Strain Fitness in Sphingobium sp. HT1-2 around GFF5274

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,262,337	+		GFF5273	0.43	-1.0
5,262,340	-		GFF5273	0.44	+0.6
5,262,358	+		GFF5273	0.45	-0.5
5,262,359	-		GFF5273	0.45	-0.3
5,262,361	-		GFF5273	0.45	-1.0
5,262,375	-		GFF5273	0.46	-1.2
5,262,377	+		GFF5273	0.46	+0.9
5,262,377	+		GFF5273	0.46	+0.4
5,262,377	+		GFF5273	0.46	-0.6
5,262,377	+		GFF5273	0.46	+0.0
5,262,406	+		GFF5273	0.48	+0.9
5,262,414	-		GFF5273	0.48	-0.3
5,262,449	+		GFF5273	0.50	+0.4
5,262,449	+		GFF5273	0.50	-0.3
5,262,449	+		GFF5273	0.50	+0.4
5,262,457	-		GFF5273	0.51	-1.1
5,262,459	+		GFF5273	0.51	-1.0
5,262,479	+		GFF5273	0.52	+0.0
5,262,495	-		GFF5273	0.53	-0.7
5,262,503	+		GFF5273	0.54	-1.0
5,262,516	+		GFF5273	0.54	-1.7
5,262,519	-		GFF5273	0.55	-0.7
5,262,535	-		GFF5273	0.56	-0.2
5,262,556	+		GFF5273	0.57	-0.7
5,262,564	+		GFF5273	0.57	-0.2
5,262,572	-		GFF5273	0.58	-0.6
5,262,586	+		GFF5273	0.59	-2.1
5,262,589	-		GFF5273	0.59	+0.1
5,262,600	+		GFF5273	0.59	-1.6
5,262,600	+		GFF5273	0.59	+0.9
5,262,608	-		GFF5273	0.60	+0.1
5,262,609	-		GFF5273	0.60	-0.1
5,262,613	-		GFF5273	0.60	-0.4
5,262,613	-		GFF5273	0.60	-0.1
5,262,613	-		GFF5273	0.60	-1.0
5,262,623	+		GFF5273	0.61	+0.6
5,262,626	-		GFF5273	0.61	-2.1
5,262,626	-		GFF5273	0.61	-1.1
5,262,626	-		GFF5273	0.61	+0.3
5,262,628	+		GFF5273	0.61	-0.1
5,262,691	+		GFF5273	0.65	-0.6
5,262,691	+		GFF5273	0.65	-0.1
5,262,694	-		GFF5273	0.65	+0.9
5,262,696	+		GFF5273	0.65	+0.2
5,262,696	+		GFF5273	0.65	+0.2
5,262,696	+		GFF5273	0.65	-0.5
5,262,696	+		GFF5273	0.65	+0.0
5,262,699	-		GFF5273	0.66	-1.1
5,262,699	-		GFF5273	0.66	+0.7
5,262,699	-		GFF5273	0.66	+0.4
5,262,756	+		GFF5273	0.69	-0.2
5,262,756	+		GFF5273	0.69	-0.4
5,262,756	+		GFF5273	0.69	+0.7
5,262,764	-		GFF5273	0.70	-0.6
5,262,774	+		GFF5273	0.70	-0.2
5,262,783	+		GFF5273	0.71	-0.1
5,262,783	+		GFF5273	0.71	+0.4
5,262,791	-		GFF5273	0.71	-1.8
5,262,804	-		GFF5273	0.72	+1.0
5,262,813	+		GFF5273	0.73	-2.3
5,262,816	-		GFF5273	0.73	-1.8
5,262,831	+		GFF5273	0.74	-1.7
5,262,831	-		GFF5273	0.74	-0.6
5,262,837	+		GFF5273	0.74	-0.8
5,262,845	-		GFF5273	0.75	-0.3
5,262,845	-		GFF5273	0.75	-0.5
5,262,852	-		GFF5273	0.75	-0.5
5,262,859	+		GFF5273	0.75	-0.2
5,262,867	+		GFF5273	0.76	+0.4
5,262,877	-		GFF5273	0.76	+0.3
5,262,899	-		GFF5273	0.78	-0.6
5,262,915	+		GFF5273	0.79	-0.0
5,262,939	+		GFF5273	0.80	-0.3
5,262,939	+		GFF5273	0.80	+0.3
5,262,939	+		GFF5273	0.80	-1.6
5,262,939	+		GFF5273	0.80	+1.2
5,262,939	+		GFF5273	0.80	+0.2
5,262,947	-		GFF5273	0.81	+0.7
5,262,947	-		GFF5273	0.81	-2.1
5,262,968	+		GFF5273	0.82	-0.0
5,262,976	-		GFF5273	0.83	-0.3
5,262,976	-		GFF5273	0.83	-1.8
