Strain Fitness in Sphingobium sp. HT1-2 around GFF661

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF659 and GFF660 are separated by 2 nucleotidesGFF660 and GFF661 are separated by 6 nucleotidesGFF661 and GFF662 are separated by 82 nucleotidesGFF662 and GFF663 are separated by 125 nucleotides GFF659 - Phosphohistidine phosphatase SixA, at 658,973 to 659,515 GFF659 GFF660 - Acetyltransferase, GNAT family, at 659,518 to 660,042 GFF660 GFF661 - Transcriptional regulator PA2737, MerR family, at 660,049 to 660,393 GFF661 GFF662 - Integration host factor alpha subunit, at 660,476 to 660,772 GFF662 GFF663 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180), at 660,898 to 661,863 GFF663 Position (kb) 660 661Strain fitness (log2 ratio) -3 -2 -1 0 1at 659.075 kb on + strand, within GFF659at 659.077 kb on + strand, within GFF659at 659.105 kb on + strand, within GFF659at 659.113 kb on - strand, within GFF659at 659.133 kb on + strand, within GFF659at 659.150 kb on + strand, within GFF659at 659.158 kb on + strand, within GFF659at 659.201 kb on + strand, within GFF659at 659.205 kb on + strand, within GFF659at 659.227 kb on - strand, within GFF659at 659.231 kb on + strand, within GFF659at 659.231 kb on + strand, within GFF659at 659.231 kb on + strand, within GFF659at 659.245 kb on - strand, within GFF659at 659.302 kb on - strand, within GFF659at 659.334 kb on + strand, within GFF659at 659.340 kb on - strand, within GFF659at 659.340 kb on - strand, within GFF659at 659.347 kb on + strand, within GFF659at 659.374 kb on - strand, within GFF659at 659.374 kb on - strand, within GFF659at 659.374 kb on - strand, within GFF659at 659.394 kb on + strand, within GFF659at 659.415 kb on + strand, within GFF659at 659.428 kb on - strand, within GFF659at 659.440 kb on + strand, within GFF659at 659.446 kb on + strand, within GFF659at 659.446 kb on + strand, within GFF659at 659.456 kb on + strand, within GFF659at 659.456 kb on + strand, within GFF659at 659.456 kb on + strand, within GFF659at 659.464 kb on - strandat 659.471 kb on - strandat 659.474 kb on - strandat 659.507 kb on - strandat 659.514 kb on + strandat 659.514 kb on + strandat 659.514 kb on + strandat 659.514 kb on + strandat 659.517 kb on - strandat 659.522 kb on - strandat 659.522 kb on - strandat 659.522 kb on - strandat 659.535 kb on - strandat 659.553 kb on - strandat 659.556 kb on - strandat 659.583 kb on - strand, within GFF660at 659.603 kb on + strand, within GFF660at 659.603 kb on + strand, within GFF660at 659.603 kb on + strand, within GFF660at 659.608 kb on + strand, within GFF660at 659.608 kb on + strand, within GFF660at 659.608 kb on + strand, within GFF660at 659.608 kb on + strand, within GFF660at 659.611 kb on - strand, within GFF660at 659.611 kb on - strand, within GFF660at 659.616 kb on - strand, within GFF660at 659.616 kb on - strand, within GFF660at 659.616 kb on - strand, within GFF660at 659.626 kb on - strand, within GFF660at 659.646 kb on - strand, within GFF660at 659.665 kb on + strand, within GFF660at 659.665 kb on + strand, within GFF660at 659.667 kb on + strand, within GFF660at 659.667 kb on + strand, within GFF660at 659.673 