Strain Fitness in Sphingobium sp. HT1-2 around GFF5415

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,387,773	-				-0.5
5,387,773	-				+0.3
5,387,773	-				-1.0
5,387,773	-				-1.0
5,387,800	-				+0.5
5,387,805	+				-0.1
5,387,805	+				-0.1
5,387,805	-				-1.4
5,387,811	+				-0.5
5,387,811	+				+0.4
5,387,811	+				-1.9
5,387,811	+				-0.1
5,387,811	+				-1.8
5,387,811	+				-0.4
5,387,811	+				-3.0
5,387,811	+				-0.7
5,387,811	+				-1.4
5,387,811	+				-1.2
5,387,811	+				-0.5
5,387,812	+				+0.0
5,387,812	+				-1.6
5,387,812	+				-1.2
5,387,812	+				-0.7
5,387,812	+				-2.2
5,387,812	+				-1.7
5,387,812	+				-1.1
5,387,812	+				-1.6
5,387,812	+				-0.9
5,387,813	-				-0.5
5,387,813	-				-0.0
5,387,813	-				-3.2
5,387,818	+				-1.1
5,387,818	+				-1.1
5,387,819	-				+0.0
5,387,819	-				-0.3
5,387,819	-				-0.4
5,387,819	-				+0.4
5,387,819	-				-0.4
5,387,819	-				+1.0
5,387,819	-				+0.0
5,387,819	-				-0.5
5,387,819	-				-1.0
5,387,819	-				+0.2
5,387,819	-				-0.0
5,387,819	-				-2.4
5,387,819	-				-0.4
5,387,819	-				-2.1
5,387,819	-				-1.0
5,387,819	-				-0.4
5,387,819	-				+0.5
5,387,819	-				-1.5
5,387,819	-				+0.0
5,387,820	-				-0.1
5,387,820	-				-0.3
5,387,820	-				-1.2
5,387,820	-				-2.1
5,387,820	-				-0.2
5,387,820	-				+0.3
5,387,820	-				-0.2
5,387,820	-				+1.6
5,387,820	-				-0.2
5,387,820	-				+0.4
5,387,820	-				-0.4
5,387,820	-				-0.7
5,387,820	-				-0.1
5,387,820	-				-0.8
5,387,820	-				-0.5
5,387,820	-				+1.2
5,387,820	-				-0.3
5,387,826	-				-0.1
5,387,826	-				-1.3
5,387,828	+				-0.6
5,387,828	+				-1.8
5,387,828	+				+0.1
5,387,834	-				+0.3
5,387,836	-				+0.6
5,387,836	-				-0.6
5,387,854	+				+0.7
5,387,866	+				-1.1
5,387,876	+		GFF5414	0.11	+0.4
5,387,883	-		GFF5414	0.13	+0.1
5,387,889	-		GFF5414	0.14	-2.2
5,387,891	+		GFF5414	0.14	+0.7
5,387,905	-		GFF5414	0.17	+0.8
5,387,905	-		GFF5414	0.17	+0.3
5,387,905	-		GFF5414	0.17	-0.1
5,387,907	+		GFF5414	0.18	-0.1
5,387,928	+		GFF5414	0.22	-1.1
5,387,944	-		GFF5414	0.25	+0.4
5,387,962	+		GFF5414	0.29	-1.6
5,387,970	-		GFF5414	0.31	-0.5
5,387,970	-		GFF5414	0.31	-0.3
5,387,970	-		GFF5414	0.31	-0.6
5,387,993	+		GFF5414	0.36	-0.1
5,387,993	+		GFF5414	0.36	+0.0
5,387,993	+		GFF5414	0.36	-0.6
5,387,993	+		GFF5414	0.36	-0.6
5,387,993	+		GFF5414	0.36	+0.4
5,387,993	+		GFF5414	0.36	+1.2
