Strain Fitness in Sphingobium sp. HT1-2 around GFF4944

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,933,334	-				-0.0
4,933,383	+				+0.5
4,933,398	-				-2.4
4,933,404	+				-1.1
4,933,414	+				-0.7
4,933,431	-				-2.5
4,933,471	+				-0.8
4,933,476	+				+0.2
4,933,479	+				+0.7
4,933,481	+				-0.2
4,933,487	+				+0.3
4,933,489	+				-1.2
4,933,514	-				-0.7
4,933,517	+				-2.0
4,933,523	+				-1.3
4,933,523	+				+1.0
4,933,526	-				-2.9
4,933,526	-				+0.7
4,933,528	+				-1.8
4,933,528	+				-0.8
4,933,528	+				-0.5
4,933,531	-				-2.9
4,933,531	-				+0.0
4,933,536	-				-1.6
4,933,536	-				-0.9
4,933,536	-				-0.5
4,933,536	-				+0.9
4,933,555	+				-0.5
4,933,586	-		GFF4943	0.15	+1.2
4,933,586	-		GFF4943	0.15	-1.3
4,933,586	-		GFF4943	0.15	-0.8
4,933,586	-		GFF4943	0.15	-1.6
4,933,586	-		GFF4943	0.15	+0.9
4,933,593	+		GFF4943	0.17	+0.4
4,933,596	-		GFF4943	0.17	-1.4
4,933,597	+		GFF4943	0.18	-2.0
4,933,601	-		GFF4943	0.19	-0.3
4,933,622	-		GFF4943	0.24	-1.5
4,933,630	+		GFF4943	0.25	-0.0
4,933,630	+		GFF4943	0.25	-1.8
4,933,638	-		GFF4943	0.27	-0.4
4,933,638	-		GFF4943	0.27	-2.7
4,933,657	+		GFF4943	0.32	-0.5
4,933,662	+		GFF4943	0.33	-1.2
4,933,673	+		GFF4943	0.35	-0.9
4,933,678	+		GFF4943	0.37	-0.9
4,933,722	+		GFF4943	0.47	-2.5
4,933,740	-		GFF4943	0.51	+0.2
4,933,741	-		GFF4943	0.51	-0.7
4,933,775	+		GFF4943	0.59	-1.6
4,933,794	-		GFF4943	0.64	+0.1
4,933,814	+		GFF4943	0.68	-0.7
4,933,820	-		GFF4943	0.70	-1.5
4,933,826	+		GFF4943	0.71	+0.2
4,933,857	+		GFF4943	0.78	-0.5
4,933,866	-		GFF4943	0.80	-1.0
4,933,867	-		GFF4943	0.81	-0.6
4,933,887	+		GFF4943	0.85	-1.4
4,933,893	-		GFF4943	0.87	-1.2
4,933,895	+		GFF4943	0.87	-0.2
4,933,897	+		GFF4943	0.88	-0.8
4,933,905	-		GFF4943	0.90	-0.2
4,933,944	+				-1.8
4,933,952	-				-0.8
4,933,952	-				-0.4
4,933,952	-				-0.1
4,933,963	+				-1.1
4,933,963	+				-1.6
4,933,963	+				-2.0
4,933,963	+				-2.1
4,933,963	+				-0.5
4,933,963	+				+0.6
4,933,963	+				-1.5
4,933,963	+				+0.5
4,933,963	+				-2.2
4,933,971	-				+0.2
4,933,971	-				-2.2
4,933,971	-				-0.5
4,933,973	+				-1.7
4,933,976	-				+0.5
4,933,993	+				-0.6
4,933,995	+				-2.2
4,933,995	+				-0.4
4,934,006	+				+0.3
4,934,032	+				-0.5
4,934,032	+				-1.4
4,934,032	+				-1.8
4,934,032	+				-2.3
4,934,032	+				-0.2
4,934,032	+				-0.0
4,934,032	+				+1.5
4,934,032	+				-0.9
4,934,032	+				-0.4
4,934,037	+				-1.4
4,934,040	-				-1.2
4,934,040	-				+0.6
4,934,040	-				+0.3
4,934,040	-				+0.3
4,934,040	-				-2.3
4,934,040	-				-0.9
4,934,040	-				+0.2
4,934,040	-				-0.3
4,934,042	+				-0.2
4,934,042	+				-1.3
4,934,045	-				-0.2
4,934,047	+				-1.2
4,934,047	+				+0.4
4,934,047	+				-1.6
4,934,047	+				-0.2
4,934,049	+				+1.4
4,934,050	-				+0.1
4,934,050	-				-2.7
4,934,055	-				+0.0
4,934,055	-				-0.7
