Strain Fitness in Sphingobium sp. HT1-2 around GFF4936

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,926,758	+		GFF4934	0.86	-2.3
4,926,783	-		GFF4934	0.89	-2.3
4,926,783	-		GFF4934	0.89	-0.7
4,926,794	+				-2.2
4,926,799	+				-2.0
4,926,807	+				-2.6
4,926,807	-				-1.1
4,926,812	-				-0.3
4,926,812	-				-0.0
4,926,818	+				+0.1
4,926,826	-				-0.6
4,926,826	-				+0.3
4,926,827	+				-1.5
4,926,847	-				-2.2
4,926,864	+				+0.2
4,926,866	+				-0.1
4,926,872	-				-1.5
4,926,874	+				-0.3
4,926,882	+				-1.3
4,926,890	+				-0.2
4,926,890	+				-0.5
4,926,890	+				-0.6
4,926,890	-				-0.9
4,926,895	+				+0.2
4,926,898	-				-1.1
4,926,898	-				-2.9
4,926,931	-				-2.1
4,926,931	-				-1.8
4,926,948	+				-0.3
4,926,948	+				-2.5
4,926,954	-				-0.6
4,926,974	-				+0.2
4,926,980	+				-0.3
4,926,980	+				-1.2
4,926,982	+				-1.8
4,926,988	-				-1.8
4,926,988	-				+0.5
4,926,990	-				-0.6
4,926,990	-				-0.5
4,926,997	+				-0.6
4,926,999	+				-1.4
4,927,007	-				-1.9
4,927,026	+				-2.3
4,927,056	+				-1.1
4,927,056	+				-1.7
4,927,066	-		GFF4935	0.11	-1.7
4,927,079	-		GFF4935	0.13	-1.4
4,927,087	+		GFF4935	0.14	+0.4
4,927,097	-		GFF4935	0.15	+0.3
4,927,111	+		GFF4935	0.17	-0.9
4,927,117	-		GFF4935	0.18	-1.1
4,927,124	+		GFF4935	0.19	-0.3
4,927,143	-		GFF4935	0.22	-1.0
4,927,149	+		GFF4935	0.22	-0.4
4,927,165	+		GFF4935	0.25	-0.5
4,927,165	+		GFF4935	0.25	-0.8
4,927,165	+		GFF4935	0.25	-1.5
4,927,180	+		GFF4935	0.27	-1.9
4,927,254	+		GFF4935	0.37	-2.0
4,927,255	-		GFF4935	0.37	-0.0
4,927,258	-		GFF4935	0.37	-0.4
4,927,259	+		GFF4935	0.37	-0.9
4,927,271	-		GFF4935	0.39	-0.9
4,927,288	+		GFF4935	0.41	-0.9
4,927,293	-		GFF4935	0.42	+0.6
4,927,296	-		GFF4935	0.42	-0.9
4,927,308	-		GFF4935	0.44	-0.7
4,927,309	-		GFF4935	0.44	+0.2
4,927,309	-		GFF4935	0.44	-0.8
4,927,309	-		GFF4935	0.44	-1.1
4,927,315	-		GFF4935	0.45	+0.6
4,927,327	-		GFF4935	0.47	-1.1
4,927,327	-		GFF4935	0.47	-0.5
4,927,327	-		GFF4935	0.47	-0.7
4,927,353	+		GFF4935	0.50	-1.2
4,927,382	+		GFF4935	0.54	-2.9
4,927,393	+		GFF4935	0.56	+0.7
4,927,403	+		GFF4935	0.57	-0.7
4,927,431	-		GFF4935	0.61	-0.8
4,927,438	+		GFF4935	0.62	-2.6
4,927,458	-		GFF4935	0.64	-1.0
4,927,477	-		GFF4935	0.67	-0.6
4,927,493	+		GFF4935	0.69	-2.2
4,927,501	-		GFF4935	0.70	-1.2
4,927,518	-		GFF4935	0.73	-1.1
4,927,607	+		GFF4935	0.85	-0.8
4,927,613	-		GFF4935	0.86	-0.8
4,927,615	-		GFF4935	0.86	-0.2
4,927,619	+		GFF4935	0.86	-1.5
4,927,634	+		GFF4935	0.88	-0.1
4,927,634	+		GFF4935	0.88	-0.8
4,927,642	-		GFF4935	0.90	-3.6
4,927,642	-		GFF4935	0.90	+0.4
4,927,642	-		GFF4935	0.90	-1.7
4,927,642	-		GFF4935	0.90	-0.7
4,927,662	+				-3.0
4,927,668	+				+1.6
4,927,670	-				-0.6
