Strain Fitness in Sphingobium sp. HT1-2 around GFF4959

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,955,019	+				-2.0
4,955,063	-				-2.2
4,955,090	-				-1.6
4,955,147	+				-2.4
4,955,152	+				-0.4
4,955,155	-				-1.5
4,955,160	-				-0.3
4,955,160	-				+0.0
4,955,160	-				-1.5
4,955,184	-				-1.4
4,955,184	-				-0.6
4,955,220	+				-1.0
4,955,220	+				+0.5
4,955,220	+				-0.3
4,955,220	+				+0.1
4,955,220	+				-0.9
4,955,220	+				-0.8
4,955,228	-				-0.9
4,955,228	-				-0.5
4,955,228	-				-1.1
4,955,228	-				-0.3
4,955,228	-				-1.1
4,955,228	-				+0.1
4,955,228	-				-1.4
4,955,237	+				-0.3
4,955,253	+				-0.4
4,955,270	+		GFF4958	0.10	-1.3
4,955,273	-		GFF4958	0.11	-0.5
4,955,291	+		GFF4958	0.14	-0.4
4,955,291	+		GFF4958	0.14	-1.1
4,955,299	-		GFF4958	0.15	+0.6
4,955,299	-		GFF4958	0.15	+0.1
4,955,299	-		GFF4958	0.15	-0.4
4,955,314	-		GFF4958	0.18	+0.1
4,955,316	+		GFF4958	0.18	-1.1
4,955,347	+		GFF4958	0.23	-1.8
4,955,347	+		GFF4958	0.23	-1.1
4,955,412	+		GFF4958	0.34	+0.2
4,955,414	-		GFF4958	0.34	-2.4
4,955,419	-		GFF4958	0.35	-0.0
4,955,419	-		GFF4958	0.35	-0.4
4,955,451	-		GFF4958	0.40	+0.7
4,955,476	-		GFF4958	0.44	+0.5
4,955,479	+		GFF4958	0.45	-0.7
4,955,479	+		GFF4958	0.45	-0.2
4,955,479	+		GFF4958	0.45	-0.4
4,955,487	-		GFF4958	0.46	-0.1
4,955,487	-		GFF4958	0.46	-1.0
4,955,487	-		GFF4958	0.46	+0.7
4,955,501	+		GFF4958	0.49	+0.1
4,955,534	+		GFF4958	0.54	-2.0
4,955,542	-		GFF4958	0.55	-1.5
4,955,542	-		GFF4958	0.55	-0.1
4,955,542	-		GFF4958	0.55	+0.2
4,955,542	-		GFF4958	0.55	+0.1
4,955,542	-		GFF4958	0.55	-1.6
4,955,548	+		GFF4958	0.56	-1.4
4,955,549	-		GFF4958	0.56	-1.1
4,955,549	-		GFF4958	0.56	-0.6
4,955,556	-		GFF4958	0.58	-1.0
4,955,556	-		GFF4958	0.58	+0.3
4,955,558	+		GFF4958	0.58	-1.3
4,955,582	-		GFF4958	0.62	-1.3
4,955,583	-		GFF4958	0.62	+0.2
4,955,585	+		GFF4958	0.62	-0.5
4,955,587	-		GFF4958	0.63	+0.6
4,955,588	-		GFF4958	0.63	-2.1
4,955,593	-		GFF4958	0.64	-1.1
4,955,593	-		GFF4958	0.64	-1.6
4,955,617	+		GFF4958	0.68	-1.0
4,955,625	-		GFF4958	0.69	-1.8
4,955,625	-		GFF4958	0.69	+0.1
4,955,626	-		GFF4958	0.69	-0.1
4,955,673	+		GFF4958	0.77	+0.7
4,955,699	-		GFF4958	0.81	+0.2
4,955,704	-		GFF4958	0.82	-0.9
4,955,707	+		GFF4958	0.83	-1.1