4,934,055	-				-1.3
4,934,055	-				-1.7
4,934,056	+				-1.7
4,934,064	-				-1.9
4,934,064	-				-1.0
4,934,069	-				+0.9
4,934,078	+				-0.8
4,934,097	+				+0.6
4,934,113	+				-0.3
4,934,121	-				+0.5
4,934,168	+				-0.1
4,934,168	+				+0.4
4,934,172	+				-0.6
4,934,176	-				-0.8
4,934,176	-				-0.1
4,934,176	-				-0.7
4,934,186	-				-1.1
4,934,196	-				+0.0
4,934,196	-				-0.7
4,934,201	-				+0.0
4,934,215	+				+0.6
4,934,223	-				-1.8
4,934,223	-				+0.2
4,934,241	+				-2.5
4,934,249	-				-0.6
4,934,294	-				-1.4
4,934,321	+				-0.2
4,934,329	-				-0.7
4,934,345	-				+0.4
4,934,370	-		GFF4944	0.11	-2.4
4,934,370	-		GFF4944	0.11	-1.8
4,934,379	+		GFF4944	0.13	+0.4
4,934,383	-		GFF4944	0.14	-1.7
4,934,384	+		GFF4944	0.14	-2.0
4,934,384	+		GFF4944	0.14	-1.5
4,934,387	-		GFF4944	0.15	-0.2
4,934,395	+		GFF4944	0.16	-0.4
4,934,402	-		GFF4944	0.18	-1.4
4,934,415	+		GFF4944	0.20	+0.6
4,934,422	+		GFF4944	0.22	+0.2
4,934,422	+		GFF4944	0.22	-0.2
4,934,422	+		GFF4944	0.22	-0.4
4,934,422	+		GFF4944	0.22	+1.2
4,934,423	-		GFF4944	0.22	-0.4
4,934,430	-		GFF4944	0.23	+0.0
4,934,430	-		GFF4944	0.23	-0.3
4,934,430	-		GFF4944	0.23	+0.5
4,934,430	-		GFF4944	0.23	-0.9
4,934,431	+		GFF4944	0.23	+0.3
4,934,434	+		GFF4944	0.24	-1.7
4,934,439	-		GFF4944	0.25	-1.0
4,934,439	-		GFF4944	0.25	-0.7
4,934,439	-		GFF4944	0.25	-0.3
4,934,452	+		GFF4944	0.28	-0.3
4,934,452	+		GFF4944	0.28	-1.6
4,934,455	-		GFF4944	0.28	-1.6
4,934,460	-		GFF4944	0.29	-0.6
4,934,475	-		GFF4944	0.32	-0.0
4,934,519	-		GFF4944	0.41	-1.0
4,934,576	+		GFF4944	0.53	-0.8
4,934,584	-		GFF4944	0.54	+0.6
4,934,622	+		GFF4944	0.62	-1.0
4,934,664	-		GFF4944	0.70	+0.6
4,934,673	+		GFF4944	0.72	-0.0
4,934,675	-		GFF4944	0.72	-0.3
4,934,681	-		GFF4944	0.74	+0.1
4,934,684	+		GFF4944	0.74	-1.0
4,934,694	-		GFF4944	0.76	-0.3
4,934,720	+		GFF4944	0.82	+1.0
4,934,735	+		GFF4944	0.85	+0.9
4,934,735	+		GFF4944	0.85	+0.1
4,934,735	+		GFF4944	0.85	-0.1
4,934,735	+		GFF4944	0.85	-0.6
4,934,735	+		GFF4944	0.85	-2.2
4,934,735	+		GFF4944	0.85	+0.8
4,934,735	+		GFF4944	0.85	+0.2
4,934,736	-		GFF4944	0.85	-0.6
4,934,743	-		GFF4944	0.86	-1.0
4,934,743	-		GFF4944	0.86	-1.5
4,934,743	-		GFF4944	0.86	+0.3
4,934,745	+		GFF4944	0.87	-1.6
4,934,753	-		GFF4944	0.88	-0.8
4,934,753	-		GFF4944	0.88	-0.9
4,934,781	+				-0.4
4,934,795	+				-0.7
4,934,795	+				+0.0
4,934,800	+				-1.4
4,934,803	-				-0.4
4,934,832	+				+0.5
4,934,836	-				-0.6
4,934,858	+				-1.1
4,934,869	-				-0.4
4,934,892	+				-0.1
4,934,907	-				-2.0
4,934,952	-				+0.2
4,934,964	-				-0.9
4,934,978	+				+0.0
4,934,984	+				+1.0
4,934,986	+				-0.2
4,934,986	-				-1.3
4,934,987	-				+0.6
4,934,992	-				-0.6
4,934,994	-				-0.5
4,934,994	-				+0.3
4,934,999	-				-2.9
4,935,004	-				+0.3
4,935,118	-				+0.8
4,935,226	-				-0.6