5,262,980	-		GFF5273	0.83	+0.0
5,262,981	+		GFF5273	0.83	-0.6
5,262,996	+		GFF5273	0.84	+0.4
5,263,079	+		GFF5273	0.89	-1.3
5,263,083	-		GFF5273	0.89	-1.1
5,263,091	+		GFF5273	0.90	-1.1
5,263,091	+		GFF5273	0.90	-1.7
5,263,099	-				-0.6
5,263,099	-				-1.7
5,263,099	-				-1.0
5,263,115	-				+1.2
5,263,120	-				-2.1
5,263,127	-				+0.2
5,263,134	+				+0.5
5,263,134	+				+0.3
5,263,140	+				+1.0
5,263,140	+				-0.4
5,263,148	-				-0.0
5,263,148	-				+0.9
5,263,159	+				+1.4
5,263,159	+				-0.1
5,263,164	+				+1.6
5,263,164	+				-0.3
5,263,164	+				+0.2
5,263,167	-				-0.1
5,263,167	-				+0.2
5,263,184	-				+0.4
5,263,198	-				-0.5
5,263,198	-				+0.3
5,263,210	+				+0.9
5,263,210	+				+0.9
5,263,210	+				-1.7
5,263,218	-				+0.3
5,263,218	-				-0.0
5,263,227	+				+0.4
5,263,227	+				-0.4
5,263,227	+				+0.4
5,263,227	+				-0.8
5,263,227	+				-0.2
5,263,228	-				+0.7
5,263,228	-				-2.0
5,263,230	-				+0.1
5,263,230	-				+1.0
5,263,261	+				+1.3
5,263,285	+				-1.5
5,263,288	-				-0.5
5,263,300	+				+0.4
5,263,300	+				-1.3
5,263,300	+				+0.6
5,263,300	+				+2.2
5,263,300	+				+1.3
5,263,300	+				+0.9
5,263,300	+				+0.1
5,263,300	+				+1.0
5,263,300	+				-0.3
5,263,300	+				+0.5
5,263,300	+				-1.0
5,263,300	+				+0.8
5,263,300	+				+0.6
5,263,300	+				+1.1
5,263,300	+				-0.2
5,263,300	+				-0.1
5,263,300	+				-0.4
5,263,300	+				+0.3
5,263,300	+				-0.4
5,263,300	+				+1.2
5,263,308	-				-0.3
5,263,308	-				-0.1
5,263,308	-				-0.8
5,263,308	-				-0.5
5,263,308	-				-0.1
5,263,308	-				+0.1
5,263,308	-				+0.6
5,263,308	-				-0.3
5,263,308	-				-0.1
5,263,308	-				+0.3
5,263,308	-				-0.3
5,263,308	-				-0.1
5,263,308	-				+0.6
5,263,315	+				+0.2
5,263,379	+				+1.0
5,263,394	+				+0.7
5,263,402	-				-0.7
5,263,402	-				+0.2
5,263,425	+				-0.8
5,263,427	+				-1.0
5,263,454	-				-0.6
5,263,482	-				-0.5
5,263,504	+				-0.6
5,263,549	-				-0.2
5,263,551	+				-1.7
5,263,554	-				+1.2
5,263,597	+				+0.6
5,263,605	-				-0.0
5,263,605	-				+0.1
5,263,612	+				-2.7
5,263,612	+				-1.3
5,263,612	+				-0.6
5,263,612	+				+0.6
5,263,612	+				-0.5
5,263,612	+				+1.0
5,263,612	+				-0.1
5,263,612	+				+0.3
5,263,612	+				+0.3
5,263,612	+				+0.5
5,263,612	+				-1.1
5,263,612	+				+0.8
5,263,612	+				-0.3
5,263,620	-				+0.3
5,263,620	-				-0.5
5,263,620	-				+0.3
5,263,620	-				+1.0
5,263,620	-				-0.2
5,263,620	-				+0.4
5,263,620	-				+0.2
5,263,620	-				-0.5
5,263,620	-				-0.4
5,263,620	-				+0.0
5,263,620	-				-0.1
5,263,620	-				+0.3
5,263,630	+				-0.6
5,263,638	-				-0.7
5,263,638	-				+0.9
5,263,658	+		GFF5274	0.10	+0.1
5,263,659	+		GFF5274	0.10	+1.2
5,263,666	-		GFF5274	0.10	-1.7
