Strain Fitness in Sphingobium sp. HT1-2 around GFF5273

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,260,632	+		GFF5272	0.12	+0.3
5,260,632	+		GFF5272	0.12	+0.0
5,260,655	+		GFF5272	0.14	+1.6
5,260,663	-		GFF5272	0.15	+0.0
5,260,666	-		GFF5272	0.15	+1.0
5,260,673	-		GFF5272	0.16	+0.2
5,260,683	-		GFF5272	0.16	-0.8
5,260,685	-		GFF5272	0.17	+0.8
5,260,693	+		GFF5272	0.17	+0.6
5,260,696	-		GFF5272	0.18	+1.0
5,260,701	-		GFF5272	0.18	+0.7
5,260,716	-		GFF5272	0.19	+0.8
5,260,748	-		GFF5272	0.22	+0.7
5,260,759	-		GFF5272	0.23	-1.1
5,260,760	-		GFF5272	0.23	+0.0
5,260,761	-		GFF5272	0.23	-1.7
5,260,768	+		GFF5272	0.24	-0.2
5,260,776	-		GFF5272	0.25	+1.1
5,260,816	-		GFF5272	0.28	+0.0
5,260,845	-		GFF5272	0.31	+1.0
5,260,858	-		GFF5272	0.32	-0.5
5,260,887	+		GFF5272	0.35	-0.4
5,260,887	+		GFF5272	0.35	+0.2
5,260,903	-		GFF5272	0.36	-0.9
5,260,903	-		GFF5272	0.36	+1.0
5,260,940	+		GFF5272	0.39	-0.8
5,260,947	-		GFF5272	0.40	-0.4
5,260,949	+		GFF5272	0.40	-1.7
5,260,949	+		GFF5272	0.40	-0.1
5,260,949	+		GFF5272	0.40	+1.1
5,260,954	+		GFF5272	0.41	-1.7
5,260,954	+		GFF5272	0.41	+0.9
5,260,954	+		GFF5272	0.41	+0.7
5,260,954	+		GFF5272	0.41	-0.3
5,260,957	-		GFF5272	0.41	-1.1
5,260,957	-		GFF5272	0.41	-2.1
5,260,957	-		GFF5272	0.41	-1.4
5,260,957	-		GFF5272	0.41	-0.3
5,260,962	-		GFF5272	0.41	-0.2
5,260,962	-		GFF5272	0.41	+0.3
5,260,997	-		GFF5272	0.45	-0.7
5,261,003	-		GFF5272	0.45	-1.5
5,261,003	-		GFF5272	0.45	+0.8
5,261,035	-		GFF5272	0.48	+0.7
5,261,080	+		GFF5272	0.52	-2.2
5,261,080	+		GFF5272	0.52	+0.9
5,261,088	-		GFF5272	0.53	+0.4
5,261,088	-		GFF5272	0.53	+0.6
5,261,090	-		GFF5272	0.53	-1.6
5,261,092	-		GFF5272	0.53	-2.1
5,261,099	+		GFF5272	0.54	-1.0
5,261,106	+		GFF5272	0.54	+0.2
5,261,148	+		GFF5272	0.58	+0.5
5,261,154	-		GFF5272	0.59	-2.0
5,261,156	-		GFF5272	0.59	-0.3
5,261,159	+		GFF5272	0.59	+0.9
5,261,206	+		GFF5272	0.63	+0.6
5,261,214	+		GFF5272	0.64	-2.4
5,261,216	+		GFF5272	0.64	-1.3
5,261,216	+		GFF5272	0.64	-0.6
5,261,224	-		GFF5272	0.65	-0.6
5,261,224	-		GFF5272	0.65	-0.1
5,261,229	+		GFF5272	0.65	+0.8
5,261,229	+		GFF5272	0.65	+0.7
5,261,229	+		GFF5272	0.65	-0.1
5,261,229	+		GFF5272	0.65	-0.1
5,261,229	+		GFF5272	0.65	-2.8
5,261,229	+		GFF5272	0.65	+0.5
5,261,237	-		GFF5272	0.66	+0.7
5,261,237	-		GFF5272	0.66	+0.4
5,261,267	-		GFF5272	0.69	+1.0
5,261,318	+		GFF5272	0.73	-1.1
5,261,326	+		GFF5272	0.74	+0.4
5,261,328	+		GFF5272	0.74	-1.7
5,261,329	+		GFF5272	0.74	-0.8
5,261,329	+		GFF5272	0.74	+0.0
5,261,329	+		GFF5272	0.74	+1.0
5,261,329	+		GFF5272	0.74	+0.1
5,261,329	+		GFF5272	0.74	+0.3
5,261,329	+		GFF5272	0.74	+0.7
5,261,329	+		GFF5272	0.74	+0.1
