Strain Fitness in Sphingobium sp. HT1-2 around GFF5018

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,010,985	-		GFF5016	0.58	-2.8
5,010,986	-		GFF5016	0.59	+0.4
5,010,990	-		GFF5016	0.59	-0.7
5,010,990	-		GFF5016	0.59	+0.5
5,010,990	-		GFF5016	0.59	-0.0
5,010,998	+		GFF5016	0.61	+0.1
5,011,006	+		GFF5016	0.62	+0.2
5,011,015	-		GFF5016	0.64	-1.5
5,011,064	+		GFF5016	0.72	+1.1
5,011,072	-		GFF5016	0.74	+0.1
5,011,127	+		GFF5016	0.83	-0.9
5,011,151	-		GFF5016	0.87	-0.3
5,011,169	-				+0.4
5,011,177	+				+0.5
5,011,299	-		GFF5017	0.15	+0.0
5,011,299	-		GFF5017	0.15	+1.0
5,011,300	+		GFF5017	0.15	+0.5
5,011,377	-		GFF5017	0.55	+1.4
5,011,394	-		GFF5017	0.64	-0.1
5,011,416	+		GFF5017	0.76	+0.2
5,011,424	-		GFF5017	0.80	-1.4
5,011,424	-		GFF5017	0.80	+0.6
5,011,424	-		GFF5017	0.80	-0.8
5,011,430	-		GFF5017	0.83	-1.5
5,011,443	-				+0.2
5,011,444	+				-0.8
5,011,444	+				+0.7
5,011,444	+				+1.4
5,011,445	-				-1.1
5,011,452	-				+0.1
5,011,452	-				-0.6
5,011,452	-				-0.1
5,011,489	+				-0.9
5,011,489	+				+0.6
5,011,489	+				+1.3
5,011,489	+				-1.5
5,011,497	-				+1.0
5,011,497	-				-1.4
5,011,506	-				+0.2
5,011,523	-				+1.5
5,011,523	-				-0.5
5,011,523	-				+2.0
5,011,525	+				+1.4
5,011,525	+				+0.1
5,011,525	+				-0.1
5,011,552	-				+0.9
5,011,558	+				+0.9
5,011,573	-				-3.0
5,011,624	-				+1.9
5,011,689	-				+0.1
5,011,689	-				-0.3
5,011,707	+				+1.2
5,011,713	-				+0.7
5,011,718	+				+1.6
5,011,726	-				+0.7
5,011,726	-				-0.6
5,011,726	-				-0.6
5,011,731	-				+0.1
5,011,736	-				-1.1
5,011,790	+				+0.4
5,011,790	+				+0.8
5,011,790	+				+0.6
5,011,795	+				+1.2
5,011,796	-				+0.8
5,011,798	-				+0.3
5,011,798	-				-0.3
5,011,801	-				+0.5
5,011,806	+				-0.4
5,011,814	-				+1.3
5,011,847	+				-1.7
5,011,847	+				-0.6
5,011,849	+				+1.1
5,011,855	-				-0.5
5,011,855	-				-0.1
5,011,855	-				+1.7
5,011,855	-				+0.1
5,011,855	-				-0.0
5,011,855	-				-1.5
5,011,864	+				+1.3
5,011,889	+				+1.0
5,011,904	+				+1.0
5,011,912	-				-0.5
5,011,914	+				+0.3
5,011,914	+				+0.2
5,011,914	+				-0.8
5,011,914	+				-0.5
5,011,917	-				+0.4
5,011,917	-				+0.5
5,011,922	-				+0.8
5,011,922	-				-1.7
5,011,927	+				+0.6
5,011,986	+				-1.1
5,011,986	+				-0.8
5,011,994	-				+0.6
