Strain Fitness in Sphingobium sp. HT1-2 around GFF5151

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,143,242	-				-0.2
5,143,242	-				-2.1
5,143,247	+				-1.2
5,143,268	-				-3.3
5,143,293	+				-2.7
5,143,295	-				-1.7
5,143,295	-				-1.3
5,143,301	-				+0.3
5,143,315	-				-1.5
5,143,334	-		GFF5150	0.12	-0.9
5,143,344	-		GFF5150	0.13	-0.0
5,143,397	-		GFF5150	0.19	+0.1
5,143,415	+		GFF5150	0.21	-3.1
5,143,423	-		GFF5150	0.22	-1.3
5,143,429	-		GFF5150	0.23	-2.0
5,143,484	+		GFF5150	0.30	+0.3
5,143,485	+		GFF5150	0.30	-0.4
5,143,485	+		GFF5150	0.30	+0.8
5,143,502	+		GFF5150	0.32	-3.0
5,143,534	-		GFF5150	0.35	-0.5
5,143,541	-		GFF5150	0.36	-1.1
5,143,541	-		GFF5150	0.36	-0.3
5,143,560	+		GFF5150	0.38	+0.3
5,143,560	+		GFF5150	0.38	-0.1
5,143,560	+		GFF5150	0.38	-0.0
5,143,562	+		GFF5150	0.39	-0.8
5,143,568	-		GFF5150	0.39	-0.7
5,143,568	-		GFF5150	0.39	-0.8
5,143,568	-		GFF5150	0.39	-0.7
5,143,568	-		GFF5150	0.39	-0.2
5,143,568	-		GFF5150	0.39	-0.6
5,143,568	-		GFF5150	0.39	-1.7
5,143,568	-		GFF5150	0.39	-1.6
5,143,624	+		GFF5150	0.46	-1.1
5,143,632	-		GFF5150	0.47	-1.7
5,143,641	+		GFF5150	0.48	-2.1
5,143,696	+		GFF5150	0.54	-0.0
5,143,696	+		GFF5150	0.54	-0.3
5,143,704	-		GFF5150	0.55	-0.4
5,143,704	-		GFF5150	0.55	+0.5
5,143,736	+		GFF5150	0.59	-0.3
5,143,742	+		GFF5150	0.60	+1.2
5,143,750	-		GFF5150	0.61	+0.6
5,143,750	-		GFF5150	0.61	-0.3
5,143,763	+		GFF5150	0.62	-1.0
5,143,766	-		GFF5150	0.63	-0.4
5,143,773	+		GFF5150	0.63	-0.8
5,143,781	-		GFF5150	0.64	-2.0
5,143,781	-		GFF5150	0.64	-0.8
5,143,781	-		GFF5150	0.64	+0.1
5,143,809	+		GFF5150	0.68	-0.5
5,143,822	+		GFF5150	0.69	-1.3
5,143,886	-		GFF5150	0.77	+0.6
5,143,896	-		GFF5150	0.78	-0.8
5,143,900	+		GFF5150	0.78	-0.4
5,143,908	-		GFF5150	0.79	-2.1
5,143,917	-		GFF5150	0.80	-2.5
5,143,930	-		GFF5150	0.82	+0.5
5,143,931	-		GFF5150	0.82	-3.1
5,143,968	+		GFF5150	0.86	-1.7
5,143,968	+		GFF5150	0.86	+0.1
5,143,968	+		GFF5150	0.86	-2.4
5,143,973	+		GFF5150	0.87	-0.3
5,143,976	-		GFF5150	0.87	-1.7
5,143,978	+		GFF5150	0.88	-1.1
5,143,978	+		GFF5150	0.88	-0.2
5,143,981	-		GFF5150	0.88	+0.0
5,143,986	-		GFF5150	0.88	-2.4
5,143,991	+		GFF5150	0.89	+0.6
5,143,997	+		GFF5150	0.90	-1.5
5,144,005	-				+0.8
5,144,014	-				-1.0
5,144,024	-				-0.4
5,144,028	+				-2.7
5,144,047	-				+0.7
5,144,068	-				-1.6
5,144,077	-				-0.7
5,144,077	-				-0.1
5,144,087	+				-0.7
5,144,087	+				-0.1
5,144,087	+				-1.1
5,144,089	-				+0.1
5,144,094	-				-2.7
5,144,095	-				-0.2
5,144,101	+				-2.1
5,144,102	+				-1.0
5,144,106	+				-2.1
5,144,110	-				-0.7
5,144,111	+				-0.2
5,144,114	+				+1.9
5,144,132	-				-0.4
5,144,136	+				-0.7
5,144,137	+				-0.4
5,144,137	-				+0.3
5,144,140	+				+0.1
5,144,142	+				+0.7