5,261,329	+		GFF5272	0.74	+0.4
5,261,329	+		GFF5272	0.74	+0.2
5,261,329	+		GFF5272	0.74	+0.3
5,261,337	-		GFF5272	0.75	+1.3
5,261,337	-		GFF5272	0.75	-0.0
5,261,337	-		GFF5272	0.75	+0.2
5,261,337	-		GFF5272	0.75	-0.2
5,261,337	-		GFF5272	0.75	-1.5
5,261,337	-		GFF5272	0.75	-0.9
5,261,337	-		GFF5272	0.75	+0.1
5,261,337	-		GFF5272	0.75	+0.5
5,261,337	-		GFF5272	0.75	-0.5
5,261,337	-		GFF5272	0.75	+0.1
5,261,337	-		GFF5272	0.75	-0.6
5,261,337	-		GFF5272	0.75	+1.6
5,261,348	-		GFF5272	0.76	-1.6
5,261,375	+		GFF5272	0.78	-0.7
5,261,375	+		GFF5272	0.78	-0.2
5,261,395	+		GFF5272	0.80	+0.2
5,261,403	-		GFF5272	0.81	+0.9
5,261,477	-		GFF5272	0.88	-0.5
5,261,484	+		GFF5272	0.88	+0.1
5,261,484	+		GFF5272	0.88	-1.6
5,261,484	+		GFF5272	0.88	-1.9
5,261,484	+		GFF5272	0.88	+0.0
5,261,484	+		GFF5272	0.88	+0.7
5,261,489	+		GFF5272	0.89	-0.0
5,261,492	-		GFF5272	0.89	-0.8
5,261,492	-		GFF5272	0.89	+0.8
5,261,492	-		GFF5272	0.89	-1.0
5,261,492	-		GFF5272	0.89	-0.5
5,261,556	+				+0.8
5,261,573	+				-2.3
5,261,573	+				-1.4
5,261,573	+				+0.3
5,261,573	+				-1.7
5,261,578	+				-1.1
5,261,581	-				+0.0
5,261,581	-				-1.4
5,261,610	-				+0.7
5,261,630	-				-1.6
5,261,635	+				-1.2
5,261,638	+				-1.8
5,261,643	-				-0.3
5,261,643	-				+0.4
5,261,666	-				+0.0
5,261,744	+				+0.3
5,261,744	+				+0.9
5,261,744	+				-1.1
5,261,752	-				-0.0
5,261,752	-				-0.1
5,261,834	-		GFF5273	0.13	+0.3
5,261,850	+		GFF5273	0.14	-1.1
5,261,855	+		GFF5273	0.14	+0.2
5,261,858	-		GFF5273	0.14	-1.0
5,261,858	-		GFF5273	0.14	+0.4
5,261,863	-		GFF5273	0.14	-0.3
5,261,865	+		GFF5273	0.14	+0.8
5,261,865	-		GFF5273	0.14	+0.6
5,261,877	-		GFF5273	0.15	+0.1
5,261,879	-		GFF5273	0.15	-0.4
5,261,914	+		GFF5273	0.17	+1.4
5,261,915	+		GFF5273	0.18	+1.1
5,261,915	+		GFF5273	0.18	-1.2
5,261,915	+		GFF5273	0.18	-1.1
5,261,915	+		GFF5273	0.18	+0.1
5,261,915	+		GFF5273	0.18	-1.1
5,261,932	+		GFF5273	0.19	+1.9
5,261,938	+		GFF5273	0.19	+0.9
5,261,940	-		GFF5273	0.19	+0.6
5,261,970	+		GFF5273	0.21	+0.3
5,261,970	+		GFF5273	0.21	-0.1
5,261,970	+		GFF5273	0.21	-1.7
5,261,978	-		GFF5273	0.21	+1.6
5,261,978	-		GFF5273	0.21	+0.4
5,261,978	-		GFF5273	0.21	+1.2
5,261,978	-		GFF5273	0.21	+0.4
5,261,978	-		GFF5273	0.21	+0.7
5,261,988	+		GFF5273	0.22	+0.4
5,261,988	+		GFF5273	0.22	+0.7
5,261,991	-		GFF5273	0.22	+0.4
5,261,993	+		GFF5273	0.22	-1.2
5,261,996	-		GFF5273	0.22	+0.2
5,261,998	+		GFF5273	0.23	-0.6
5,261,998	+		GFF5273	0.23	+0.2
5,261,998	+		GFF5273	0.23	-2.1
5,261,998	+		GFF5273	0.23	-0.2
5,262,006	-		GFF5273	0.23	-0.1
5,262,006	-		GFF5273	0.23	+0.2
5,262,006	-		GFF5273	0.23	+0.9
5,262,011	-		GFF5273	0.23	+0.5
5,262,011	-		GFF5273	0.23	-0.6