4,927,676	-				-0.6
4,927,699	+				-1.7
4,927,714	+				-0.8
4,927,729	+				-0.5
4,927,729	+				-0.7
4,927,748	+				-2.2
4,927,773	+				-3.1
4,927,799	-				+0.6
4,927,800	+				-1.4
4,927,800	+				-1.9
4,927,808	-				+0.3
4,927,819	+				+0.7
4,927,819	+				-0.1
4,927,819	+				-0.8
4,927,819	+				-1.3
4,927,821	+				-0.4
4,927,821	+				+0.4
4,927,826	+				-1.7
4,927,826	+				-0.9
4,927,829	-				-0.6
4,927,829	-				-1.1
4,927,855	+				-0.8
4,927,862	+				-1.8
4,927,870	-				-0.0
4,927,888	+				-0.2
4,927,888	+				-0.3
4,927,911	-		GFF4936	0.11	-0.6
4,927,937	-		GFF4936	0.13	-0.6
4,927,944	+		GFF4936	0.13	-1.4
4,927,948	+		GFF4936	0.13	-1.1
4,927,948	+		GFF4936	0.13	+1.5
4,927,962	+		GFF4936	0.14	-1.2
4,927,962	+		GFF4936	0.14	-1.9
4,927,962	+		GFF4936	0.14	+0.6
4,927,962	+		GFF4936	0.14	-1.8
4,927,962	+		GFF4936	0.14	+0.4
4,927,962	-		GFF4936	0.14	-0.3
4,927,970	-		GFF4936	0.15	-0.9
4,927,970	-		GFF4936	0.15	-1.4
4,927,970	-		GFF4936	0.15	-0.0
4,927,970	-		GFF4936	0.15	-0.8
4,927,970	-		GFF4936	0.15	-1.2
4,927,972	+		GFF4936	0.15	-1.2
4,928,023	+		GFF4936	0.19	-2.5
4,928,028	+		GFF4936	0.19	-0.8
4,928,028	-		GFF4936	0.19	-1.8
4,928,031	-		GFF4936	0.19	-0.7
4,928,067	-		GFF4936	0.22	-3.3
4,928,068	+		GFF4936	0.22	-0.1
4,928,097	-		GFF4936	0.24	-0.4
4,928,114	+		GFF4936	0.25	-1.0
4,928,140	+		GFF4936	0.27	+0.2
4,928,156	+		GFF4936	0.28	-0.4
4,928,156	+		GFF4936	0.28	-2.4
4,928,156	+		GFF4936	0.28	-1.6
4,928,160	+		GFF4936	0.28	-2.1
4,928,164	-		GFF4936	0.28	-2.0
4,928,164	-		GFF4936	0.28	-1.1
4,928,175	+		GFF4936	0.29	-1.2
4,928,177	+		GFF4936	0.29	+0.2
4,928,177	+		GFF4936	0.29	-1.8
4,928,177	+		GFF4936	0.29	-0.7
4,928,177	+		GFF4936	0.29	+0.1
4,928,177	+		GFF4936	0.29	-1.4
4,928,182	+		GFF4936	0.29	+0.8
4,928,182	+		GFF4936	0.29	+0.4
4,928,182	+		GFF4936	0.29	+0.1
4,928,182	+		GFF4936	0.29	-1.7
4,928,182	+		GFF4936	0.29	-0.6
4,928,185	-		GFF4936	0.30	-0.6
4,928,185	-		GFF4936	0.30	-1.9
4,928,185	-		GFF4936	0.30	+0.8
4,928,185	-		GFF4936	0.30	+0.2
4,928,190	-		GFF4936	0.30	-1.2
4,928,190	-		GFF4936	0.30	+0.1
4,928,210	+		GFF4936	0.31	+0.2
4,928,220	+		GFF4936	0.32	+0.0
4,928,228	-		GFF4936	0.33	-0.6
4,928,230	+		GFF4936	0.33	+0.5
4,928,230	+		GFF4936	0.33	-0.9
4,928,230	+		GFF4936	0.33	-1.9
4,928,230	+		GFF4936	0.33	-2.2
4,928,232	+		GFF4936	0.33	-0.1
4,928,238	-		GFF4936	0.33	-0.5
4,928,238	-		GFF4936	0.33	+0.0
4,928,240	-		GFF4936	0.33	-0.1
4,928,245	-		GFF4936	0.34	+0.0
4,928,260	-		GFF4936	0.35	+0.6
4,928,277	+		GFF4936	0.36	-0.3
4,928,280	-		GFF4936	0.36	-0.6
4,928,292	-		GFF4936	0.37	+0.1
4,928,294	+		GFF4936	0.37	-2.4
4,928,302	-		GFF4936	0.38	-1.4
4,928,307	-		GFF4936	0.38	-1.0
4,928,325	-		GFF4936	0.39	-0.1