5,144,145	+				-0.3
5,144,145	-				-0.8
5,144,145	-				-1.3
5,144,147	+				-1.6
5,144,147	+				-0.3
5,144,147	+				-1.3
5,144,147	+				-0.8
5,144,147	+				-1.0
5,144,148	-				-1.3
5,144,148	-				-0.7
5,144,150	-				-0.0
5,144,155	-				+0.0
5,144,155	-				+0.5
5,144,187	-				-1.3
5,144,210	+				-0.3
5,144,210	+				+1.0
5,144,233	+				-0.3
5,144,247	+				-0.3
5,144,279	+				-0.8
5,144,281	+				-0.0
5,144,281	+				+0.9
5,144,281	+				-0.5
5,144,281	+				-1.2
5,144,281	+				+0.2
5,144,281	+				+0.1
5,144,281	+				+0.3
5,144,281	+				-1.9
5,144,281	+				-1.9
5,144,289	-				+1.0
5,144,289	-				+0.1
5,144,289	-				-0.8
5,144,289	-				-1.0
5,144,289	-				-0.1
5,144,289	-				-2.0
5,144,289	-				+0.3
5,144,303	+		GFF5151	0.11	-0.2
5,144,303	+		GFF5151	0.11	-0.5
5,144,311	-		GFF5151	0.13	-0.0
5,144,311	-		GFF5151	0.13	-0.8
5,144,342	-		GFF5151	0.17	-0.5
5,144,342	-		GFF5151	0.17	-1.1
5,144,350	+		GFF5151	0.18	-1.7
5,144,391	-		GFF5151	0.25	-3.4
5,144,460	+		GFF5151	0.35	-0.0
5,144,567	-		GFF5151	0.51	-2.2
5,144,676	+		GFF5151	0.68	-0.3
5,144,693	+		GFF5151	0.70	+1.3
5,144,693	+		GFF5151	0.70	-0.9
5,144,713	+		GFF5151	0.73	-1.8
5,144,713	+		GFF5151	0.73	-2.0
5,144,713	+		GFF5151	0.73	-1.3
5,144,713	+		GFF5151	0.73	-2.6
5,144,713	+		GFF5151	0.73	-2.7
5,144,713	+		GFF5151	0.73	+0.0
5,144,719	+		GFF5151	0.74	+0.6
5,144,721	-		GFF5151	0.74	-1.6
5,144,721	-		GFF5151	0.74	-1.8
5,144,721	-		GFF5151	0.74	-1.7
5,144,726	+		GFF5151	0.75	-1.6
5,144,737	+		GFF5151	0.77	-0.8
5,144,737	+		GFF5151	0.77	-1.2
5,144,785	+		GFF5151	0.84	-1.3
5,144,785	+		GFF5151	0.84	-0.3
5,144,785	+		GFF5151	0.84	-0.9
5,144,785	+		GFF5151	0.84	-0.8
5,144,814	+		GFF5151	0.88	-0.9
5,144,814	+		GFF5151	0.88	-1.9
5,144,836	+				-0.6
5,144,836	+				-0.1
5,144,836	+				-0.5
5,144,842	-				-0.7
5,144,842	-				+0.1
5,144,844	-				-0.0
5,144,844	-				-1.5
5,144,847	+				-1.6
5,144,847	+				-0.3
5,144,855	-				-0.1
5,144,862	+				-0.6
5,144,863	-				-0.7
5,144,872	+				+0.5
5,144,891	+				-0.9
5,144,901	+				+0.9
5,144,901	+				+0.1
5,144,902	+				-1.5
5,144,909	-				+0.0
5,144,909	-				-0.7
5,144,910	-				-0.7
5,144,925	-				+1.1
5,144,925	-				+0.8
5,144,934	+				-0.0
5,144,998	+				+0.1
5,144,999	+				+0.6
5,144,999	+				-0.7
5,144,999	+				-0.4
5,145,002	+				-2.4
5,145,004	+				-0.2
5,145,004	+				-2.0
5,145,004	+				-0.0
5,145,004	+				-2.9
5,145,004	+				+1.0
5,145,004	+				-0.5
5,145,004	+				-0.3
5,145,007	-				-1.2
5,145,009	+				-0.4
5,145,012	-				-0.9
5,145,012	-				-1.4
5,145,014	+				+0.5
5,145,017	-				-0.7
5,145,022	-		GFF5152	0.11	-0.8
5,145,023	-		GFF5152	0.11	+1.1
5,145,031	+		GFF5152	0.13	+0.1
5,145,031	+		GFF5152	0.13	-1.1
5,145,031	+		GFF5152	0.13	-1.0
5,145,039	-		GFF5152	0.15	-0.3