5,262,026	+		GFF5273	0.24	-1.5
5,262,036	+		GFF5273	0.25	+0.2
5,262,039	-		GFF5273	0.25	+1.0
5,262,058	+		GFF5273	0.26	-0.3
5,262,078	-		GFF5273	0.28	+0.3
5,262,089	+		GFF5273	0.28	+1.1
5,262,098	+		GFF5273	0.29	+1.1
5,262,099	+		GFF5273	0.29	+0.5
5,262,106	-		GFF5273	0.29	-0.4
5,262,111	+		GFF5273	0.30	+1.3
5,262,124	-		GFF5273	0.30	-0.7
5,262,150	+		GFF5273	0.32	+0.3
5,262,158	-		GFF5273	0.32	-1.0
5,262,158	-		GFF5273	0.32	-2.3
5,262,180	+		GFF5273	0.34	-1.1
5,262,180	-		GFF5273	0.34	+0.9
5,262,240	-		GFF5273	0.37	+1.1
5,262,240	-		GFF5273	0.37	-0.4
5,262,242	+		GFF5273	0.38	+0.4
5,262,250	-		GFF5273	0.38	-0.1
5,262,255	-		GFF5273	0.38	-1.4
5,262,263	+		GFF5273	0.39	+0.2
5,262,267	+		GFF5273	0.39	+0.9
5,262,281	+		GFF5273	0.40	-1.1
5,262,293	-		GFF5273	0.41	+0.7
5,262,337	+		GFF5273	0.43	-1.0
5,262,340	-		GFF5273	0.44	+0.6
5,262,358	+		GFF5273	0.45	-0.5
5,262,359	-		GFF5273	0.45	-0.3
5,262,361	-		GFF5273	0.45	-1.0
5,262,375	-		GFF5273	0.46	-1.2
5,262,377	+		GFF5273	0.46	+0.9
5,262,377	+		GFF5273	0.46	+0.4
5,262,377	+		GFF5273	0.46	-0.6
5,262,377	+		GFF5273	0.46	+0.0
5,262,406	+		GFF5273	0.48	+0.9
5,262,414	-		GFF5273	0.48	-0.3
5,262,449	+		GFF5273	0.50	+0.4
5,262,449	+		GFF5273	0.50	-0.3
5,262,449	+		GFF5273	0.50	+0.4
5,262,457	-		GFF5273	0.51	-1.1
5,262,459	+		GFF5273	0.51	-1.0
5,262,479	+		GFF5273	0.52	+0.0
5,262,495	-		GFF5273	0.53	-0.7
5,262,503	+		GFF5273	0.54	-1.0
5,262,516	+		GFF5273	0.54	-1.7
5,262,519	-		GFF5273	0.55	-0.7
5,262,535	-		GFF5273	0.56	-0.2
5,262,556	+		GFF5273	0.57	-0.7
5,262,564	+		GFF5273	0.57	-0.2
5,262,572	-		GFF5273	0.58	-0.6
5,262,586	+		GFF5273	0.59	-2.1
5,262,589	-		GFF5273	0.59	+0.1
5,262,600	+		GFF5273	0.59	-1.6
5,262,600	+		GFF5273	0.59	+0.9
5,262,608	-		GFF5273	0.60	+0.1
5,262,609	-		GFF5273	0.60	-0.1
5,262,613	-		GFF5273	0.60	-0.4
5,262,613	-		GFF5273	0.60	-0.1
5,262,613	-		GFF5273	0.60	-1.0
5,262,623	+		GFF5273	0.61	+0.6
5,262,626	-		GFF5273	0.61	-2.1
5,262,626	-		GFF5273	0.61	-1.1
5,262,626	-		GFF5273	0.61	+0.3
5,262,628	+		GFF5273	0.61	-0.1
5,262,691	+		GFF5273	0.65	-0.6
5,262,691	+		GFF5273	0.65	-0.1
5,262,694	-		GFF5273	0.65	+0.9
5,262,696	+		GFF5273	0.65	+0.2
5,262,696	+		GFF5273	0.65	+0.2
5,262,696	+		GFF5273	0.65	-0.5
5,262,696	+		GFF5273	0.65	+0.0
5,262,699	-		GFF5273	0.66	-1.1
5,262,699	-		GFF5273	0.66	+0.7
5,262,699	-		GFF5273	0.66	+0.4
5,262,756	+		GFF5273	0.69	-0.2
5,262,756	+		GFF5273	0.69	-0.4
5,262,756	+		GFF5273	0.69	+0.7
5,262,764	-		GFF5273	0.70	-0.6
5,262,774	+		GFF5273	0.70	-0.2
5,262,783	+		GFF5273	0.71	-0.1
5,262,783	+		GFF5273	0.71	+0.4
5,262,791	-		GFF5273	0.71	-1.8
5,262,804	-		GFF5273	0.72	+1.0
5,262,813	+		GFF5273	0.73	-2.3