4,928,330	-		GFF4936	0.39	-0.6
4,928,330	-		GFF4936	0.39	+0.5
4,928,340	+		GFF4936	0.40	-1.5
4,928,345	+		GFF4936	0.40	-0.5
4,928,345	+		GFF4936	0.40	-0.1
4,928,345	+		GFF4936	0.40	-2.4
4,928,345	+		GFF4936	0.40	+0.1
4,928,345	+		GFF4936	0.40	-0.4
4,928,345	+		GFF4936	0.40	-0.4
4,928,345	+		GFF4936	0.40	-0.4
4,928,345	+		GFF4936	0.40	-0.4
4,928,345	+		GFF4936	0.40	-0.9
4,928,348	-		GFF4936	0.41	-1.9
4,928,348	-		GFF4936	0.41	-0.6
4,928,350	+		GFF4936	0.41	+0.4
4,928,350	+		GFF4936	0.41	-2.5
4,928,350	+		GFF4936	0.41	-1.9
4,928,350	+		GFF4936	0.41	-0.4
4,928,350	+		GFF4936	0.41	-1.3
4,928,350	+		GFF4936	0.41	-1.2
4,928,350	+		GFF4936	0.41	-0.5
4,928,350	+		GFF4936	0.41	+0.3
4,928,350	+		GFF4936	0.41	-0.6
4,928,350	+		GFF4936	0.41	-0.1
4,928,350	+		GFF4936	0.41	-1.0
4,928,350	+		GFF4936	0.41	+0.6
4,928,350	+		GFF4936	0.41	-1.1
4,928,350	+		GFF4936	0.41	-0.6
4,928,350	+		GFF4936	0.41	-1.3
4,928,350	+		GFF4936	0.41	-0.2
4,928,350	+		GFF4936	0.41	-0.4
4,928,350	+		GFF4936	0.41	-0.3
4,928,353	-		GFF4936	0.41	+0.0
4,928,353	-		GFF4936	0.41	-1.0
4,928,353	-		GFF4936	0.41	-0.7
4,928,353	-		GFF4936	0.41	-1.7
4,928,353	-		GFF4936	0.41	+0.5
4,928,353	-		GFF4936	0.41	+0.3
4,928,353	-		GFF4936	0.41	-1.6
4,928,353	-		GFF4936	0.41	-0.2
4,928,353	-		GFF4936	0.41	-0.8
4,928,358	-		GFF4936	0.41	+0.7
4,928,358	-		GFF4936	0.41	+0.0
4,928,358	-		GFF4936	0.41	-0.1
4,928,358	-		GFF4936	0.41	-0.2
4,928,358	-		GFF4936	0.41	-1.4
4,928,358	-		GFF4936	0.41	-0.6
4,928,358	-		GFF4936	0.41	-0.5
4,928,358	-		GFF4936	0.41	-0.9
4,928,358	-		GFF4936	0.41	-0.6
4,928,358	-		GFF4936	0.41	-0.9
4,928,358	-		GFF4936	0.41	-0.7
4,928,358	-		GFF4936	0.41	-0.1
4,928,358	-		GFF4936	0.41	+0.7
4,928,358	-		GFF4936	0.41	-0.2
4,928,358	-		GFF4936	0.41	-0.2
4,928,358	-		GFF4936	0.41	-2.0
4,928,358	-		GFF4936	0.41	+0.5
4,928,358	-		GFF4936	0.41	-1.8
4,928,358	-		GFF4936	0.41	-0.5
4,928,377	+		GFF4936	0.43	-1.3
4,928,377	+		GFF4936	0.43	+0.1
4,928,377	+		GFF4936	0.43	-2.0
4,928,377	+		GFF4936	0.43	-1.5
4,928,377	+		GFF4936	0.43	-0.1
4,928,385	-		GFF4936	0.43	-0.4
4,928,385	-		GFF4936	0.43	-0.2
4,928,385	-		GFF4936	0.43	-0.4
4,928,385	-		GFF4936	0.43	-1.3
4,928,385	-		GFF4936	0.43	-1.0
4,928,386	-		GFF4936	0.43	-0.6
4,928,390	-		GFF4936	0.44	+0.9
4,928,391	-		GFF4936	0.44	+0.9
4,928,399	+		GFF4936	0.44	-1.2
4,928,417	+		GFF4936	0.45	+0.3
4,928,445	+		GFF4936	0.47	+0.3
4,928,445	+		GFF4936	0.47	-0.2
4,928,453	-		GFF4936	0.48	-1.9
4,928,453	-		GFF4936	0.48	-0.7
4,928,453	-		GFF4936	0.48	-0.1
4,928,453	-		GFF4936	0.48	-1.9
4,928,453	-		GFF4936	0.48	-1.8
4,928,453	-		GFF4936	0.48	+0.8
4,928,453	-		GFF4936	0.48	-1.1
4,928,453	-		GFF4936	0.48	-1.0
4,928,481	+		GFF4936	0.50	-1.2