4,955,712	+		GFF4958	0.83	-1.9
4,955,720	-		GFF4958	0.85	-0.3
4,955,773	+				+0.6
4,955,773	+				+1.0
4,955,781	-				+0.0
4,955,807	-				+0.4
4,955,807	-				-2.1
4,955,812	-				-2.5
4,955,816	+				-0.2
4,955,841	-				+0.3
4,955,842	+				+0.1
4,955,847	+				-2.4
4,955,877	+				-0.4
4,955,885	-				+0.7
4,955,918	+				-0.1
4,955,963	-				+0.0
4,955,965	+				-0.6
4,955,973	-				-0.6
4,955,973	-				+1.0
4,955,986	+				-0.9
4,955,989	-				-2.4
4,955,999	+				-1.6
4,956,007	-				-1.0
4,956,012	-				+0.0
4,956,042	-		GFF4959	0.11	+0.9
4,956,060	+		GFF4959	0.14	-0.2
4,956,060	+		GFF4959	0.14	-0.4
4,956,066	-		GFF4959	0.15	-0.0
4,956,066	-		GFF4959	0.15	+1.6
4,956,068	-		GFF4959	0.15	-1.5
4,956,068	-		GFF4959	0.15	-0.9
4,956,068	-		GFF4959	0.15	-1.2
4,956,138	+		GFF4959	0.28	-0.9
4,956,146	-		GFF4959	0.29	-0.9
4,956,155	+		GFF4959	0.31	-2.0
4,956,155	+		GFF4959	0.31	-2.0
4,956,155	+		GFF4959	0.31	-1.2
4,956,155	+		GFF4959	0.31	-2.4
4,956,155	+		GFF4959	0.31	+0.9
4,956,155	+		GFF4959	0.31	-0.1
4,956,155	+		GFF4959	0.31	-0.7
4,956,155	+		GFF4959	0.31	+0.6
4,956,158	-		GFF4959	0.31	+0.0
4,956,163	-		GFF4959	0.32	-1.7
4,956,163	-		GFF4959	0.32	-2.2
4,956,163	-		GFF4959	0.32	-1.5
4,956,163	-		GFF4959	0.32	-0.0
4,956,163	-		GFF4959	0.32	-0.2
4,956,163	-		GFF4959	0.32	-0.5
4,956,168	+		GFF4959	0.33	+0.0
4,956,168	-		GFF4959	0.33	-0.8
4,956,185	+		GFF4959	0.36	-2.7
4,956,229	+		GFF4959	0.44	-0.2
4,956,233	-		GFF4959	0.45	+0.5
4,956,235	+		GFF4959	0.45	-1.3
4,956,245	+		GFF4959	0.47	-0.6
4,956,250	+		GFF4959	0.48	+0.4
4,956,250	+		GFF4959	0.48	-1.3
4,956,250	+		GFF4959	0.48	-3.0
4,956,253	-		GFF4959	0.48	-0.0
4,956,253	-		GFF4959	0.48	+0.3
4,956,253	-		GFF4959	0.48	+0.2
4,956,253	-		GFF4959	0.48	+0.1
4,956,253	-		GFF4959	0.48	+0.3
4,956,255	+		GFF4959	0.48	-1.0
4,956,257	+		GFF4959	0.49	-0.9
4,956,257	+		GFF4959	0.49	+0.6
4,956,257	+		GFF4959	0.49	+1.1
4,956,258	+		GFF4959	0.49	-0.0
4,956,263	-		GFF4959	0.50	-0.9
4,956,263	-		GFF4959	0.50	-0.0
4,956,263	-		GFF4959	0.50	-0.5
4,956,265	-		GFF4959	0.50	+0.1
4,956,265	-		GFF4959	0.50	-0.3
4,956,265	-		GFF4959	0.50	-0.5
4,956,265	-		GFF4959	0.50	-1.5
4,956,267	+		GFF4959	0.51	-0.4
4,956,272	+		GFF4959	0.52	-2.4
4,956,275	-		GFF4959	0.52	-1.2
