Strain Fitness in Sphingobium sp. HT1-2 around GFF604

Experiment: EMM_noCarbon with Sucrose and Putrescine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF602 and GFF603 are separated by 41 nucleotidesGFF603 and GFF604 are separated by 4 nucleotidesGFF604 and GFF605 are separated by 6 nucleotidesGFF605 and GFF606 are separated by 119 nucleotides GFF602 - Inner membrane protein translocase and chaperone YidC, long form, at 603,954 to 605,660 GFF602 GFF603 - GTP-binding protein EngB, at 605,702 to 606,349 GFF603 GFF604 - Protein PhnA, at 606,354 to 606,656 GFF604 GFF605 - Putative ligase protein, at 606,663 to 607,214 GFF605 GFF606 - hypothetical protein, at 607,334 to 607,768 GFF606 Position (kb) 606 607Strain fitness (log2 ratio) -3 -2 -1 0 1at 605.621 kb on + strandat 605.626 kb on + strandat 605.629 kb on - strandat 605.633 kb on + strandat 606.333 kb on - strandat 606.333 kb on - strandat 606.333 kb on - strandat 606.333 kb on - strandat 606.339 kb on + strandat 606.340 kb on - strandat 606.340 kb on - strandat 606.343 kb on + strandat 606.343 kb on + strandat 606.343 kb on + strandat 606.344 kb on + strandat 606.351 kb on - strandat 606.351 kb on - strandat 606.351 kb on - strandat 606.358 kb on - strandat 606.366 kb on + strandat 606.366 kb on + strandat 606.366 kb on + strandat 606.378 kb on - strandat 606.398 kb on + strand, within GFF604at 606.406 kb on - strand, within GFF604at 606.438 kb on - strand, within GFF604at 606.441 kb on + strand, within GFF604at 606.442 kb on + strand, within GFF604at 606.442 kb on + strand, within GFF604at 606.450 kb on - strand, within GFF604at 606.484 kb on - strand, within GFF604at 606.497 kb on - strand, within GFF604at 606.499 kb on - strand, within GFF604at 606.500 kb on + strand, within GFF604at 606.500 kb on + strand, within GFF604at 606.515 kb on + strand, within GFF604at 606.537 kb on - strand, within GFF604at 606.545 kb on + strand, within GFF604at 606.552 kb on + strand, within GFF604at 606.562 kb on - strand, within GFF604at 606.562 kb on - strand, within GFF604at 606.562 kb on - strand, within GFF604at 606.562 kb on - strand, within GFF604at 606.596 kb on - strand, within GFF604at 606.618 kb on + strand, within GFF604at 606.619 kb on + strand, within GFF604at 606.627 kb on - strandat 606.644 kb on - strandat 606.652 kb on + strandat 606.658 kb on - strandat 606.661 kb on + strandat 606.666 kb on + strandat 606.669 kb on - strandat 606.674 kb on - strandat 606.675 kb on + strandat 606.679 kb on - strandat 606.683 kb on - strandat 606.685 kb on + strandat 606.687 kb on + strandat 606.688 kb on - strandat 606.693 kb on - strandat 606.703 kb on + strandat 606.711 kb on - strandat 606.716 kb on + strandat 606.724 kb on - strand, within GFF605at 606.731 kb on - strand, within GFF605at 606.737 kb on - strand, within GFF605at 606.737 kb on - strand, within GFF605at 606.739 kb on + strand, within GFF605at 606.747 kb on - strand, within GFF605at 606.811 kb on + strand, within GFF605at 606.816 kb on + strand, within GFF605at 606.841 kb on - strand, within GFF605at 606.841 kb on - strand, within GFF605at 606.848 kb on - strand, within GFF605at 606.856 kb on + strand, within GFF605at 606.857 kb on + strand, within GFF605at 606.858 kb on + strand, within GFF605at 606.863 kb on + strand, within GFF605at 606.863 kb on + strand, within GFF605at 606.863 kb on + strand, within GFF605at 606.871 kb on - strand, within GFF605at 606.871 kb on - strand, within GFF605at 606.882 kb on - strand, within GFF605at 606.884 kb on + strand, within GFF605at 606.889 kb on + strand, within GFF605at 606.897 kb on - strand, within GFF605at 606.938 kb on + strand, within GFF605at 606.980 kb on + strand, within GFF605at 606.980 kb on + strand, within GFF605at 606.980 kb on + strand, within GFF605at 606.988 kb on + strand, within GFF605at 607.004 kb on + strand, within GFF605at 607.024 kb on + strand, within GFF605at 607.024 kb on + strand, within GFF605at 607.024 kb on + strand, within GFF605at 607.024 kb on + strand, within GFF605at 607.024 kb on + strand, within GFF605at 607.024 kb on + strand, within GFF605at 607.024 kb on + strand, within GFF605at 607.024 kb on + strand, within GFF605at 607.024 kb on + strand, within GFF605at 607.024 kb on + strand, within GFF605at 607.024 kb on + strand, within GFF605at 607.025 kb on - strand, within GFF605at 607.025 kb on - strand, within GFF605at 607.029 kb on + strand, within GFF605at 607.032 kb on - strand, within GFF605at 607.032 kb on - strand, within GFF605at 607.032 kb on - strand, within GFF605at 607.032 kb on - strand, within GFF605at 607.032 kb on - strand, within GFF605at 607.032 kb on - strand, within GFF605at 607.032 kb on - strand, within GFF605at 607.032 kb on - strand, within GFF605at 607.032 kb on - strand, within GFF605at 607.032 kb on - strand, within GFF605at 607.032 kb on - strand, within GFF605at 607.037 kb on + strand, within GFF605at 607.037 kb on + strand, within GFF605at 607.037 kb on + strand, within GFF605at 607.041 kb on + strand, within GFF605at 607.041 kb on + strand, within GFF605at 607.041 kb on + strand, within GFF605at 607.041 kb on + strand, within GFF605at 607.047 kb on - strand, within GFF605at 607.047 kb on - strand, within GFF605at 607.049 kb on - strand, within GFF605at 607.049 kb on - strand, within GFF605at 607.049 kb on - strand, within GFF605at 607.049 kb on - strand, within GFF605at 607.054 kb on - strand, within GFF605at 607.064 kb on - strand, within GFF605at 607.075 kb on + strand, within GFF605at 607.075 kb on + strand, within GFF605at 607.106 kb on - strand, within GFF605at 607.158 kb on + strand, within GFF605at 607.161 kb on - strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.303 kb on + strandat 607.308 kb on + strandat 607.311 kb on - strandat 607.311 kb on - strandat 607.311 kb on - strandat 607.311 kb on - strandat 607.313 kb on + strandat 607.313 kb on + strandat 607.313 kb on + strandat 