Strain Fitness in Sphingobium sp. HT1-2 around GFF5059

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,054,868	+		GFF5057	0.27	+0.6
5,054,871	-		GFF5057	0.27	-0.2
5,054,883	+		GFF5057	0.29	-0.8
5,054,883	+		GFF5057	0.29	+0.1
5,054,883	-		GFF5057	0.29	-0.5
5,054,888	-		GFF5057	0.29	+1.3
5,054,891	-		GFF5057	0.30	+1.1
5,054,891	-		GFF5057	0.30	-2.0
5,054,895	+		GFF5057	0.30	-0.2
5,054,898	-		GFF5057	0.30	-1.2
5,054,906	+		GFF5057	0.31	-0.1
5,054,906	+		GFF5057	0.31	-0.3
5,054,911	-		GFF5057	0.32	+0.3
5,054,914	-		GFF5057	0.32	+1.0
5,054,914	-		GFF5057	0.32	-0.0
5,054,915	-		GFF5057	0.32	-0.3
5,054,916	-		GFF5057	0.33	+1.1
5,054,926	+		GFF5057	0.34	-2.1
5,054,926	+		GFF5057	0.34	-0.1
5,054,934	-		GFF5057	0.35	+0.6
5,054,934	-		GFF5057	0.35	-1.9
5,054,956	+		GFF5057	0.37	+1.2
5,054,956	+		GFF5057	0.37	-2.1
5,054,976	+		GFF5057	0.40	-0.7
5,054,976	+		GFF5057	0.40	+0.3
5,054,981	+		GFF5057	0.40	-1.9
5,055,025	-		GFF5057	0.45	+0.5
5,055,039	+		GFF5057	0.47	+1.0
5,055,040	-		GFF5057	0.47	+1.1
5,055,040	-		GFF5057	0.47	-0.2
5,055,047	+		GFF5057	0.48	-0.7
5,055,047	+		GFF5057	0.48	+0.7
5,055,055	-		GFF5057	0.49	-0.1
5,055,077	-		GFF5057	0.52	-0.2
5,055,087	-		GFF5057	0.53	+0.3
5,055,087	-		GFF5057	0.53	-0.0
5,055,087	-		GFF5057	0.53	+0.6
5,055,087	-		GFF5057	0.53	+0.2
5,055,099	-		GFF5057	0.54	-0.7
5,055,106	+		GFF5057	0.55	-0.4
5,055,108	+		GFF5057	0.55	+0.1
5,055,125	+		GFF5057	0.57	-1.0
5,055,125	-		GFF5057	0.57	+0.7
5,055,131	-		GFF5057	0.58	+0.3
5,055,135	-		GFF5057	0.59	+0.4
5,055,146	-		GFF5057	0.60	+0.3
5,055,149	+		GFF5057	0.60	+0.4
5,055,155	+		GFF5057	0.61	-1.5
5,055,164	-		GFF5057	0.62	-1.4
5,055,169	-		GFF5057	0.63	+0.5
5,055,174	-		GFF5057	0.63	-0.7
5,055,181	-		GFF5057	0.64	+0.8
5,055,184	-		GFF5057	0.64	+0.2
5,055,186	+		GFF5057	0.65	+0.1
5,055,194	-		GFF5057	0.66	+0.1
5,055,194	-		GFF5057	0.66	+2.0
5,055,233	+		GFF5057	0.70	+1.0
5,055,235	+		GFF5057	0.70	+0.9
5,055,235	+		GFF5057	0.70	-2.1
5,055,240	+		GFF5057	0.71	-0.7
5,055,240	+		GFF5057	0.71	+0.5
5,055,240	+		GFF5057	0.71	+1.2
5,055,240	+		GFF5057	0.71	+0.7
5,055,243	-		GFF5057	0.71	+0.5
5,055,248	-		GFF5057	0.72	+1.0
5,055,248	-		GFF5057	0.72	+0.4
5,055,248	-		GFF5057	0.72	+1.2
5,055,248	-		GFF5057	0.72	+0.6
5,055,249	-		GFF5057	0.72	+0.9
5,055,259	-		GFF5057	0.73	+0.7
5,055,280	-		GFF5057	0.76	-0.0
5,055,285	+		GFF5057	0.76	+0.5
5,055,286	+		GFF5057	0.77	+0.3
5,055,297	+		GFF5057	0.78	+0.2
5,055,300	-		GFF5057	0.78	+0.3
5,055,305	-		GFF5057	0.79	-1.0
5,055,309	+		GFF5057	0.79	+0.8
5,055,309	+		GFF5057	0.79	+1.0
5,055,317	-		GFF5057	0.80	-2.0
5,055,332	+		GFF5057	0.82	-0.2
5,055,359	+		GFF5057	0.85	-1.2
5,055,374	+		GFF5057	0.87	+0.4