kb on - strand, within GFF660at 659.673 kb on - strand, within GFF660at 659.675 kb on + strand, within GFF660at 659.695 kb on + strand, within GFF660at 659.704 kb on + strand, within GFF660at 659.708 kb on - strand, within GFF660at 659.712 kb on - strand, within GFF660at 659.712 kb on - strand, within GFF660at 659.712 kb on - strand, within GFF660at 659.722 kb on + strand, within GFF660at 659.730 kb on - strand, within GFF660at 659.734 kb on + strand, within GFF660at 659.734 kb on + strand, within GFF660at 659.740 kb on - strand, within GFF660at 659.741 kb on + strand, within GFF660at 659.741 kb on + strand, within GFF660at 659.742 kb on - strand, within GFF660at 659.749 kb on - strand, within GFF660at 659.749 kb on - strand, within GFF660at 659.754 kb on - strand, within GFF660at 659.789 kb on + strand, within GFF660at 659.836 kb on - strand, within GFF660at 659.859 kb on + strand, within GFF660at 659.863 kb on + strand, within GFF660at 659.864 kb on + strand, within GFF660at 659.872 kb on - strand, within GFF660at 659.872 kb on - strand, within GFF660at 659.874 kb on + strand, within GFF660at 659.915 kb on - strand, within GFF660at 659.940 kb on - strand, within GFF660at 659.956 kb on + strand, within GFF660at 659.957 kb on + strand, within GFF660at 659.968 kb on + strand, within GFF660at 659.987 kb on + strand, within GFF660at 660.012 kb on - strandat 660.017 kb on + strandat 660.037 kb on + strandat 660.054 kb on + strandat 660.055 kb on + strandat 660.081 kb on + strandat 660.094 kb on - strand, within GFF661at 660.106 kb on - strand, within GFF661at 660.120 kb on + strand, within GFF661at 660.164 kb on + strand, within GFF661at 660.204 kb on - strand, within GFF661at 660.206 kb on - strand, within GFF661at 660.211 kb on - strand, within GFF661at 660.211 kb on - strand, within GFF661at 660.211 kb on - strand, within GFF661at 660.248 kb on + strand, within GFF661at 660.249 kb on + strand, within GFF661at 660.257 kb on - strand, within GFF661at 660.257 kb on - strand, within GFF661at 660.337 kb on + strand, within GFF661at 660.342 kb on + strand, within GFF661at 660.364 kb on + strandat 660.372 kb on - strandat 660.401 kb on + strandat 660.401 kb on + strandat 660.401 kb on + strandat 660.479 kb on + strandat 660.479 kb on + strandat 660.484 kb on + strandat 660.492 kb on - strandat 660.762 kb on + strandat 660.787 kb on - strandat 660.792 kb on + strandat 660.795 kb on - strandat 660.803 kb on - strandat 660.803 kb on - strandat 660.818 kb on - strandat 660.818 kb on - strandat 660.818 kb on - strandat 660.841 kb on + strandat 660.862 kb on + strandat 660.862 kb on + strandat 660.862 kb on + strandat 660.870 kb on - strandat 660.870 kb on - strandat 660.870 kb on - strandat 660.870 kb on - strandat 660.875 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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659,075 + GFF659 0.19 -2.1
659,077 + GFF659 0.19 -0.3
659,105 + GFF659 0.24 -0.2
659,113 - GFF659 0.26 +0.1
659,133 + GFF659 0.29 -1.0
659,150 + GFF659 0.33 -0.8
659,158 + GFF659 0.34 -2.6
659,201 + GFF659 0.42 -1.6
659,205 + GFF659 0.43 -0.1
659,227 - GFF659 0.47 +0.7
659,231 + GFF659 0.48 +0.2