5,012,017	-				+1.4
5,012,037	-		GFF5018	0.11	-0.8
5,012,041	+		GFF5018	0.12	-0.6
5,012,049	-		GFF5018	0.14	-0.1
5,012,064	-		GFF5018	0.17	+0.9
5,012,073	+		GFF5018	0.19	-0.1
5,012,073	+		GFF5018	0.19	+1.7
5,012,081	-		GFF5018	0.21	+1.3
5,012,081	-		GFF5018	0.21	-0.8
5,012,081	-		GFF5018	0.21	+0.0
5,012,081	-		GFF5018	0.21	+0.1
5,012,096	+		GFF5018	0.24	-0.7
5,012,099	+		GFF5018	0.24	+0.2
5,012,147	-		GFF5018	0.35	+1.0
5,012,155	-		GFF5018	0.36	-0.5
5,012,168	-		GFF5018	0.39	+1.4
5,012,218	+		GFF5018	0.50	-0.3
5,012,237	-		GFF5018	0.54	-1.4
5,012,237	-		GFF5018	0.54	+0.9
5,012,250	+		GFF5018	0.56	+0.1
5,012,256	+		GFF5018	0.58	+1.7
5,012,308	-		GFF5018	0.69	+1.6
5,012,326	+		GFF5018	0.72	-0.1
5,012,326	+		GFF5018	0.72	+1.3
5,012,330	+		GFF5018	0.73	+0.5
5,012,335	+		GFF5018	0.74	-1.2
5,012,416	-				+0.2
5,012,423	-				-0.4
5,012,451	+				+0.8
5,012,457	+				-1.0
5,012,487	+				+0.5
5,012,497	-				+0.6
5,012,518	+				+0.9
5,012,518	+				-0.6
5,012,518	+				-2.7
5,012,526	+				+2.4
5,012,526	-				+1.8
5,012,561	-				+0.5
5,012,613	+		GFF5019	0.11	-0.1
5,012,613	+		GFF5019	0.11	+1.7
5,012,621	-		GFF5019	0.12	-1.1
5,012,621	-		GFF5019	0.12	-0.2
5,012,626	-		GFF5019	0.13	+0.6
5,012,636	-		GFF5019	0.15	-0.9
5,012,649	+		GFF5019	0.18	+0.7
5,012,649	+		GFF5019	0.18	-1.8
5,012,676	-		GFF5019	0.23	+0.2
5,012,750	+		GFF5019	0.37	-0.5
5,012,750	+		GFF5019	0.37	+1.4
5,012,750	+		GFF5019	0.37	-1.2
5,012,758	-		GFF5019	0.39	+0.0
5,012,768	-		GFF5019	0.41	-0.4
5,012,829	-		GFF5019	0.53	-1.5
5,012,838	+		GFF5019	0.54	-0.1
5,012,845	+		GFF5019	0.56	+1.2
5,012,845	+		GFF5019	0.56	+0.1
5,012,846	-		GFF5019	0.56	+0.5
5,012,869	-		GFF5019	0.60	+0.5
5,012,871	+		GFF5019	0.61	+0.1
5,012,882	+		GFF5019	0.63	+0.4
5,012,912	+		GFF5019	0.69	+0.0
5,012,913	-		GFF5019	0.69	+0.2
5,012,920	-		GFF5019	0.70	+0.9
5,012,920	-		GFF5019	0.70	-0.2
5,012,933	+		GFF5019	0.73	-1.1
5,012,933	+		GFF5019	0.73	-0.3
5,012,938	+		GFF5019	0.74	+0.6
5,012,943	+		GFF5019	0.75	+0.9
5,012,943	+		GFF5019	0.75	-0.7
5,012,943	+		GFF5019	0.75	+1.3
5,012,943	+		GFF5019	0.75	-1.7
5,012,943	+		GFF5019	0.75	-1.7
5,012,943	+		GFF5019	0.75	+1.4
5,012,943	+		GFF5019	0.75	-0.5
5,012,943	+		GFF5019	0.75	+0.3
5,012,943	+		GFF5019	0.75	+0.0
5,012,943	+		GFF5019	0.75	+0.1
