4
712,740 + GFF720 0.49 -0.7
712,750 + GFF720 0.51 -1.6
712,759 - GFF720 0.52 -1.0
712,759 - GFF720 0.52 -1.4
712,759 - GFF720 0.52 -0.1
712,759 - GFF720 0.52 +0.4
712,759 - GFF720 0.52 +0.9
712,782 - GFF720 0.57 -2.2
712,826 - GFF720 0.64 +0.7
712,833 + GFF720 0.66 -1.3
712,833 + GFF720 0.66 -0.5
712,836 - GFF720 0.66 +0.1
712,841 - GFF720 0.67 +0.9
712,841 - GFF720 0.67 +1.3
712,841 - GFF720 0.67 -0.0
712,841 - GFF720 0.67 +0.1
712,857 + GFF720 0.70 -3.4
712,859 + GFF720 0.70 +0.3
712,859 + GFF720 0.70 -0.8
712,864 + GFF720 0.71 -0.3
712,867 - GFF720 0.72 +0.1
712,867 - GFF720 0.72 -1.2
712,867 - GFF720 0.72 -0.5
712,872 - GFF720 0.73 -0.5
712,897 - GFF720 0.77 +0.4
712,903 - GFF720 0.78 -0.4
712,905 + GFF720 0.78 -0.3
712,905 + GFF720 0.78 +0.5
712,905 + GFF720 0.78 -1.1
712,913 - GFF720 0.80 +0.2
712,913 - GFF720 0.80 -1.3
712,937 + GFF720 0.84 -2.2
712,945 - GFF720 0.86 +0.3
712,949 + GFF720 0.86 -0.4
712,949 + GFF720 0.86 +0.4
713,042 - -0.9

Or see this region's nucleotide sequence