4,956,281	+		GFF4959	0.53	-0.3
4,956,291	+		GFF4959	0.55	+0.7
4,956,299	-		GFF4959	0.56	-2.3
4,956,299	-		GFF4959	0.56	-0.5
4,956,312	+		GFF4959	0.59	-2.6
4,956,320	-		GFF4959	0.60	+0.1
4,956,320	-		GFF4959	0.60	+0.5
4,956,320	-		GFF4959	0.60	+0.9
4,956,325	+		GFF4959	0.61	+0.0
4,956,325	+		GFF4959	0.61	-1.7
4,956,325	+		GFF4959	0.61	-0.8
4,956,330	+		GFF4959	0.62	-0.9
4,956,333	-		GFF4959	0.62	-1.5
4,956,333	-		GFF4959	0.62	+1.3
4,956,333	-		GFF4959	0.62	-2.4
4,956,333	-		GFF4959	0.62	+0.0
4,956,333	-		GFF4959	0.62	-0.6
4,956,333	-		GFF4959	0.62	-0.7
4,956,333	-		GFF4959	0.62	-1.1
4,956,333	-		GFF4959	0.62	-0.0
4,956,333	-		GFF4959	0.62	-0.2
4,956,333	-		GFF4959	0.62	-0.5
4,956,333	-		GFF4959	0.62	-0.4
4,956,333	-		GFF4959	0.62	-1.0
4,956,333	-		GFF4959	0.62	-0.4
4,956,333	-		GFF4959	0.62	-2.4
4,956,333	-		GFF4959	0.62	-2.3
4,956,333	-		GFF4959	0.62	+0.6
4,956,333	-		GFF4959	0.62	-0.8
4,956,339	+		GFF4959	0.63	+0.3
4,956,340	+		GFF4959	0.64	-2.7
4,956,348	-		GFF4959	0.65	-0.4
4,956,348	-		GFF4959	0.65	-1.6
4,956,371	+		GFF4959	0.69	-0.0
4,956,371	+		GFF4959	0.69	-0.4
4,956,371	-		GFF4959	0.69	+0.4
4,956,372	-		GFF4959	0.69	+0.3
4,956,379	-		GFF4959	0.71	-2.1
4,956,379	-		GFF4959	0.71	-1.5
4,956,398	+		GFF4959	0.74	-0.5
4,956,398	+		GFF4959	0.74	-0.7
4,956,406	-		GFF4959	0.75	-0.3
4,956,406	-		GFF4959	0.75	+0.5
4,956,406	-		GFF4959	0.75	-1.0
4,956,417	+		GFF4959	0.77	-1.6
4,956,425	-		GFF4959	0.79	-0.1
4,956,425	-		GFF4959	0.79	-0.3
4,956,425	-		GFF4959	0.79	+0.1
4,956,464	-		GFF4959	0.86	-0.7
4,956,479	+		GFF4959	0.88	-1.7
4,956,481	+		GFF4959	0.89	-2.7
4,956,483	+		GFF4959	0.89	+0.4
4,956,514	-				+0.4
4,956,529	-				+0.1
4,956,559	-				-0.7
4,956,575	-				-2.3
4,956,600	-				-0.2
4,956,622	+				-1.2
4,956,628	+				+1.2
4,956,637	+				-0.8
4,956,667	+				-1.7
4,956,672	+				-1.6
4,956,672	+				+0.2
4,956,672	+				-1.5
4,956,672	+				-0.5
4,956,672	+				-1.7
4,956,672	+				-0.2
4,956,672	+				+1.5
4,956,672	+				-1.6
4,956,672	+				-0.5
4,956,672	+				+0.4
4,956,680	-				-0.5
4,956,680	-				+0.3
4,956,680	-				+0.1
4,956,680	-				+0.7
4,956,680	-				+0.0
4,956,680	-				-0.0
4,956,680	-				-0.7
4,956,684	+				-0.5
4,956,684	+				+0.1
4,956,693	-				-2.8