4,928,481	+		GFF4936	0.50	-0.2
4,928,481	+		GFF4936	0.50	-1.5
4,928,487	-		GFF4936	0.50	-1.6
4,928,489	-		GFF4936	0.50	-0.9
4,928,489	-		GFF4936	0.50	-0.1
4,928,489	-		GFF4936	0.50	-1.6
4,928,489	-		GFF4936	0.50	-1.8
4,928,489	-		GFF4936	0.50	-2.7
4,928,489	-		GFF4936	0.50	-0.4
4,928,489	-		GFF4936	0.50	-0.3
4,928,548	+		GFF4936	0.54	+0.3
4,928,558	+		GFF4936	0.55	-0.9
4,928,568	+		GFF4936	0.56	-0.4
4,928,576	-		GFF4936	0.56	-0.1
4,928,576	-		GFF4936	0.56	-0.2
4,928,576	-		GFF4936	0.56	+0.1
4,928,587	-		GFF4936	0.57	-0.6
4,928,599	-		GFF4936	0.58	+1.0
4,928,652	+		GFF4936	0.61	+0.9
4,928,672	+		GFF4936	0.63	-1.3
4,928,672	+		GFF4936	0.63	-1.1
4,928,672	+		GFF4936	0.63	-0.0
4,928,679	+		GFF4936	0.63	-1.6
4,928,680	-		GFF4936	0.63	+1.4
4,928,680	-		GFF4936	0.63	-0.5
4,928,680	-		GFF4936	0.63	-0.9
4,928,685	+		GFF4936	0.64	-1.1
4,928,685	+		GFF4936	0.64	-0.0
4,928,687	+		GFF4936	0.64	-0.1
4,928,687	-		GFF4936	0.64	-3.0
4,928,701	+		GFF4936	0.65	-0.8
4,928,708	+		GFF4936	0.65	-0.9
4,928,708	+		GFF4936	0.65	-2.9
4,928,708	+		GFF4936	0.65	-1.5
4,928,708	+		GFF4936	0.65	-2.5
4,928,709	+		GFF4936	0.65	+0.8
4,928,715	-		GFF4936	0.66	-1.4
4,928,716	-		GFF4936	0.66	-1.8
4,928,716	-		GFF4936	0.66	+1.2
4,928,724	+		GFF4936	0.66	-3.4
4,928,724	+		GFF4936	0.66	-1.6
4,928,742	-		GFF4936	0.67	-1.6
4,928,744	-		GFF4936	0.68	-0.9
4,928,778	+		GFF4936	0.70	-0.3
4,928,781	-		GFF4936	0.70	-0.4
4,928,789	+		GFF4936	0.71	-1.2
4,928,797	-		GFF4936	0.71	-2.6
4,928,799	+		GFF4936	0.71	-0.2
4,928,809	+		GFF4936	0.72	+0.2
4,928,809	+		GFF4936	0.72	-1.4
4,928,809	+		GFF4936	0.72	-2.1
4,928,809	+		GFF4936	0.72	-1.2
4,928,809	+		GFF4936	0.72	+0.1
4,928,814	+		GFF4936	0.72	-0.9
4,928,817	-		GFF4936	0.73	+0.4
4,928,817	-		GFF4936	0.73	+0.5
4,928,828	+		GFF4936	0.73	-1.1
4,928,852	-		GFF4936	0.75	-2.0
4,928,896	+		GFF4936	0.78	-1.8
4,928,896	+		GFF4936	0.78	-1.8
4,928,904	+		GFF4936	0.79	-0.4
4,928,904	-		GFF4936	0.79	-0.6
4,928,912	-		GFF4936	0.79	-1.6
4,928,912	-		GFF4936	0.79	+0.1
4,928,912	-		GFF4936	0.79	-0.1
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4,929,162	+				+1.1
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4,929,162	+				-2.3
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4,929,170	-				-0.6
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4,929,170	-				-0.1
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4,929,172	+				-1.6
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4,929,196	-				-1.1
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4,929,196	-				+0.1
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4,929,285	+				-1.8
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