607.313 kb on + strandat 607.318 kb on + strandat 607.318 kb on + strandat 607.321 kb on - strandat 607.321 kb on - strandat 607.321 kb on - strandat 607.326 kb on - strandat 607.326 kb on - strandat 607.330 kb on + strandat 607.345 kb on + strandat 607.350 kb on + strandat 607.350 kb on + strandat 607.356 kb on + strandat 607.373 kb on + strandat 607.401 kb on + strand, within GFF606at 607.401 kb on - strand, within GFF606at 607.412 kb on - strand, within GFF606at 607.412 kb on - strand, within GFF606at 607.423 kb on - strand, within GFF606at 607.425 kb on + strand, within GFF606at 607.459 kb on - strand, within GFF606at 607.503 kb on + strand, within GFF606at 607.535 kb on + strand, within GFF606at 607.548 kb on - strand, within GFF606at 607.577 kb on + strand, within GFF606at 607.592 kb on + strand, within GFF606at 607.592 kb on + strand, within GFF606at 607.592 kb on + strand, within GFF606at 607.592 kb on + strand, within GFF606at 607.592 kb on + strand, within GFF606at 607.600 kb on - strand, within GFF606at 607.600 kb on - strand, within GFF606at 607.600 kb on - strand, within GFF606at 607.610 kb on - strand, within GFF606at 607.629 kb on + strand, within GFF606at 607.629 kb on + strand, within GFF606at 607.637 kb on - strand, within GFF606at 607.637 kb on - strand, within GFF606at 607.637 kb on - strand, within GFF606at 607.648 kb on - strand, within GFF606at 607.656 kb on - strand, within GFF606

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
remove
605,621 + -1.0
605,626 + +0.9
605,629 - -0.2
605,633 + +0.5
606,333 - -0.5
606,333 - -0.7
606,333 - +0.8
606,333 - -0.2
606,339 + -1.8
606,340 - +0.9
606,340 - -0.8
606,343 + +0.7
606,343 + -1.2
606,343 + -0.7
606,344 + +0.3
606,351 - +0.0
606,351 - -0.6
606,351 - -1.5
606,358 - -0.3
606,366 + -0.1
606,366 + -0.6
606,366 + -1.5
606,378 - -1.5
606,398 + GFF604 0.15 -2.7
606,406 - GFF604 0.17 -1.7
606,438 - GFF604 0.28 -0.0
606,441 + GFF604 0.29 +0.8
606,442 + GFF604 0.29 +0.0
606,442 + GFF604 0.29 -2.3
606,450 - GFF604 0.32 +0.1
606,484 - GFF604 0.43 +0.1
606,497 - GFF604 0.47 -1.3
606,499 - GFF604 0.48 -0.2
606,500 + GFF604 0.48 +0.5
606,500 + GFF604 0.48 -0.2
606,515 + GFF604 0.53 -0.8
606,537 - GFF604 0.60 -0.0
606,545 + GFF604 0.63 +1.4
606,552 + GFF604 0.65 -0.2
606,562 - GFF604 0.69 -1.5
606,562 - GFF604 0.69 +1.3
606,562 - GFF604 0.69 -0.4
606,562 - GFF604 0.69 +0.4
606,596 - GFF604 0.80 -2.3
606,618 + GFF604 0.87 -1.0
606,619 + GFF604 0.87 -2.1
606,627 - -0.2
606,644 - +1.1
606,652 + -0.8
606,658 - -0.2
606,661 + -0.3
606,666 + -0.2
606,669 - +1.0
606,674 - -0.5
606,675 + +1.2
606,679 - -0.3
606,683 - +0.7
606,685 + +1.0
606,687 + +1.3
606,688 - +0.2
606,693 - +1.6
606,703 + -1.6
606,711 - +0.9
606,716 + +0.1
606,724 - GFF605 0.11 +1.2
606,731 - GFF605 0.12 +0.0
606,737 - GFF605 0.13 +1.2
606,737 - GFF605 0.13 -0.1
606,739 + GFF605 0.14 +0.2
606,747 - GFF605 0.15 -0.0
606,811 + GFF605 0.27 -0.4
606,816 + GFF605 0.28 +0.8
606,841 - GFF605 0.32 -0.3