4,956,693	-				-2.6
4,956,693	-				-0.3
4,956,693	-				-1.2
4,956,696	+				-0.2
4,956,696	+				+0.2
4,956,696	+				-1.2
4,956,702	+				-0.0
4,956,702	+				-0.4
4,956,702	+				-0.5
4,956,703	-				-0.3
4,956,704	-				-0.5
4,956,704	-				+0.0
4,956,704	-				-1.5
4,956,710	-				-2.1
4,956,710	-				+0.2
4,956,710	-				-1.2
4,956,712	-				-1.5
4,956,719	+				+0.0
4,956,727	-				-1.4
4,956,757	-		GFF4960	0.14	-0.3
4,956,784	+		GFF4960	0.20	-0.5
4,956,784	+		GFF4960	0.20	-0.4
4,956,784	+		GFF4960	0.20	-0.7
4,956,792	-		GFF4960	0.22	-3.8
4,956,799	-		GFF4960	0.23	-1.5
4,956,799	-		GFF4960	0.23	-1.9
4,956,818	+		GFF4960	0.27	-2.3
4,956,818	+		GFF4960	0.27	+0.3
4,956,831	-		GFF4960	0.30	-0.0
4,956,831	-		GFF4960	0.30	+0.2
4,956,841	-		GFF4960	0.32	-2.5
4,956,866	+		GFF4960	0.37	-0.7
4,956,875	-		GFF4960	0.39	-1.7
4,956,882	+		GFF4960	0.40	+0.2
4,956,882	+		GFF4960	0.40	+0.3
4,956,882	-		GFF4960	0.40	-1.5
4,956,882	-		GFF4960	0.40	+0.2
4,956,883	-		GFF4960	0.40	-0.1
4,956,884	-		GFF4960	0.41	+0.2
4,956,885	-		GFF4960	0.41	-2.1
4,956,888	+		GFF4960	0.41	-0.4
4,956,890	-		GFF4960	0.42	-1.9
4,956,890	-		GFF4960	0.42	+0.5
4,956,903	+		GFF4960	0.45	+0.1
4,956,992	-		GFF4960	0.63	+0.2
4,957,011	+		GFF4960	0.67	-0.4
4,957,013	+		GFF4960	0.67	-1.1
4,957,013	+		GFF4960	0.67	-0.5
4,957,013	+		GFF4960	0.67	-1.0
4,957,018	+		GFF4960	0.68	+0.3
4,957,018	+		GFF4960	0.68	+0.5
4,957,021	-		GFF4960	0.69	-1.4
4,957,023	+		GFF4960	0.69	-1.6
4,957,025	+		GFF4960	0.70	-1.8
4,957,026	-		GFF4960	0.70	-1.0
4,957,031	-		GFF4960	0.71	-1.2
4,957,040	+		GFF4960	0.73	-0.3
4,957,046	+		GFF4960	0.74	-0.7
4,957,046	+		GFF4960	0.74	-0.5
4,957,046	+		GFF4960	0.74	-0.1
4,957,046	+		GFF4960	0.74	-1.4
4,957,054	-		GFF4960	0.76	-0.4
4,957,054	-		GFF4960	0.76	-0.3
4,957,055	+		GFF4960	0.76	-0.2
4,957,055	+		GFF4960	0.76	-0.0
4,957,060	+		GFF4960	0.77	+0.0
4,957,079	+		GFF4960	0.81	+0.5
4,957,089	-		GFF4960	0.83	+0.6
4,957,089	-		GFF4960	0.83	+0.1
4,957,094	-		GFF4960	0.84	+0.9
4,957,120	+		GFF4960	0.89	+0.0
4,957,135	-				-0.7
4,957,137	+				+0.8
4,957,137	+				-0.4
4,957,147	-				-1.9
4,957,149	+				-0.2
4,957,172	-				-0.5
4,957,210	+				+0.8
4,957,210	+				-2.8
4,957,243	-				-2.2
4,957,275	+				-0.4
4,957,280	-				+0.8