5,055,374	+		GFF5057	0.87	-0.6
5,055,374	+		GFF5057	0.87	-0.3
5,055,377	-		GFF5057	0.87	+0.3
5,055,386	+		GFF5057	0.88	-1.2
5,055,386	+		GFF5057	0.88	+1.9
5,055,392	+		GFF5057	0.89	+0.8
5,055,394	+		GFF5057	0.89	-0.7
5,055,400	-				+0.2
5,055,407	+				+0.9
5,055,407	+				+0.5
5,055,407	-				+0.9
5,055,415	-				-0.7
5,055,419	-				+0.3
5,055,433	-				+0.7
5,055,466	+				-0.2
5,055,472	-				+0.5
5,055,472	-				-0.8
5,055,490	+				+0.4
5,055,554	+				-2.2
5,055,560	+				-2.3
5,055,560	+				+1.0
5,055,560	+				+1.0
5,055,560	+				-0.4
5,055,563	-				+0.7
5,055,565	+				-0.5
5,055,565	+				+0.4
5,055,568	-				+0.4
5,055,568	-				-1.2
5,055,573	-				+0.7
5,055,593	-				+0.1
5,055,595	-				+1.4
5,055,614	+				+1.2
5,055,623	-				-0.9
5,055,634	+				+0.7
5,055,635	+				-0.6
5,055,672	-				+0.9
5,055,697	-				-1.5
5,055,708	+				-0.1
5,055,726	+				-1.0
5,055,726	+				+0.8
5,055,726	+				+0.1
5,055,739	-				-1.1
5,055,739	-				+0.2
5,055,744	-				-0.3
5,055,762	+		GFF5058	0.16	+1.3
5,055,767	+		GFF5058	0.20	-0.9
5,055,767	+		GFF5058	0.20	-1.3
5,055,767	+		GFF5058	0.20	+0.3
5,055,767	+		GFF5058	0.20	+0.7
5,055,767	+		GFF5058	0.20	+1.0
5,055,775	-		GFF5058	0.27	-1.7
5,055,782	+		GFF5058	0.33	-0.2
5,055,800	+		GFF5058	0.47	+0.1
5,055,815	-		GFF5058	0.59	+1.1
5,055,818	+		GFF5058	0.62	-0.1
5,055,833	+		GFF5058	0.74	-0.0
5,055,833	+		GFF5058	0.74	+0.6
5,055,841	-		GFF5058	0.80	+0.3
5,055,855	+				-1.1
5,055,855	+				-0.8
5,055,855	+				-2.1
5,055,855	+				+0.5
5,055,855	+				+1.0
5,055,855	+				+0.1
5,055,855	+				-0.0
5,055,855	+				+0.8
5,055,855	+				+0.6
5,055,855	+				-0.9
5,055,855	+				-1.8
5,055,855	+				-0.6
5,055,855	+				+0.3
5,055,855	+				+0.7
5,055,855	+				+0.5
5,055,855	+				-1.7
5,055,855	+				+0.1
5,055,855	+				-1.5
5,055,855	+				-0.7
5,055,855	+				+0.3
5,055,855	+				-0.4
5,055,855	+				-0.9
5,055,855	+				-0.6
5,055,858	+				-0.0
5,055,860	+				+0.1
5,055,863	-				-1.8
5,055,863	-				-0.1
5,055,863	-				-1.9
5,055,863	-				+0.2
5,055,863	-				-0.1
5,055,863	-				-0.6
5,055,863	-				+1.4
5,055,863	-				+0.4
5,055,863	-				+0.6
5,055,863	-				-0.8
5,055,863	-				-0.8
5,055,863	-				-0.1
5,055,863	-				-0.5
5,055,863	-				-0.1
5,055,863	-				-1.3
5,055,863	-				+1.8
5,055,863	-				-1.0
5,055,863	-				+1.4
5,055,863	-				-0.6
5,055,863	-				+0.8
5,055,863	-				+0.1
5,055,863	-				-0.2
5,055,863	-				-0.1
5,055,863	-				+0.5
5,055,863	-				-0.0
5,055,863	-				+0.2
5,055,863	-				+0.3
5,055,903	+				-0.6
5,055,916	+				+0.2
5,055,922	-				-0.7
5,055,924	-				+1.5
5,055,951	+				+0.1
5,055,976	+				+0.4
5,055,986	+		GFF5059	0.10	-0.3
5,056,027	+		GFF5059	0.14	-0.5