5,145,039	-		GFF5152	0.15	-0.0
5,145,039	-		GFF5152	0.15	-0.3
5,145,039	-		GFF5152	0.15	-0.2
5,145,041	+		GFF5152	0.16	-0.8
5,145,041	+		GFF5152	0.16	-0.6
5,145,048	-		GFF5152	0.18	-0.3
5,145,059	+		GFF5152	0.21	-1.8
5,145,063	+		GFF5152	0.22	-0.2
5,145,063	+		GFF5152	0.22	-0.4
5,145,067	-		GFF5152	0.23	+0.6
5,145,071	-		GFF5152	0.24	-2.2
5,145,091	+		GFF5152	0.29	-0.7
5,145,091	+		GFF5152	0.29	-0.8
5,145,099	+		GFF5152	0.31	-1.7
5,145,099	-		GFF5152	0.31	-0.8
5,145,101	+		GFF5152	0.32	-1.9
5,145,101	+		GFF5152	0.32	+1.0
5,145,101	+		GFF5152	0.32	-0.6
5,145,101	+		GFF5152	0.32	+0.2
5,145,101	+		GFF5152	0.32	+0.1
5,145,101	+		GFF5152	0.32	-0.8
5,145,109	-		GFF5152	0.34	-1.2
5,145,109	-		GFF5152	0.34	-0.4
5,145,109	-		GFF5152	0.34	+0.8
5,145,109	-		GFF5152	0.34	-0.8
5,145,109	-		GFF5152	0.34	-0.2
5,145,156	+		GFF5152	0.47	+0.1
5,145,167	+		GFF5152	0.50	-1.0
5,145,173	+		GFF5152	0.51	+0.9
5,145,199	-		GFF5152	0.58	-0.5
5,145,205	-		GFF5152	0.60	+0.1
5,145,212	+		GFF5152	0.62	+0.1
5,145,220	-		GFF5152	0.64	-1.1
5,145,244	+		GFF5152	0.70	-0.8
5,145,244	+		GFF5152	0.70	-1.4
5,145,244	+		GFF5152	0.70	+0.5
5,145,244	+		GFF5152	0.70	-0.0
5,145,244	+		GFF5152	0.70	-1.0
5,145,244	+		GFF5152	0.70	-0.4
5,145,244	+		GFF5152	0.70	-0.9
5,145,244	+		GFF5152	0.70	-1.7
5,145,244	+		GFF5152	0.70	-0.7
5,145,244	+		GFF5152	0.70	+0.7
5,145,244	+		GFF5152	0.70	-1.7
5,145,244	+		GFF5152	0.70	+0.6
5,145,244	+		GFF5152	0.70	-1.7
5,145,244	+		GFF5152	0.70	-1.0
5,145,244	+		GFF5152	0.70	-0.2
5,145,244	+		GFF5152	0.70	+0.2
5,145,244	+		GFF5152	0.70	-0.7
5,145,252	-		GFF5152	0.73	-0.2
5,145,252	-		GFF5152	0.73	-0.3
5,145,252	-		GFF5152	0.73	-0.2
5,145,252	-		GFF5152	0.73	-1.1
5,145,252	-		GFF5152	0.73	-1.4
5,145,252	-		GFF5152	0.73	+0.4
5,145,252	-		GFF5152	0.73	-0.3
5,145,252	-		GFF5152	0.73	-1.2
5,145,252	-		GFF5152	0.73	+0.7
5,145,252	-		GFF5152	0.73	-1.9
5,145,252	-		GFF5152	0.73	-0.4
5,145,254	+		GFF5152	0.73	-1.6
5,145,257	-		GFF5152	0.74	-2.8
5,145,268	+		GFF5152	0.77	-1.3
5,145,282	+		GFF5152	0.81	-1.3
5,145,308	-		GFF5152	0.88	-0.4
5,145,321	+				-2.1
5,145,325	+				+0.2
5,145,332	+				+0.6
5,145,344	+				-1.9
5,145,352	-				-1.1
5,145,352	-				-0.6
5,145,369	-				+0.3
5,145,371	+				-0.9
5,145,371	-				-1.5
5,145,379	-				-0.6
5,145,379	-				+0.1
5,145,379	-				-0.8
5,145,402	-				-0.9
5,145,403	+				-1.5
5,145,408	+				-0.4
5,145,421	+				-0.9
5,145,421	+				-1.8
5,145,426	+				-0.5
5,145,426	+				-0.1
5,145,426	+				-1.5
5,145,440	+				-0.6
5,145,442	+				-0.5
5,145,447	+				-0.8
5,145,448	-				-0.6
5,145,448	-				-1.0
5,145,468	+				+0.1
5,145,470	-				-0.7
5,145,470	-				+0.1
5,145,472	+				-1.1
5,145,488	+				-0.9
5,145,603	-		GFF5153	0.26	-2.0
5,145,620	-		GFF5153	0.29	-0.8