5,387,993	+		GFF5414	0.36	-1.1
5,387,993	+		GFF5414	0.36	+0.5
5,387,993	+		GFF5414	0.36	-0.7
5,387,993	+		GFF5414	0.36	-1.8
5,387,993	+		GFF5414	0.36	-1.8
5,387,993	+		GFF5414	0.36	-0.6
5,387,993	+		GFF5414	0.36	+0.6
5,387,993	+		GFF5414	0.36	-0.0
5,387,993	+		GFF5414	0.36	+0.4
5,387,993	+		GFF5414	0.36	+0.3
5,387,993	+		GFF5414	0.36	+0.2
5,387,993	+		GFF5414	0.36	-2.0
5,387,993	+		GFF5414	0.36	+0.5
5,387,993	+		GFF5414	0.36	-0.6
5,387,998	-		GFF5414	0.37	+0.8
5,388,001	-		GFF5414	0.37	-0.6
5,388,001	-		GFF5414	0.37	-2.6
5,388,001	-		GFF5414	0.37	-0.1
5,388,001	-		GFF5414	0.37	-2.0
5,388,001	-		GFF5414	0.37	-0.3
5,388,001	-		GFF5414	0.37	-1.0
5,388,001	-		GFF5414	0.37	+1.1
5,388,001	-		GFF5414	0.37	-1.1
5,388,001	-		GFF5414	0.37	-0.3
5,388,001	-		GFF5414	0.37	-0.1
5,388,001	-		GFF5414	0.37	-3.1
5,388,001	-		GFF5414	0.37	-1.1
5,388,001	-		GFF5414	0.37	+0.1
5,388,001	-		GFF5414	0.37	+0.3
5,388,001	-		GFF5414	0.37	+0.7
5,388,001	-		GFF5414	0.37	-0.1
5,388,001	-		GFF5414	0.37	-1.1
5,388,001	-		GFF5414	0.37	+0.5
5,388,001	-		GFF5414	0.37	-2.5
5,388,001	-		GFF5414	0.37	-0.6
5,388,001	-		GFF5414	0.37	-0.5
5,388,001	-		GFF5414	0.37	-1.8
5,388,003	+		GFF5414	0.38	+0.7
5,388,003	+		GFF5414	0.38	+0.0
5,388,003	+		GFF5414	0.38	+0.0
5,388,003	+		GFF5414	0.38	-1.8
5,388,003	+		GFF5414	0.38	+1.2
5,388,003	+		GFF5414	0.38	+1.1
5,388,011	-		GFF5414	0.39	+0.4
5,388,011	-		GFF5414	0.39	-2.1
5,388,011	-		GFF5414	0.39	-3.4
5,388,011	-		GFF5414	0.39	+0.7
5,388,011	-		GFF5414	0.39	-0.1
5,388,011	-		GFF5414	0.39	-1.6
5,388,011	-		GFF5414	0.39	-2.1
5,388,060	+		GFF5414	0.49	-1.1
5,388,068	-		GFF5414	0.51	-1.1
5,388,087	+		GFF5414	0.55	+0.6
5,388,120	+		GFF5414	0.62	-2.6
5,388,125	+		GFF5414	0.63	+0.1
5,388,133	+		GFF5414	0.65	+0.1
5,388,135	+		GFF5414	0.65	-0.9
5,388,135	+		GFF5414	0.65	+0.5
5,388,135	+		GFF5414	0.65	-1.0
5,388,135	+		GFF5414	0.65	-1.5
5,388,143	-		GFF5414	0.67	-0.1
5,388,151	+		GFF5414	0.68	-0.9
5,388,152	-		GFF5414	0.69	-0.9
5,388,152	-		GFF5414	0.69	-0.7
5,388,158	-		GFF5414	0.70	-0.4
5,388,159	+		GFF5414	0.70	+0.2
5,388,159	+		GFF5414	0.70	-2.0
5,388,159	+		GFF5414	0.70	-0.5
5,388,167	+		GFF5414	0.72	-0.4
5,388,169	+		GFF5414	0.72	-1.3
5,388,169	+		GFF5414	0.72	+0.5
5,388,169	+		GFF5414	0.72	-0.3
5,388,169	+		GFF5414	0.72	-0.9
5,388,169	+		GFF5414	0.72	-1.5