5,263,669	-		GFF5274	0.10	+0.0
5,263,687	-		GFF5274	0.11	+0.6
5,263,688	+		GFF5274	0.11	-1.6
5,263,688	+		GFF5274	0.11	-0.3
5,263,705	+		GFF5274	0.12	-0.2
5,263,705	+		GFF5274	0.12	+0.7
5,263,708	-		GFF5274	0.12	+1.2
5,263,713	+		GFF5274	0.12	+0.4
5,263,714	+		GFF5274	0.12	+0.2
5,263,714	-		GFF5274	0.12	+1.1
5,263,724	+		GFF5274	0.12	-0.4
5,263,745	-		GFF5274	0.13	+0.9
5,263,760	+		GFF5274	0.13	+0.0
5,263,765	+		GFF5274	0.13	+0.5
5,263,779	-		GFF5274	0.14	+1.4
5,263,779	-		GFF5274	0.14	+0.7
5,263,779	-		GFF5274	0.14	-1.5
5,263,794	-		GFF5274	0.14	-0.1
5,263,818	-		GFF5274	0.15	+0.3
5,263,833	+		GFF5274	0.16	-2.7
5,263,860	+		GFF5274	0.16	+0.1
5,263,874	+		GFF5274	0.17	-0.8
5,263,877	-		GFF5274	0.17	-1.5
5,263,877	-		GFF5274	0.17	+0.5
5,263,898	-		GFF5274	0.18	-1.5
5,263,902	+		GFF5274	0.18	-0.3
5,263,910	-		GFF5274	0.18	-1.7
5,263,910	-		GFF5274	0.18	-2.1
5,263,910	-		GFF5274	0.18	+0.8
5,263,912	+		GFF5274	0.18	+1.7
5,263,916	+		GFF5274	0.18	+0.6
5,263,920	-		GFF5274	0.18	+0.4
5,263,940	+		GFF5274	0.19	+0.5
5,263,942	+		GFF5274	0.19	+0.3
5,263,949	-		GFF5274	0.19	-1.7
5,263,960	+		GFF5274	0.19	-1.7
5,263,977	+		GFF5274	0.20	-0.9
5,263,985	-		GFF5274	0.20	-1.8
5,263,985	-		GFF5274	0.20	-0.6
5,263,985	-		GFF5274	0.20	+0.4
5,263,989	+		GFF5274	0.20	-0.6
5,263,997	-		GFF5274	0.21	-0.1
5,264,011	+		GFF5274	0.21	-0.7
5,264,024	+		GFF5274	0.21	-0.3
5,264,032	-		GFF5274	0.22	-1.5
5,264,032	-		GFF5274	0.22	+1.4
5,264,037	-		GFF5274	0.22	-1.0
5,264,037	-		GFF5274	0.22	-0.1
5,264,048	+		GFF5274	0.22	+0.0
5,264,075	+		GFF5274	0.23	-1.4
5,264,082	-		GFF5274	0.23	+0.9
5,264,082	-		GFF5274	0.23	+1.3
5,264,138	-		GFF5274	0.25	-2.1
5,264,175	-		GFF5274	0.26	+0.2
5,264,222	-		GFF5274	0.28	-0.1
5,264,229	+		GFF5274	0.28	-1.8
5,264,243	+		GFF5274	0.28	+0.0
5,264,274	+		GFF5274	0.29	-0.6
5,264,274	+		GFF5274	0.29	+0.4
5,264,274	+		GFF5274	0.29	+0.1
5,264,274	+		GFF5274	0.29	-0.4
5,264,274	+		GFF5274	0.29	-0.6
5,264,274	+		GFF5274	0.29	-0.4
5,264,282	-		GFF5274	0.29	-0.0
5,264,302	+		GFF5274	0.30	-1.6
5,264,302	+		GFF5274	0.30	-0.1
5,264,303	+		GFF5274	0.30	-0.4
5,264,310	-		GFF5274	0.30	-0.5
5,264,310	-		GFF5274	0.30	-1.3
5,264,361	+		GFF5274	0.32	-0.2
5,264,361	+		GFF5274	0.32	+0.0
5,264,361	+		GFF5274	0.32	+0.2
5,264,361	+		GFF5274	0.32	-1.3
5,264,361	+		GFF5274	0.32	-1.7
5,264,361	+		GFF5274	0.32	+0.4
5,264,447	+		GFF5274	0.35	+0.1
5,264,455	-		GFF5274	0.35	+0.4
5,264,470	-		GFF5274	0.35	+0.5
5,264,475	+		GFF5274	0.35	+0.1
5,264,488	-		GFF5274	0.36	+0.4
5,264,492	+		GFF5274	0.36	-1.8
5,264,495	-		GFF5274	0.36	+0.1
5,264,500	-		GFF5274	0.36	-0.8
5,264,526	-		GFF5274	0.37	+1.2
5,264,535	-		GFF5274	0.37	-0.1