5,056,062	-		GFF5059	0.17	+0.2
5,056,084	+		GFF5059	0.19	-0.4
5,056,092	-		GFF5059	0.19	+0.7
5,056,103	-		GFF5059	0.20	+0.3
5,056,107	+		GFF5059	0.20	-0.7
5,056,138	-		GFF5059	0.23	-0.8
5,056,162	-		GFF5059	0.25	-1.4
5,056,192	+		GFF5059	0.28	-0.8
5,056,209	-		GFF5059	0.29	+0.8
5,056,209	-		GFF5059	0.29	-1.1
5,056,210	+		GFF5059	0.29	-0.3
5,056,219	-		GFF5059	0.30	+1.3
5,056,220	+		GFF5059	0.30	-1.1
5,056,227	-		GFF5059	0.30	+1.3
5,056,233	-		GFF5059	0.31	-0.7
5,056,259	-		GFF5059	0.33	-0.0
5,056,277	-		GFF5059	0.35	+0.5
5,056,289	+		GFF5059	0.36	+0.6
5,056,304	+		GFF5059	0.37	+0.1
5,056,312	-		GFF5059	0.37	+0.7
5,056,312	-		GFF5059	0.37	-0.9
5,056,312	-		GFF5059	0.37	+1.3
5,056,324	+		GFF5059	0.38	-0.4
5,056,326	+		GFF5059	0.39	+1.1
5,056,333	+		GFF5059	0.39	-0.1
5,056,341	-		GFF5059	0.40	-1.6
5,056,341	-		GFF5059	0.40	+0.1
5,056,341	-		GFF5059	0.40	-1.4
5,056,353	+		GFF5059	0.41	-0.6
5,056,353	+		GFF5059	0.41	-1.7
5,056,353	+		GFF5059	0.41	-1.1
5,056,361	-		GFF5059	0.42	-1.0
5,056,361	-		GFF5059	0.42	-1.8
5,056,361	-		GFF5059	0.42	-0.8
5,056,361	-		GFF5059	0.42	-1.9
5,056,361	-		GFF5059	0.42	+1.0
5,056,422	+		GFF5059	0.47	-0.2
5,056,422	+		GFF5059	0.47	+0.9
5,056,422	+		GFF5059	0.47	+0.9
5,056,423	-		GFF5059	0.47	+0.9
5,056,430	-		GFF5059	0.47	-0.0
5,056,430	-		GFF5059	0.47	-1.1
5,056,430	-		GFF5059	0.47	+1.3
5,056,430	-		GFF5059	0.47	+1.2
5,056,432	+		GFF5059	0.47	+0.8
5,056,432	+		GFF5059	0.47	-0.3
5,056,432	+		GFF5059	0.47	+0.3
5,056,432	+		GFF5059	0.47	-0.8
5,056,432	+		GFF5059	0.47	-3.3
5,056,440	-		GFF5059	0.48	-0.6
5,056,440	-		GFF5059	0.48	-0.7
5,056,440	-		GFF5059	0.48	+0.6
5,056,440	-		GFF5059	0.48	+0.7
5,056,440	-		GFF5059	0.48	+1.3
5,056,440	-		GFF5059	0.48	+0.3
5,056,440	-		GFF5059	0.48	-0.3
5,056,450	-		GFF5059	0.49	+1.1
5,056,455	+		GFF5059	0.49	+1.2
5,056,455	+		GFF5059	0.49	+0.4
5,056,456	-		GFF5059	0.49	+0.5
5,056,463	-		GFF5059	0.50	-0.4
5,056,463	-		GFF5059	0.50	+0.4
5,056,494	-		GFF5059	0.53	+0.8
5,056,511	+		GFF5059	0.54	-0.1
5,056,511	+		GFF5059	0.54	-1.2
5,056,535	+		GFF5059	0.56	+1.6
5,056,617	+		GFF5059	0.63	-1.0
5,056,627	-		GFF5059	0.64	-0.1
5,056,629	+		GFF5059	0.64	+0.1
5,056,661	+		GFF5059	0.67	+0.2
5,056,712	+		GFF5059	0.71	+0.1
5,056,753	+		GFF5059	0.74	+1.1
5,056,753	+		GFF5059	0.74	+0.0
5,056,761	+		GFF5059	0.75	-0.9
5,056,761	-		GFF5059	0.75	-0.6
5,056,767	-		GFF5059	0.75	+1.2
5,056,793	-		GFF5059	0.77	-0.7
5,056,825	+		GFF5059	0.80	+0.6
5,056,825	+		GFF5059	0.80	+1.1
5,056,833	-		GFF5059	0.81	-0.2
5,056,837	-		GFF5059	0.81	+0.6
5,056,837	-		GFF5059	0.81	+0.5
5,056,858	+		GFF5059	0.83	+1.4
5,056,863	+		GFF5059	0.83	+0.6
5,056,877	+		GFF5059	0.84	+0.4
