Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5372 and GFF5373 are separated by 221 nucleotides GFF5373 and GFF5374 are separated by 163 nucleotides GFF5374 and GFF5375 overlap by 4 nucleotides
GFF5372 - Chaperone protein HtpG, at 5,354,611 to 5,356,497
GFF5372
GFF5373 - Mobile element protein, at 5,356,719 to 5,357,111
GFF5373
GFF5374 - plasmid stabilization system protein, at 5,357,275 to 5,357,568
GFF5374
GFF5375 - hypothetical protein, at 5,357,565 to 5,357,834
GFF5375
Position (kb) 5356
5357
5358 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5355.721 kb on - strand, within GFF5372 at 5355.754 kb on + strand, within GFF5372 at 5355.762 kb on - strand, within GFF5372 at 5355.762 kb on - strand, within GFF5372 at 5355.778 kb on + strand, within GFF5372 at 5355.799 kb on + strand, within GFF5372 at 5355.799 kb on + strand, within GFF5372 at 5355.807 kb on - strand, within GFF5372 at 5355.807 kb on - strand, within GFF5372 at 5355.809 kb on - strand, within GFF5372 at 5355.814 kb on + strand, within GFF5372 at 5355.839 kb on - strand, within GFF5372 at 5355.839 kb on - strand, within GFF5372 at 5355.853 kb on + strand, within GFF5372 at 5355.859 kb on + strand, within GFF5372 at 5355.861 kb on + strand, within GFF5372 at 5355.861 kb on + strand, within GFF5372 at 5355.861 kb on - strand, within GFF5372 at 5355.861 kb on - strand, within GFF5372 at 5355.892 kb on + strand, within GFF5372 at 5355.892 kb on + strand, within GFF5372 at 5355.899 kb on + strand, within GFF5372 at 5355.921 kb on + strand, within GFF5372 at 5355.926 kb on + strand, within GFF5372 at 5355.945 kb on + strand, within GFF5372 at 5355.945 kb on + strand, within GFF5372 at 5355.953 kb on + strand, within GFF5372 at 5355.953 kb on + strand, within GFF5372 at 5355.953 kb on - strand, within GFF5372 at 5355.961 kb on - strand, within GFF5372 at 5355.961 kb on - strand, within GFF5372 at 5355.976 kb on + strand, within GFF5372 at 5355.976 kb on + strand, within GFF5372 at 5355.984 kb on - strand, within GFF5372 at 5355.996 kb on + strand, within GFF5372 at 5356.035 kb on + strand, within GFF5372 at 5356.042 kb on + strand, within GFF5372 at 5356.042 kb on + strand, within GFF5372 at 5356.042 kb on + strand, within GFF5372 at 5356.042 kb on + strand, within GFF5372 at 5356.042 kb on + strand, within GFF5372 at 5356.042 kb on + strand, within GFF5372 at 5356.042 kb on + strand, within GFF5372 at 5356.042 kb on + strand, within GFF5372 at 5356.044 kb on + strand, within GFF5372 at 5356.050 kb on - strand, within GFF5372 at 5356.050 kb on - strand, within GFF5372 at 5356.052 kb on - strand, within GFF5372 at 5356.059 kb on + strand, within GFF5372 at 5356.062 kb on + strand, within GFF5372 at 5356.062 kb on + strand, within GFF5372 at 5356.067 kb on + strand, within GFF5372 at 5356.067 kb on + strand, within GFF5372 at 5356.067 kb on + strand, within GFF5372 at 5356.067 kb on + strand, within GFF5372 at 5356.070 kb on - strand, within GFF5372 at 5356.070 kb on - strand, within GFF5372 at 5356.072 kb on + strand, within GFF5372 at 5356.072 kb on + strand, within GFF5372 at 5356.072 kb on + strand, within GFF5372 at 5356.072 kb on + strand, within GFF5372 at 5356.074 kb on + strand, within GFF5372 at 5356.074 kb on + strand, within GFF5372 at 5356.075 kb on - strand, within GFF5372 at 5356.075 kb on - strand, within GFF5372 at 5356.077 kb on - strand, within GFF5372 at 5356.080 kb on - strand, within GFF5372 at 5356.080 kb on - strand, within GFF5372 at 5356.080 kb on - strand, within GFF5372 at 5356.112 kb on + strand, within GFF5372 at 5356.112 kb on - strand, within GFF5372 at 5356.117 kb on - strand, within GFF5372 at 5356.132 kb on + strand, within GFF5372 at 5356.148 kb on - strand, within GFF5372 at 5356.169 kb on - strand, within GFF5372 at 5356.179 kb on - strand, within GFF5372 at 5356.184 kb on - strand, within GFF5372 at 5356.219 kb on + strand, within GFF5372 at 5356.227 kb on - strand, within GFF5372 at 5356.229 kb on - strand, within GFF5372 at 5356.234 kb on + strand, within GFF5372 at 5356.236 kb on + strand, within GFF5372 at 5356.244 kb on - strand, within GFF5372 at 5356.260 kb on + strand, within GFF5372 at 5356.260 kb on + strand, within GFF5372 at 5356.260 kb on + strand, within GFF5372 at 5356.268 kb on - strand, within GFF5372 at 5356.299 kb on + strand, within GFF5372 at 5356.328 kb on + strand at 5356.345 kb on + strand at 5356.345 kb on + strand at 5356.345 kb on + strand at 5356.348 kb on - strand at 5356.428 kb on - strand at 5356.429 kb on - strand at 5356.486 kb on + strand at 5356.486 kb on + strand at 5356.494 kb on - strand at 5356.566 kb on + strand at 5356.616 kb on - strand at 5356.624 kb on - strand at 5356.629 kb on - strand at 5356.640 kb on - strand at 5356.644 kb on - strand at 5356.689 kb on - strand at 5356.763 kb on + strand, within GFF5373 at 5356.791 kb on + strand, within GFF5373 at 5356.792 kb on + strand, within GFF5373 at 5356.808 kb on - strand, within GFF5373 at 5356.840 kb on - strand, within GFF5373 at 5356.847 kb on - strand, within GFF5373 at 5356.865 kb on + strand, within GFF5373 at 5356.872 kb on + strand, within GFF5373 at 5356.872 kb on + strand, within GFF5373 at 5356.936 kb on + strand, within GFF5373 at 5356.936 kb on + strand, within GFF5373 at 5356.944 kb on - strand, within GFF5373 at 5356.946 kb on + strand, within GFF5373 at 5356.951 kb on + strand, within GFF5373 at 5356.951 kb on + strand, within GFF5373 at 5356.953 kb on + strand, within GFF5373 at 5356.959 kb on - strand, within GFF5373 at 5356.961 kb on - strand, within GFF5373 at 5356.962 kb on + strand, within GFF5373 at 5356.962 kb on + strand, within GFF5373 at 5356.962 kb on + strand, within GFF5373 at 5356.962 kb on + strand, within GFF5373 at 5356.962 kb on + strand, within GFF5373 at 5356.970 kb on - strand, within GFF5373 at 5356.970 kb on - strand, within GFF5373 at 5356.970 kb on - strand, within GFF5373 at 5356.971 kb on - strand, within GFF5373 at 5357.021 kb on + strand, within GFF5373 at 5357.021 kb on + strand, within GFF5373 at 5357.026 kb on + strand, within GFF5373 at 5357.038 kb on + strand, within GFF5373 at 5357.070 kb on - strand, within GFF5373 at 5357.097 kb on - strand at 5357.136 kb on + strand at 5357.155 kb on + strand at 5357.165 kb on + strand at 5357.165 kb on + strand at 5357.170 kb on + strand at 5357.182 kb on + strand at 5357.182 kb on + strand at 5357.182 kb on + strand at 5357.182 kb on - strand at 5357.190 kb on - strand at 5357.190 kb on - strand at 5357.190 kb on - strand at 5357.190 kb on - strand at 5357.206 kb on + strand at 5357.209 kb on - strand at 5357.222 kb on + strand at 5357.223 kb on - strand at 5357.228 kb on - strand at 5357.229 kb on - strand at 5357.254 kb on + strand at 5357.254 kb on + strand at 5357.267 kb on - strand at 5357.294 kb on - strand at 5357.301 kb on - strand at 5357.309 kb on - strand, within GFF5374 at 5357.309 kb on - strand, within GFF5374 at 5357.309 kb on - strand, within GFF5374 at 5357.320 kb on - strand, within GFF5374 at 5357.369 kb on - strand, within GFF5374 at 5357.400 kb on + strand, within GFF5374 at 5357.400 kb on + strand, within GFF5374 at 5357.400 kb on + strand, within GFF5374 at 5357.400 kb on + strand, within GFF5374 at 5357.400 kb on + strand, within GFF5374 at 5357.400 kb on + strand, within GFF5374 at 5357.400 kb on + strand, within GFF5374 at 5357.400 kb on + strand, within GFF5374 at 5357.400 kb on + strand, within GFF5374 at 5357.400 kb on + strand, within GFF5374 at 5357.400 kb on + strand, within GFF5374 at 5357.408 kb on - strand, within GFF5374 at 5357.408 kb on - strand, within GFF5374 at 5357.408 kb on - strand, within GFF5374 at 5357.408 kb on - strand, within GFF5374 at 5357.408 kb on - strand, within GFF5374 at 5357.408 kb on - strand, within GFF5374 at 5357.408 kb on - strand, within GFF5374 at 5357.416 kb on - strand, within GFF5374 at 5357.427 kb on + strand, within GFF5374 at 5357.434 kb on - strand, within GFF5374 at 5357.435 kb on - strand, within GFF5374 at 5357.467 kb on + strand, within GFF5374 at 5357.467 kb on + strand, within GFF5374 at 5357.467 kb on + strand, within GFF5374 at 5357.469 kb on + strand, within GFF5374 at 5357.475 kb on - strand, within GFF5374 at 5357.475 kb on - strand, within GFF5374 at 5357.475 kb on - strand, within GFF5374 at 5357.480 kb on - strand, within GFF5374 at 5357.504 kb on + strand, within GFF5374 at 5357.504 kb on + strand, within GFF5374 at 5357.504 kb on + strand, within GFF5374 at 5357.504 kb on + strand, within GFF5374 at 5357.504 kb on + strand, within GFF5374 at 5357.512 kb on - strand, within GFF5374 at 5357.512 kb on - strand, within GFF5374 at 5357.512 kb on - strand, within GFF5374 at 5357.512 kb on - strand, within GFF5374 at 5357.516 kb on + strand, within GFF5374 at 5357.516 kb on + strand, within GFF5374 at 5357.552 kb on + strand at 5357.580 kb on + strand at 5357.596 kb on + strand, within GFF5375 at 5357.759 kb on - strand, within GFF5375 at 5357.936 kb on + strand at 5357.937 kb on - strand at 5357.944 kb on - strand at 5357.953 kb on + strand at 5357.975 kb on - strand at 5357.975 kb on - strand at 5357.997 kb on + strand at 5357.997 kb on + strand at 5357.997 kb on + strand at 5357.997 kb on + strand at 5358.005 kb on - strand at 5358.005 kb on - strand at 5358.005 kb on - strand at 5358.005 kb on - strand at 5358.005 kb on - strand at 5358.005 kb on - strand at 5358.005 kb on - strand at 5358.005 kb on - strand at 5358.014 kb on + strand at 5358.032 kb on - strand at 5358.034 kb on + strand at 5358.040 kb on + strand at 5358.040 kb on + strand at 5358.040 kb on + strand at 5358.045 kb on + strand at 5358.050 kb on + strand at 5358.057 kb on + strand at 5358.059 kb on - strand at 5358.068 kb on - strand at 5358.109 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 5,355,721 - GFF5372 0.59 -0.5 5,355,754 + GFF5372 0.61 +0.0 5,355,762 - GFF5372 0.61 -0.1 5,355,762 - GFF5372 0.61 -2.0 5,355,778 + GFF5372 0.62 -1.0 5,355,799 + GFF5372 0.63 -1.2 5,355,799 + GFF5372 0.63 -2.7 5,355,807 - GFF5372 0.63 +0.1 5,355,807 - GFF5372 0.63 -1.5 5,355,809 - GFF5372 0.63 -0.1 5,355,814 + GFF5372 0.64 +0.3 5,355,839 - GFF5372 0.65 -2.4 5,355,839 - GFF5372 0.65 +0.3 5,355,853 + GFF5372 0.66 +0.6 5,355,859 + GFF5372 0.66 +0.3 5,355,861 + GFF5372 0.66 -0.8 5,355,861 + GFF5372 0.66 +0.3 5,355,861 - GFF5372 0.66 -1.4 5,355,861 - GFF5372 0.66 -0.8 5,355,892 + GFF5372 0.68 +0.3 5,355,892 + GFF5372 0.68 -1.5 5,355,899 + GFF5372 0.68 +0.4 5,355,921 + GFF5372 0.69 +0.2 5,355,926 + GFF5372 0.70 -0.3 5,355,945 + GFF5372 0.71 -1.8 5,355,945 + GFF5372 0.71 -0.1 5,355,953 + GFF5372 0.71 -0.4 5,355,953 + GFF5372 0.71 +0.1 5,355,953 - GFF5372 0.71 +0.9 5,355,961 - GFF5372 0.72 +0.1 5,355,961 - GFF5372 0.72 +1.3 5,355,976 + GFF5372 