5,012,943	+		GFF5019	0.75	+0.1
5,012,943	+		GFF5019	0.75	+0.6
5,012,943	+		GFF5019	0.75	+1.2
5,012,943	+		GFF5019	0.75	+0.4
5,012,946	-		GFF5019	0.75	+0.3
5,012,951	-		GFF5019	0.76	+0.4
5,012,951	-		GFF5019	0.76	+1.2
5,012,951	-		GFF5019	0.76	+0.2
5,012,951	-		GFF5019	0.76	+0.4
5,012,951	-		GFF5019	0.76	+0.5
5,012,951	-		GFF5019	0.76	-0.1
5,012,951	-		GFF5019	0.76	+1.1
5,012,951	-		GFF5019	0.76	-0.2
5,012,951	-		GFF5019	0.76	-0.8
5,012,951	-		GFF5019	0.76	+0.3
5,012,975	-		GFF5019	0.81	-1.7
5,012,978	+		GFF5019	0.82	+0.3
5,012,999	+		GFF5019	0.86	+0.1
5,013,005	-		GFF5019	0.87	-0.5
5,013,007	-		GFF5019	0.87	+0.5
5,013,009	+		GFF5019	0.88	+1.0
5,013,009	+		GFF5019	0.88	+0.2
5,013,009	+		GFF5019	0.88	+0.7
5,013,009	+		GFF5019	0.88	+0.8
5,013,009	+		GFF5019	0.88	+0.5
5,013,009	+		GFF5019	0.88	-0.1
5,013,009	+		GFF5019	0.88	+0.9
5,013,014	+		GFF5019	0.89	+1.2
5,013,014	+		GFF5019	0.89	+0.1
5,013,017	-		GFF5019	0.89	+0.0
5,013,017	-		GFF5019	0.89	+0.6
5,013,017	-		GFF5019	0.89	-0.8
5,013,017	-		GFF5019	0.89	+1.1
5,013,022	-				+0.9
5,013,022	-				+0.0
5,013,036	+				+0.7
5,013,036	-				-1.0
5,013,079	+				-0.0
5,013,087	-				-0.6
5,013,102	-				+0.4
5,013,110	+				-0.3
5,013,159	+				-0.3
5,013,159	+				+0.9
5,013,159	+				+0.1
5,013,159	+				+0.7
5,013,159	+				-1.5
5,013,159	+				+0.2
5,013,159	+				+0.2
5,013,159	+				-0.5
5,013,159	+				+1.3
5,013,159	+				+0.4
5,013,159	+				+0.3
5,013,159	+				-0.7
5,013,159	+				+0.8
5,013,167	-				+0.0
5,013,167	-				-1.1
5,013,167	-				+1.4
5,013,167	-				-0.7
5,013,167	-				-0.2
5,013,167	-				+0.8
5,013,167	-				-1.8
5,013,167	-				+1.6
5,013,167	-				-1.8
5,013,167	-				-0.7
5,013,167	-				-1.4
5,013,167	-				+0.2
5,013,167	-				+0.2
5,013,167	-				-0.7
5,013,167	-				-0.8
5,013,167	-				+0.8
5,013,192	-				-0.1
5,013,226	-				-0.8
5,013,229	+				+1.0
5,013,234	+				-0.2
5,013,234	+				+0.4
5,013,234	+				+1.9
5,013,234	+				-0.2
5,013,234	+				-0.4
5,013,242	-				-0.5
5,013,258	+				-0.9
5,013,282	-				-1.5
5,013,290	+				-0.3
5,013,331	+				+1.7
5,013,331	+				+0.6
5,013,331	+				+1.1
5,013,331	+				+0.9
5,013,339	-				-0.0
5,013,362	+				-0.4
5,013,369	-				+0.9
5,013,398	+				+0.5
5,013,406	-				+0.3
5,013,440	-				-0.5
5,013,445	-				+0.9