5,056,877	+		GFF5059	0.84	-0.1
5,056,877	+		GFF5059	0.84	-0.3
5,056,877	+		GFF5059	0.84	+0.1
5,056,880	-		GFF5059	0.85	+0.5
5,056,907	+		GFF5059	0.87	-2.4
5,056,911	+		GFF5059	0.87	-1.3
5,056,963	-				+0.3
5,056,963	-				+1.0
5,056,973	+				+0.7
5,056,973	+				+0.8
5,056,981	+				+0.8
5,056,989	-				+0.2
5,057,007	-				+0.8
5,057,022	+				-0.3
5,057,022	+				-0.0
5,057,037	+				+1.1
5,057,068	+				-1.6
5,057,068	+				+0.8
5,057,068	+				+1.0
5,057,068	+				-0.8
5,057,068	+				+0.4
5,057,068	+				-0.4
5,057,068	+				-1.7
5,057,076	-				-1.9
5,057,076	-				+0.1
5,057,076	-				+0.2
5,057,076	-				-2.5
5,057,076	-				-0.3
5,057,076	-				+1.1
5,057,076	-				-0.0
5,057,076	-				-1.0
5,057,091	-				-2.1
5,057,130	-				-0.0
5,057,136	+				+0.1
5,057,136	+				+0.1
5,057,136	+				+0.4
5,057,196	-				+1.1
5,057,214	+				-1.5
5,057,219	+				-1.3
5,057,222	-				-1.1
5,057,222	-				-1.6
5,057,222	-				+0.6
5,057,234	+				+0.7
5,057,242	-				+0.3
5,057,253	+				-0.4
5,057,255	-				-0.8
5,057,261	-				+1.6
5,057,261	-				-0.5
5,057,261	-				+0.1
5,057,267	-				-0.8
5,057,268	-				+1.2
5,057,288	-				-0.8
5,057,293	+				+0.7
5,057,293	+				+0.9
5,057,301	-				+0.8
5,057,301	-				-0.0
5,057,312	+				+0.6
5,057,312	+				+0.4
5,057,315	+				+0.6
5,057,315	+				+0.3
5,057,315	+				-1.6
5,057,315	+				+1.1
5,057,315	+				-0.0
5,057,317	+				+1.1
5,057,320	-				+0.2
5,057,323	-				+0.3
5,057,323	-				+1.7
5,057,323	-				+0.5
5,057,323	-				+0.9
5,057,323	-				-1.8
5,057,323	-				+0.3
5,057,323	-				+0.2
5,057,325	-				+1.3
5,057,349	+				-0.5
5,057,446	+		GFF5060	0.13	+0.2
5,057,453	+		GFF5060	0.15	+0.2
5,057,455	-		GFF5060	0.15	+0.8
5,057,481	+		GFF5060	0.20	+0.7
5,057,481	+		GFF5060	0.20	-0.3
5,057,481	+		GFF5060	0.20	+0.7
5,057,481	+		GFF5060	0.20	+0.3
5,057,481	+		GFF5060	0.20	+0.1
5,057,489	-		GFF5060	0.22	-1.0
5,057,524	+		GFF5060	0.29	+0.4
5,057,560	+		GFF5060	0.37	+0.1
5,057,570	-		GFF5060	0.39	-0.7
5,057,571	-		GFF5060	0.39	+0.2
5,057,573	+		GFF5060	0.40	-0.3
5,057,580	+		GFF5060	0.41	+1.0
5,057,581	-		GFF5060	0.41	-1.5
5,057,583	+		GFF5060	0.42	-2.3
5,057,585	+		GFF5060	0.42	+1.1
5,057,590	+		GFF5060	0.43	-0.4
5,057,611	+		GFF5060	0.47	-0.3
5,057,619	-		GFF5060	0.49	+0.2
5,057,628	+		GFF5060	0.51	-1.9
5,057,634	+		GFF5060	0.52	+0.3
5,057,634	+		GFF5060	0.52	+1.2
5,057,634	+		GFF5060	0.52	-1.5
5,057,634	+		GFF5060	0.52	+0.5
5,057,639	+		GFF5060	0.53	+0.3
5,057,640	+		GFF5060	0.54	-1.0
5,057,642	-		GFF5060	0.54	+0.0
5,057,642	-		GFF5060	0.54	+0.1
5,057,642	-		GFF5060	0.54	+0.2
5,057,647	-		GFF5060	0.55	+0.1
5,057,647	-		GFF5060	0.55	+0.3
5,057,653	+		GFF5060	0.56	+1.6
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