0.72 +1.5 5,355,976 + GFF5372 0.72 +0.3 5,355,984 - GFF5372 0.73 -1.5 5,355,996 + GFF5372 0.73 -2.2 5,356,035 + GFF5372 0.75 +0.1 5,356,042 + GFF5372 0.76 +0.7 5,356,042 + GFF5372 0.76 -0.5 5,356,042 + GFF5372 0.76 +0.2 5,356,042 + GFF5372 0.76 -0.7 5,356,042 + GFF5372 0.76 +1.2 5,356,042 + GFF5372 0.76 -0.6 5,356,042 + GFF5372 0.76 +0.6 5,356,042 + GFF5372 0.76 -0.5 5,356,044 + GFF5372 0.76 -0.7 5,356,050 - GFF5372 0.76 +1.0 5,356,050 - GFF5372 0.76 -2.4 5,356,052 - GFF5372 0.76 +0.5 5,356,059 + GFF5372 0.77 -0.5 5,356,062 + GFF5372 0.77 -0.8 5,356,062 + GFF5372 0.77 +0.2 5,356,067 + GFF5372 0.77 -1.0 5,356,067 + GFF5372 0.77 -1.2 5,356,067 + GFF5372 0.77 -0.1 5,356,067 + GFF5372 0.77 -0.6 5,356,070 - GFF5372 0.77 +0.4 5,356,070 - GFF5372 0.77 -1.0 5,356,072 + GFF5372 0.77 -1.1 5,356,072 + GFF5372 0.77 -0.0 5,356,072 + GFF5372 0.77 -1.0 5,356,072 + GFF5372 0.77 -1.5 5,356,074 + GFF5372 0.78 -3.0 5,356,074 + GFF5372 0.78 -0.5 5,356,075 - GFF5372 0.78 -0.6 5,356,075 - GFF5372 0.78 +0.2 5,356,077 - GFF5372 0.78 +0.5 5,356,080 - GFF5372 0.78 -1.5 5,356,080 - GFF5372 0.78 -1.6 5,356,080 - GFF5372 0.78 -0.1 5,356,112 + GFF5372 0.80 -0.3 5,356,112 - GFF5372 0.80 +1.3 5,356,117 - GFF5372 0.80 +1.4 5,356,132 + GFF5372 0.81 -0.0 5,356,148 - GFF5372 0.81 +0.7 5,356,169 - GFF5372 0.83 -1.1 5,356,179 - GFF5372 0.83 +0.7 5,356,184 - GFF5372 0.83 -0.8 5,356,219 + GFF5372 0.85 -0.8 5,356,227 - GFF5372 0.86 -0.3 5,356,229 - GFF5372 0.86 +0.2 5,356,234 + GFF5372 0.86 -0.2 5,356,236 + GFF5372 0.86 -0.2 5,356,244 - GFF5372 0.87 +1.9 5,356,260 + GFF5372 0.87 -0.5 5,356,260 + GFF5372 0.87 +1.1 5,356,260 + GFF5372 0.87 -0.8 5,356,268 - GFF5372 0.88 -0.4 5,356,299 + GFF5372 0.89 +1.0 5,356,328 + -0.8 5,356,345 + +1.0 5,356,345 + -1.7 5,356,345 + +0.0 5,356,348 - -0.2 5,356,428 - +0.1 5,356,429 - -0.1 5,356,486 + +0.5 5,356,486 + +1.3 5,356,494 - +0.0 5,356,566 + -0.0 5,356,616 - -0.7 5,356,624 - +0.6 5,356,629 - -0.1 5,356,640 - -0.7 5,356,644 - +1.2 5,356,689 - -0.4 5,356,763 + GFF5373 0.11 +0.3 5,356,791 + GFF5373 0.18 -2.1 5,356,792 + GFF5373 0.19 -0.7 5,356,808 - GFF5373 0.23 +0.1 5,356,840 - GFF5373 0.31 +0.1 5,356,847 - GFF5373 0.33 -0.7 5,356,865 + GFF5373 0.37 +1.1 5,356,872 + GFF5373 0.39 +1.4 5,356,872 + GFF5373 0.39 +0.4 5,356,936 + GFF5373 0.55 -1.1 5,356,936 + GFF5373 0.55 +1.0 5,356,944 - GFF5373 0.57 -0.4 5,356,946 + GFF5373 0.58 -1.5 5,356,951 + GFF5373 0.59 +0.7 5,356,951 + GFF5373 0.59 +1.1 5,356,953 + GFF5373 0.60 +0.2 5,356,959 - GFF5373 0.61 +0.4 5,356,961 - GFF5373 0.62 +0.5 5,356,962 + GFF5373 0.62 +1.7 5,356,962 + GFF5373 0.62 +1.0 5,356,962 + GFF5373 0.62 -0.5 5,356,962 + GFF5373 0.62 +0.4 5,356,962 + GFF5373 0.62 +1.4 5,356,970 - GFF5373 0.64 -0.2 5,356,970 - GFF5373 0.64 -1.0 5,356,970 - GFF5373 0.64 +0.5 5,356,971 - GFF5373 0.64 +1.4 5,357,021 + GFF5373 0.77 -0.7 5,357,021 + GFF5373 0.77 +0.5 5,357,026 + GFF5373 0.78 +0.6 5,357,038 + GFF5373 0.81 +1.6 5,357,070 - GFF5373 0.89 +0.5 5,357,097 - +1.5 5,357,136 + -0.2 5,357,155 + +1.4 5,357,165 + -2.0 5,357,165 + -1.7 5,357,170 + +0.4 5,357,182 + +0.7 5,357,182 + -0.1 5,357,182 + +0.9 5,357,182 - +0.3 5,357,190 - +1.1 5,357,190 - -0.4 5,357,190 - +1.6 5,357,190 - -0.1 5,357,206 + -0.9 5,357,209 - +0.8 5,357,222 + -0.3 5,357,223 - -0.6 5,357,228 - -0.3 5,357,229 - -0.6 5,357,254 + -1.7 5,357,254 + +0.0 5,357,267 - +0.9 5,357,294 - -0.4 5,357,301 - -1.5 5,357,309 - GFF5374 0.12 -0.4 5,357,309 - GFF5374 0.12 +0.5 5,357,309 - GFF5374 0.12 -0.5 5,357,320 - GFF5374 0.15 +1.0 5,357,369 - GFF5374 0.32 +0.1 5,357,400 + GFF5374 0.43 -0.3 5,357,400 + GFF5374 0.43 -1.4 5,357,400 + GFF5374 0.43 +0.6 5,357,400 + GFF5374 0.43 -1.6 5,357,400 + GFF5374 0.43 +0.4 5,357,400 + GFF5374 0.43 -0.1 5,357,400 + GFF5374 0.43 -0.6 5,357,400 + GFF5374 0.43 -0.1 5,357,400 + GFF5374 0.43 +0.1 5,357,400 + GFF5374 0.43 -2.5 5,357,400 + GFF5374 0.43 -1.3 5,357,408 - GFF5374 0.45 -1.7 5,357,408 - GFF5374 0.45 -1.0 5,357,408 - GFF5374 0.45 +1.2 5,357,408 - GFF5374 0.45 +1.0 5,357,408 - GFF5374 0.45 +0.1 5,357,408 - GFF5374 0.45 -1.7 5,357,408 - GFF5374 0.45 -2.1 5,357,416 - GFF5374 0.48 -0.6 5,357,427 + GFF5374 0.52 -2.5 5,357,434 - GFF5374 0.54 +0.4 5,357,435 - GFF5374 0.54 +0.7 5,357,467 + GFF5374 0.65 +1.7 5,357,467 + GFF5374 0.65 +1.2 5,357,467 + GFF5374 0.65 -0.8 5,357,469 + GFF5374 0.66 -0.1 5,357,475 - GFF5374 0.68 -0.2 5,357,475 - GFF5374 0.68 -0.1 5,357,475 - GFF5374 0.68 -0.7 5,357,480 - GFF5374 0.70 +0.7 5,357,504 + GFF5374 0.78 +0.1 5,357,504 + GFF5374 0.78 +0.2 5,357,504 + GFF5374 0.78 +0.2 5,357,504 + GFF5374 0.78 -0.7 5,357,504 + GFF5374 0.78 +0.1 5,357,512 - GFF5374 0.81 +0.3 5,357,512 - GFF5374 0.81 +0.3 5,357,512 - GFF5374 0.81 -0.8 5,357,512 - GFF5374 0.81 +0.7 5,357,516 + GFF5374 0.82 +0.7 5,357,516 + GFF5374 0.82 +0.7 5,357,552 + +0.1 5,357,580 + -0.3 5,357,596 + GFF5375 0.11 -1.0 5,357,759 - GFF5375 0.72 +0.7 5,357,936 + -0.7 5,357,937 - -0.1 5,357,944 - -1.1 5,357,953 + -0.2 5,357,975 - -1.7 5,357,975 - -0.5 5,357,997 + -0.6 5,357,997 + +0.5 5,357,997 + +0.9 5,357,997 + -0.4 5,358,005 - +0.4 5,358,005 - +0.7 5,358,005 - +0.0 5,358,005 - +0.2 5,358,005 - -1.1 5,358,005 - +1.2 5,358,005 - -2.1 5,358,005 - -0.1 5,358,014 + -0.5 5,358,032 - +0.6 5,358,034 + -0.1 5,358,040 + +0.4 5,358,040 + -0.0 5,358,040 + -1.7 5,358,045 + +0.6 5,358,050 + +0.1 5,358,057 + -0.1 5,358,059 - +0.6 5,358,068 - +0.1 5,358,109 + +0.7
Or see this region's nucleotide sequence