606,841 - GFF605 0.32 +1.1
606,848 - GFF605 0.34 -1.5
606,856 + GFF605 0.35 -0.1
606,857 + GFF605 0.35 -1.6
606,858 + GFF605 0.35 +0.2
606,863 + GFF605 0.36 -1.6
606,863 + GFF605 0.36 -0.8
606,863 + GFF605 0.36 -1.1
606,871 - GFF605 0.38 -1.1
606,871 - GFF605 0.38 +0.8
606,882 - GFF605 0.40 -0.8
606,884 + GFF605 0.40 -1.2
606,889 + GFF605 0.41 -1.8
606,897 - GFF605 0.42 +0.1
606,938 + GFF605 0.50 -0.3
606,980 + GFF605 0.57 +0.6
606,980 + GFF605 0.57 +0.0
606,980 + GFF605 0.57 +0.7
606,988 + GFF605 0.59 -1.6
607,004 + GFF605 0.62 -1.2
607,024 + GFF605 0.65 -1.2
607,024 + GFF605 0.65 +0.6
607,024 + GFF605 0.65 -1.7
607,024 + GFF605 0.65 -0.6
607,024 + GFF605 0.65 -0.3
607,024 + GFF605 0.65 -0.9
607,024 + GFF605 0.65 -3.6
607,024 + GFF605 0.65 +1.1
607,024 + GFF605 0.65 -0.6
607,024 + GFF605 0.65 -0.0
607,024 + GFF605 0.65 -0.2
607,025 - GFF605 0.66 -1.5
607,025 - GFF605 0.66 -0.1
607,029 + GFF605 0.66 -0.1
607,032 - GFF605 0.67 -0.3
607,032 - GFF605 0.67 +0.3
607,032 - GFF605 0.67 +0.1
607,032 - GFF605 0.67 +0.3
607,032 - GFF605 0.67 +0.1
607,032 - GFF605 0.67 +0.7
607,032 - GFF605 0.67 +0.3
607,032 - GFF605 0.67 -0.5
607,032 - GFF605 0.67 -0.9
607,032 - GFF605 0.67 +0.3
607,032 - GFF605 0.67 +0.3
607,037 + GFF605 0.68 +0.7
607,037 + GFF605 0.68 -1.4
607,037 + GFF605 0.68 -0.3
607,041 + GFF605 0.68 +0.4
607,041 + GFF605 0.68 -1.2
607,041 + GFF605 0.68 -2.3
607,041 + GFF605 0.68 +0.9
607,047 - GFF605 0.70 +0.2
607,047 - GFF605 0.70 -0.6
607,049 - GFF605 0.70 +0.2
607,049 - GFF605 0.70 +0.3
607,049 - GFF605 0.70 -0.2
607,049 - GFF605 0.70 -0.1
607,054 - GFF605 0.71 +0.5
607,064 - GFF605 0.73 +0.5
607,075 + GFF605 0.75 +1.2
607,075 + GFF605 0.75 +0.3
607,106 - GFF605 0.80 +1.1
607,158 + GFF605 0.90 -1.3
607,161 - +0.0
607,303 + -0.3
607,303 + +0.5
607,303 + +1.1
607,303 + +0.3
607,303 + +0.3
607,303 + +1.7
607,303 + -0.3
607,308 + +0.7
607,311 - +0.8
607,311 - -2.5
607,311 - +0.2
607,311 - +0.3
607,313 + -0.9
607,313 + +0.1
607,313 + +1.2
607,313 + -0.9
607,318 + -1.8
607,318 + +0.3
607,321 - -0.2
607,321 - -2.6
607,321 - +0.9
607,326 - -0.4
607,326 - +1.2
607,330 + -0.5
607,345 + -1.8
607,350 + -0.5
607,350 + -2.6
607,356 + +0.4
607,373 + -0.9
607,401 + GFF606 0.15 -1.3
607,401 - GFF606 0.15 -0.9
607,412 - GFF606 0.18 -2.3
607,412 - GFF606 0.18 -0.7
607,423 - GFF606 0.20 -0.1
607,425 + GFF606 0.21 +0.1
607,459 - GFF606 0.29 +0.5
607,503 + GFF606 0.39 +0.1
607,535 + GFF606 0.46 -0.6
607,548 - GFF606 0.49 -0.0
607,577 + GFF606 0.56 -0.9
607,592 + GFF606 0.59 +0.3
607,592 + GFF606 0.59 -0.6
607,592 + GFF606 0.59 -0.2
607,592 + GFF606 0.59 -0.3
607,592 + GFF606 0.59 -2.0
607,600 - GFF606 0.61 -0.2
607,600 - GFF606 0.61 -0.1
607,600 - GFF606 0.61 +0.0
607,610 - GFF606 0.63 -0.6
607,629 + GFF606 0.68 -0.6
607,629 + GFF606 0.68 -1.6
607,637 - GFF606 0.70 -1.3
607,637 - GFF606 0.70 +0.4
607,637 - GFF606 0.70 -0.5
607,648 - GFF606 0.72 -2.8
607,656 - GFF606 0.74 -1.6

Or see this region's nucleotide sequence