5,388,169	+		GFF5414	0.72	-0.1
5,388,170	-		GFF5414	0.72	+0.3
5,388,177	-		GFF5414	0.74	+0.6
5,388,177	-		GFF5414	0.74	+1.7
5,388,227	+		GFF5414	0.84	-0.8
5,388,227	-		GFF5414	0.84	-0.3
5,388,235	-		GFF5414	0.86	+1.7
5,388,259	+				-1.2
5,388,259	+				+0.4
5,388,259	+				-0.8
5,388,259	+				+0.3
5,388,259	+				-0.4
5,388,259	+				+0.8
5,388,262	-				-1.6
5,388,265	-				-0.1
5,388,267	-				-0.2
5,388,267	-				-2.6
5,388,267	-				+0.2
5,388,284	+				-0.0
5,388,304	+				+0.5
5,388,304	+				-0.1
5,388,304	+				-0.1
5,388,304	+				-0.1
5,388,304	+				-0.6
5,388,305	+				+0.3
5,388,305	+				+0.3
5,388,305	+				+0.0
5,388,310	+				-2.0
5,388,312	+				+0.4
5,388,312	-				+0.2
5,388,313	-				-0.6
5,388,313	-				-0.3
5,388,313	-				-0.7
5,388,313	-				+1.1
5,388,313	-				-0.6
5,388,320	-				-0.8
5,388,320	-				-1.2
5,388,320	-				-0.8
5,388,320	-				+0.4
5,388,320	-				-0.6
5,388,320	-				-1.9
5,388,320	-				-1.1
5,388,328	+				-1.6
5,388,328	-				+1.0
5,388,338	-				-0.3
5,388,338	-				+0.4
5,388,339	+				-1.0
5,388,346	+				-1.4
5,388,346	+				-1.1
5,388,347	-				-2.5
5,388,347	-				-3.0
5,388,348	-				-0.6
5,388,356	+				+0.7
5,388,374	+				-0.2
5,388,375	+				-0.6
5,388,380	+				-1.7
5,388,381	+				-2.7
5,388,382	-				-0.5
5,388,382	-				-0.4
5,388,385	+				+0.1
5,388,390	-				+0.7
5,388,393	-				-1.3
5,388,404	-				-1.0
5,388,415	+				-1.4
5,388,415	+				+0.1
5,388,418	-				+1.5
5,388,418	-				+0.0
5,388,420	+				-0.1
5,388,420	+				-1.6
5,388,430	-				-0.5
5,388,440	-				-0.1
5,388,445	+				-2.1
5,388,461	+				-0.3
5,388,549	-				+0.2
5,388,551	-				+1.1
5,388,567	+				-2.7
5,388,575	-				-0.9
5,388,575	-				-2.8
5,388,597	+		GFF5415	0.12	-0.3
5,388,600	-		GFF5415	0.13	+0.8
5,388,607	-		GFF5415	0.16	-0.1
5,388,610	+		GFF5415	0.17	-1.5
5,388,610	+		GFF5415	0.17	-1.7
5,388,633	-		GFF5415	0.25	-1.8
5,388,643	-		GFF5415	0.28	+0.5
5,388,643	-		GFF5415	0.28	-1.6
5,388,643	-		GFF5415	0.28	-0.6
5,388,643	-		GFF5415	0.28	-1.7
5,388,643	-		GFF5415	0.28	+1.0
5,388,643	-		GFF5415	0.28	-2.2
5,388,643	-		GFF5415	0.28	-0.9
5,388,643	-		GFF5415	0.28	+1.3
5,388,643	-		GFF5415	0.28	-0.7
5,388,643	-		GFF5415	0.28	+0.5
5,388,643	-		GFF5415	0.28	-0.3
5,388,643	-		GFF5415	0.28	-0.1
5,388,643	-		GFF5415	0.28	+0.1
5,388,643	-		GFF5415	0.28	+1.0
5,388,643	-		GFF5415	0.28	+0.0
5,388,643	-		GFF5415	0.28	+0.6