Strain Fitness in Sphingobium sp. HT1-2 around GFF70

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
58,652	+				+0.4
58,652	+				-0.5
58,652	+				-0.3
58,652	+				+0.1
58,652	+				+0.1
58,652	+				-0.4
58,652	+				-1.2
58,652	+				-0.1
58,652	+				-1.2
58,652	+				-0.2
58,652	+				+0.2
58,652	+				-2.0
58,652	+				+0.6
58,652	+				+1.0
58,653	-				+1.4
58,657	+				-2.5
58,660	-				+0.6
58,660	-				-1.3
58,660	-				-0.5
58,660	-				-1.1
58,660	-				+0.6
58,660	-				-0.5
58,660	-				+1.6
58,660	-				-0.1
58,660	-				+0.2
58,660	-				+0.4
58,660	-				+0.6
58,660	-				-0.7
58,660	-				-0.6
58,660	-				-0.8
58,660	-				+0.8
58,660	-				-0.4
58,660	-				+0.0
58,660	-				-0.8
58,660	-				+0.1
58,660	-				-0.1
58,662	+				-1.1
58,665	-				+0.5
58,665	-				+0.1
58,670	-				+0.8
58,670	-				+0.2
58,670	-				+1.8
58,670	-				-0.4
58,684	-				-1.5
58,696	-				+0.1
58,735	-		GFF69	0.14	-1.1
58,738	+		GFF69	0.14	+0.3
58,754	-		GFF69	0.16	-1.4
58,758	-		GFF69	0.16	-0.9
58,758	-		GFF69	0.16	+2.2
58,769	+		GFF69	0.18	+0.2
58,777	+		GFF69	0.18	+0.4
58,785	-		GFF69	0.19	-1.1
58,801	+		GFF69	0.21	-0.9
58,826	+		GFF69	0.24	+1.2
58,826	+		GFF69	0.24	-0.8
58,838	+		GFF69	0.25	-2.4
58,847	+		GFF69	0.26	-0.4
58,852	+		GFF69	0.27	+0.7
58,857	+		GFF69	0.27	+0.7
58,857	+		GFF69	0.27	-1.3
58,862	+		GFF69	0.28	-1.2
58,862	+		GFF69	0.28	+0.9
58,870	-		GFF69	0.29	-0.1
58,891	-		GFF69	0.31	-0.7
58,891	-		GFF69	0.31	-1.2
58,927	-		GFF69	0.35	+1.8
58,929	+		GFF69	0.35	+1.0
58,933	+		GFF69	0.36	-2.0
58,937	-		GFF69	0.36	-1.3
58,940	-		GFF69	0.36	+0.5
58,973	-		GFF69	0.40	-0.5
59,010	-		GFF69	0.44	-0.1
59,037	+		GFF69	0.47	+1.1
59,045	-		GFF69	0.48	-0.2
59,064	-		GFF69	0.50	-0.1
59,157	+		GFF69	0.60	-0.5
59,173	-		GFF69	0.62	-0.8
59,173	-		GFF69	0.62	+0.3
59,173	-		GFF69	0.62	-1.7
59,173	-		GFF69	0.62	+0.0
59,197	-		GFF69	0.65	-0.1
59,204	-		GFF69	0.65	+0.4
59,227	-		GFF69	0.68	-0.7
59,231	+		GFF69	0.68	+0.4
59,231	+		GFF69	0.68	-0.3
59,231	+		GFF69	0.68	-2.4
59,231	+		GFF69	0.68	-0.5
59,237	-		GFF69	0.69	-0.7
59,239	-		GFF69	0.69	+0.4
59,239	-		GFF69	0.69	-0.3
59,239	-		GFF69	0.69	-3.0
59,239	-		GFF69	0.69	-1.5
59,239	-		GFF69	0.69	-0.3
59,239	-		GFF69	0.69	+1.5
59,249	+		GFF69	0.70	-0.5
59,254	+		GFF69	0.71	-0.5
59,254	+		GFF69	0.71	-0.6
59,254	+		GFF69	0.71	-0.0
59,257	-		GFF69	0.71	-0.2
59,262	-		GFF69	0.72	-1.5
59,262	-		GFF69	0.72	-1.2
59,262	-		GFF69	0.72	+0.1
59,262	-		GFF69	0.72	+0.4
59,286	+		GFF69	0.74	+0.4
59,286	+		GFF69	0.74	-1.7
59,289	-		GFF69	0.75	-1.1
59,296	-		GFF69	0.76	+0.8
59,308	-		GFF69	0.77	+0.7
59,318	-		GFF69	0.78	-0.2
59,349	+		GFF69	0.81	-1.8
59,357	-		GFF69	0.82	-1.3
59,366	+		GFF69	0.83	-0.2
59,366	+		GFF69	0.83	-0.2
59,366	+		GFF69	0.83	-3.0
59,374	-		GFF69	0.84	-1.0
59,374	-		GFF69	0.84	-0.4
59,374	-		GFF69	0.84	-0.9
59,377	+		GFF69	0.84	-1.2
59,377	+		GFF69	0.84	+0.8
59,377	+		GFF69	0.84	-2.2
59,377	+		GFF69	0.84	+0.8
59,384	-		GFF69	0.85	-1.0
59,385	-		GFF69	0.85	-0.7
59,394	-		GFF69	0.86	+0.4
59,400	-		GFF69	0.87	+0.1