659,231 + GFF659 0.48 -1.3
659,231 + GFF659 0.48 -2.3
659,245 - GFF659 0.50 -0.1
659,302 - GFF659 0.61 -1.5
659,334 + GFF659 0.66 +0.0
659,340 - GFF659 0.68 +0.2
659,340 - GFF659 0.68 -0.4
659,347 + GFF659 0.69 -1.3
659,374 - GFF659 0.74 +0.4
659,374 - GFF659 0.74 -2.1
659,374 - GFF659 0.74 -1.6
659,394 + GFF659 0.78 -1.6
659,415 + GFF659 0.81 -0.6
659,428 - GFF659 0.84 -0.6
659,440 + GFF659 0.86 -1.9
659,446 + GFF659 0.87 -1.7
659,446 + GFF659 0.87 -1.6
659,456 + GFF659 0.89 -2.1
659,456 + GFF659 0.89 +0.2
659,456 + GFF659 0.89 -1.5
659,464 - -2.8
659,471 - -1.0
659,474 - -1.0
659,507 - -1.5
659,514 + +0.5
659,514 + -0.1
659,514 + +0.1
659,514 + +0.8
659,517 - -1.9
659,522 - -1.0
659,522 - -1.5
659,522 - -0.5
659,535 - +0.2
659,553 - +0.0
659,556 - -0.7
659,583 - GFF660 0.12 -0.4
659,603 + GFF660 0.16 -0.8
659,603 + GFF660 0.16 +0.2
659,603 + GFF660 0.16 -2.3
659,608 + GFF660 0.17 -0.6
659,608 + GFF660 0.17 +0.4
659,608 + GFF660 0.17 -0.5
659,608 + GFF660 0.17 -1.6
659,611 - GFF660 0.18 -2.4
659,611 - GFF660 0.18 -3.3
659,616 - GFF660 0.19 -0.3
659,616 - GFF660 0.19 +1.4
659,616 - GFF660 0.19 +0.9
659,626 - GFF660 0.21 -1.5
659,646 - GFF660 0.24 -0.7
659,665 + GFF660 0.28 -0.6
659,665 + GFF660 0.28 +0.2
659,667 + GFF660 0.28 -0.2
659,667 + GFF660 0.28 +0.4
659,673 - GFF660 0.30 -0.4
659,673 - GFF660 0.30 -0.2
659,675 + GFF660 0.30 -0.6
659,695 + GFF660 0.34 -0.7
659,704 + GFF660 0.35 +0.3
659,708 - GFF660 0.36 -0.1
659,712 - GFF660 0.37 -1.1
659,712 - GFF660 0.37 -0.3
659,712 - GFF660 0.37 +1.1
659,722 + GFF660 0.39 -1.8
659,730 - GFF660 0.40 +1.0
659,734 + GFF660 0.41 -0.7
659,734 + GFF660 0.41 +1.4
659,740 - GFF660 0.42 -0.2
659,741 + GFF660 0.42 -1.1
659,741 + GFF660 0.42 +0.4
659,742 - GFF660 0.43 +0.9
659,749 - GFF660 0.44 -1.1
659,749 - GFF660 0.44 +0.7
659,754 - GFF660 0.45 +0.9
659,789 + GFF660 0.52 +0.1
659,836 - GFF660 0.61 +0.2
659,859 + GFF660 0.65 -1.1
659,863 + GFF660 0.66 -0.3
659,864 + GFF660 0.66 -2.3
659,872 - GFF660 0.67 +0.3
659,872 - GFF660 0.67 -1.0
659,874 + GFF660 0.68 -2.2
659,915 - GFF660 0.76 +0.8
659,940 - GFF660 0.80 +0.6
659,956 + GFF660 0.83 -0.6
659,957 + GFF660 0.84 -1.0
659,968 + GFF660 0.86 -0.7
659,987 + GFF660 0.89 -0.5
660,012 - -1.5
660,017 + -0.4
660,037 + -0.4
660,054 + -1.1
660,055 + +0.2
660,081 + -1.6
660,094 - GFF661 0.13 -0.4
660,106 - GFF661 0.17 +1.5
660,120 + GFF661 0.21 +1.0
660,164 + GFF661 0.33 +1.4
660,204 - GFF661 0.45 +0.1
660,206 - GFF661 0.46 -0.8
660,211 - GFF661 0.47 -0.9
660,211 - GFF661 0.47 +0.6
660,211 - GFF661 0.47 -1.2
660,248 + GFF661 0.58 -1.9
660,249 + GFF661 0.58 -0.1
660,257 - GFF661 0.60 -1.0
660,257 - GFF661 0.60 -0.9
660,337 + GFF661 0.83 +0.7
660,342 + GFF661 0.85 -2.0
660,364 + -0.3
660,372 - -0.3
660,401 + -1.2
660,401 + -0.6
660,401 + -0.6
660,479 + +0.6
660,479 + -2.9
660,484 + -0.5
660,492 - -0.6
660,762 + +0.3
660,787 - +0.4
660,792 + +0.7
660,795 - -1.8
660,803 - +1.0
660,803 - +0.0
660,818 - -1.0
660,818 - -0.5
660,818 - -0.4
660,841 + +0.4
660,862 + -0.8
660,862 + +0.3
660,862 + -1.0
660,870 - +1.2
660,870 - -0.2
660,870 - -1.3
660,870 - +0.0
660,875 - -0.4

Or see this region's nucleotide sequence