5,262,816	-		GFF5273	0.73	-1.8
5,262,831	+		GFF5273	0.74	-1.7
5,262,831	-		GFF5273	0.74	-0.6
5,262,837	+		GFF5273	0.74	-0.8
5,262,845	-		GFF5273	0.75	-0.3
5,262,845	-		GFF5273	0.75	-0.5
5,262,852	-		GFF5273	0.75	-0.5
5,262,859	+		GFF5273	0.75	-0.2
5,262,867	+		GFF5273	0.76	+0.4
5,262,877	-		GFF5273	0.76	+0.3
5,262,899	-		GFF5273	0.78	-0.6
5,262,915	+		GFF5273	0.79	-0.0
5,262,939	+		GFF5273	0.80	-0.3
5,262,939	+		GFF5273	0.80	+0.3
5,262,939	+		GFF5273	0.80	-1.6
5,262,939	+		GFF5273	0.80	+1.2
5,262,939	+		GFF5273	0.80	+0.2
5,262,947	-		GFF5273	0.81	+0.7
5,262,947	-		GFF5273	0.81	-2.1
5,262,968	+		GFF5273	0.82	-0.0
5,262,976	-		GFF5273	0.83	-0.3
5,262,976	-		GFF5273	0.83	-1.8
5,262,980	-		GFF5273	0.83	+0.0
5,262,981	+		GFF5273	0.83	-0.6
5,262,996	+		GFF5273	0.84	+0.4
5,263,079	+		GFF5273	0.89	-1.3
5,263,083	-		GFF5273	0.89	-1.1
5,263,091	+		GFF5273	0.90	-1.1
5,263,091	+		GFF5273	0.90	-1.7
5,263,099	-				-0.6
5,263,099	-				-1.7
5,263,099	-				-1.0
5,263,115	-				+1.2
5,263,120	-				-2.1
5,263,127	-				+0.2
5,263,134	+				+0.5
5,263,134	+				+0.3
5,263,140	+				+1.0
5,263,140	+				-0.4
5,263,148	-				-0.0
5,263,148	-				+0.9
5,263,159	+				+1.4
5,263,159	+				-0.1
5,263,164	+				+1.6
5,263,164	+				-0.3
5,263,164	+				+0.2
5,263,167	-				-0.1
5,263,167	-				+0.2
5,263,184	-				+0.4
5,263,198	-				-0.5
5,263,198	-				+0.3
5,263,210	+				+0.9
5,263,210	+				+0.9
5,263,210	+				-1.7
5,263,218	-				+0.3
5,263,218	-				-0.0
5,263,227	+				+0.4
5,263,227	+				-0.4
5,263,227	+				+0.4
5,263,227	+				-0.8
5,263,227	+				-0.2
5,263,228	-				+0.7
5,263,228	-				-2.0
5,263,230	-				+0.1
5,263,230	-				+1.0
5,263,261	+				+1.3
5,263,285	+				-1.5
5,263,288	-				-0.5
5,263,300	+				+0.4
5,263,300	+				-1.3
5,263,300	+				+0.6
5,263,300	+				+2.2
5,263,300	+				+1.3
5,263,300	+				+0.9
5,263,300	+				+0.1
5,263,300	+				+1.0
5,263,300	+				-0.3
5,263,300	+				+0.5
5,263,300	+				-1.0
5,263,300	+				+0.8
5,263,300	+				+0.6
5,263,300	+				+1.1
5,263,300	+				-0.2
5,263,300	+				-0.1
5,263,300	+				-0.4
5,263,300	+				+0.3
5,263,300	+				-0.4
5,263,300	+				+1.2
5,263,308	-				-0.3
5,263,308	-				-0.1
5,263,308	-				-0.8
5,263,308	-				-0.5
5,263,308	-				-0.1
5,263,308	-				+0.1
5,263,308	-				+0.6
5,263,308	-				-0.3
5,263,308	-				-0.1
5,263,308	-				+0.3
5,263,308	-				-0.3
5,263,308	-				-0.1
5,263,308	-				+0.6
5,263,315	+				+0.2
5,263,379	+				+1.0
5,263,394	+				+0.7
5,263,402	-				-0.7
5,263,402	-				+0.2
5,263,425	+				-0.8
5,263,427	+				-1.0
5,263,454	-				-0.6
5,263,482	-				-0.5
5,263,504	+				-0.6
5,263,549	-				-0.2
5,263,551	+				-1.7
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