5,264,545	-		GFF5274	0.38	+0.8
5,264,551	-		GFF5274	0.38	+0.3
5,264,587	+		GFF5274	0.39	+0.3
5,264,595	+		GFF5274	0.39	-1.8
5,264,595	+		GFF5274	0.39	-1.7
5,264,603	-		GFF5274	0.39	-2.1
5,264,603	-		GFF5274	0.39	+1.7
5,264,603	-		GFF5274	0.39	-1.5
5,264,605	+		GFF5274	0.39	+0.2
5,264,605	+		GFF5274	0.39	-1.1
5,264,605	+		GFF5274	0.39	-0.4
5,264,605	+		GFF5274	0.39	-0.5
5,264,613	-		GFF5274	0.40	+0.6
5,264,613	-		GFF5274	0.40	+0.0
5,264,613	-		GFF5274	0.40	-1.4
5,264,613	-		GFF5274	0.40	+1.5
5,264,617	+		GFF5274	0.40	-1.0
5,264,617	+		GFF5274	0.40	+0.4
5,264,623	-		GFF5274	0.40	+0.5
5,264,623	-		GFF5274	0.40	+1.1
5,264,625	-		GFF5274	0.40	-0.3
5,264,634	+		GFF5274	0.40	-0.2
5,264,663	-		GFF5274	0.41	-1.5
5,264,669	+		GFF5274	0.41	-1.1
5,264,697	+		GFF5274	0.42	+1.4
5,264,741	+		GFF5274	0.44	+0.7
5,264,781	+		GFF5274	0.45	-1.2
5,264,791	-		GFF5274	0.45	-2.2
5,264,792	+		GFF5274	0.45	+0.3
5,264,792	+		GFF5274	0.45	+0.3
5,264,792	+		GFF5274	0.45	-1.6
5,264,792	+		GFF5274	0.45	-0.5
5,264,800	-		GFF5274	0.46	-0.7
5,264,800	-		GFF5274	0.46	+1.0
5,264,802	+		GFF5274	0.46	+0.3
5,264,802	+		GFF5274	0.46	-1.1
5,264,810	-		GFF5274	0.46	-2.1
5,264,810	-		GFF5274	0.46	-1.6
5,264,810	-		GFF5274	0.46	-0.2
5,264,810	-		GFF5274	0.46	-1.1
5,264,810	-		GFF5274	0.46	+0.4
5,264,810	-		GFF5274	0.46	+1.0
5,264,810	-		GFF5274	0.46	-1.3
5,264,810	-		GFF5274	0.46	-0.1
5,264,810	-		GFF5274	0.46	+1.0
5,264,810	-		GFF5274	0.46	+1.1
5,264,825	-		GFF5274	0.46	+0.4
5,264,830	-		GFF5274	0.46	-1.8
5,265,038	-		GFF5274	0.53	-0.7
5,265,043	+		GFF5274	0.53	+0.7
5,265,051	-		GFF5274	0.53	+0.0
5,265,097	-		GFF5274	0.55	+1.2
5,265,122	+		GFF5274	0.55	-2.1
5,265,282	-		GFF5274	0.60	-0.6
5,265,300	+		GFF5274	0.61	+0.7
5,265,300	+		GFF5274	0.61	-0.9
5,265,300	-		GFF5274	0.61	+1.0
5,265,303	-		GFF5274	0.61	+0.5
5,265,303	-		GFF5274	0.61	-2.6
5,265,308	-		GFF5274	0.61	+0.9
5,265,308	-		GFF5274	0.61	-0.5
5,265,321	+		GFF5274	0.62	+0.3
5,265,322	+		GFF5274	0.62	-0.1
5,265,330	-		GFF5274	0.62	-2.5
5,265,336	+		GFF5274	0.62	+1.2
5,265,344	-		GFF5274	0.62	+0.6
5,265,344	-		GFF5274	0.62	-0.1
5,265,391	-		GFF5274	0.64	-0.1
5,265,504	+		GFF5274	0.67	-1.1
5,265,509	+		GFF5274	0.67	-1.2
5,265,511	-		GFF5274	0.68	-0.1
5,265,512	-		GFF5274	0.68	-1.3
5,265,512	-		GFF5274	0.68	+0.9
5,265,512	-		GFF5274	0.68	+0.7
5,265,512	-		GFF5274	0.68	-2.3
5,265,512	-		GFF5274	0.68	-2.0
5,265,520	+		GFF5274	0.68	+0.4
5,265,520	+		GFF5274	0.68	+2.0
5,265,528	-		GFF5274	0.68	+1.0
5,265,528	-		GFF5274	0.68	+1.6
5,265,579	-		GFF5274	0.70	-0.7
5,265,600	-		GFF5274	0.70	-1.0
5,265,618	+		GFF5274	0.71	-0.1
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