59,425	-		GFF69	0.90	-1.4
59,427	-				+0.2
59,475	+				+0.1
59,478	-				-0.2
59,499	+				+1.0
59,500	-				-0.4
59,517	+				-1.0
59,517	+				-1.5
59,518	+				+0.4
59,518	+				-0.4
59,526	-				-0.5
59,526	-				+0.5
59,526	-				-1.5
59,526	-				-1.2
59,550	+				-2.0
59,554	-				-0.3
59,556	-				+1.1
59,640	+				-1.4
59,648	-				+0.6
59,648	-				+0.7
59,693	+		GFF70	0.23	+1.3
59,700	+		GFF70	0.27	-0.9
59,711	+		GFF70	0.32	+1.1
59,719	-		GFF70	0.35	+0.5
59,728	+		GFF70	0.39	-0.6
59,736	-		GFF70	0.43	-0.2
59,754	+		GFF70	0.51	+1.8
59,759	+		GFF70	0.53	+0.8
59,767	-		GFF70	0.57	-0.8
59,786	-		GFF70	0.65	+0.6
59,824	-		GFF70	0.82	-0.5
59,824	-		GFF70	0.82	+0.1
59,824	-		GFF70	0.82	-1.2
59,846	+				-0.1
59,859	+				-1.6
59,867	-				-2.0
59,877	-				-1.0
59,897	+				-0.5
59,905	-				-0.2
59,905	-				-0.5
59,933	+				-0.2
59,941	-				+0.9
59,981	-				+0.2
59,982	+				-1.0
59,990	-				-0.4
60,004	+				-1.5
60,020	-		GFF71	0.10	+1.1
60,031	+		GFF71	0.11	-0.1
60,042	+		GFF71	0.12	-1.2
60,068	+		GFF71	0.14	+0.1
60,101	+		GFF71	0.17	-1.2
60,101	+		GFF71	0.17	-0.8
60,104	-		GFF71	0.17	+0.8
60,120	+		GFF71	0.18	-0.4
60,176	-		GFF71	0.23	-1.0
60,194	+		GFF71	0.24	-0.6
60,194	+		GFF71	0.24	-0.3
60,194	+		GFF71	0.24	-1.4
60,194	+		GFF71	0.24	+0.2
60,194	+		GFF71	0.24	-1.0
60,194	+		GFF71	0.24	-0.4
60,199	+		GFF71	0.24	-0.2
60,199	+		GFF71	0.24	+0.6
60,199	+		GFF71	0.24	-0.2
60,202	-		GFF71	0.25	-0.2
60,202	-		GFF71	0.25	+0.9
60,202	-		GFF71	0.25	+0.5
60,202	-		GFF71	0.25	-0.9
60,202	-		GFF71	0.25	-0.6
60,202	-		GFF71	0.25	-0.8
60,202	-		GFF71	0.25	-0.2
60,208	+		GFF71	0.25	-1.5
60,208	-		GFF71	0.25	-1.1
60,209	+		GFF71	0.25	-1.0
60,212	-		GFF71	0.25	+0.1
60,223	+		GFF71	0.26	-1.6
60,238	+		GFF71	0.27	+0.5
60,238	+		GFF71	0.27	-0.4
60,242	+		GFF71	0.28	+1.1
60,243	+		GFF71	0.28	-0.6
60,246	-		GFF71	0.28	-1.5
60,248	+		GFF71	0.28	+1.3
60,251	-		GFF71	0.28	-1.5
60,317	+		GFF71	0.34	+0.4
60,317	+		GFF71	0.34	-1.4
60,355	+		GFF71	0.37	+1.6
60,363	-		GFF71	0.37	-0.0
60,365	-		GFF71	0.38	-0.3
60,365	-		GFF71	0.38	-2.2
60,387	+		GFF71	0.39	-2.1
60,390	-		GFF71	0.40	+0.6
60,392	+		GFF71	0.40	+1.6
60,400	+		GFF71	0.40	+1.6
60,408	-		GFF71	0.41	+0.8
60,408	-		GFF71	0.41	+0.9
60,410	+		GFF71	0.41	-1.5
60,417	+		GFF71	0.42	-0.2
60,417	+		GFF71	0.42	-0.2
60,425	-		GFF71	0.42	-1.2
60,442	-		GFF71	0.44	-1.2
60,459	+		GFF71	0.45	-0.1
60,469	-		GFF71	0.46	+0.5
60,513	+		GFF71	0.49	+0.3
60,518	+		GFF71	0.50	+0.7
60,521	-		GFF71	0.50	+0.1
60,537	+		GFF71	0.51	+0.1
60,544	+		GFF71	0.52	-1.8
60,566	+		GFF71	0.53	+0.1
60,583	-		GFF71	0.55	+0.3
60,623	+		GFF71	0.58	-1.8
60,641	+		GFF71	0.59	-0.5
60,649	-		GFF71	0.60	-0.7
60,650	-		GFF71	0.60	+0.0
60,706	-		GFF71	0.65	-1.4
60,706	-		GFF71	0.65	+0.6
60,745	+		GFF71	0.68	+1.1
60,750	+		GFF71	0.68	-0.1
60,755	+		GFF71	0.68	+0.3
60,755	+		GFF71	0.68	+0.9
60,763	-		GFF71	0.69	-0.3
60,795	+		GFF71	0.72	+0.4
60,795	+		GFF71	0.72	+0.4
60,803	-		GFF71	0.72	-0.0
60,812	-		GFF71	0.73	-0.7
60,847	+		GFF71	0.76	-0.6