Strain Fitness in Sphingobium sp. HT1-2 around GFF4919

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,911,412	-		GFF4918	0.40	-0.7
4,911,418	-		GFF4918	0.40	-1.6
4,911,429	+		GFF4918	0.41	+0.2
4,911,469	-		GFF4918	0.44	-1.5
4,911,469	-		GFF4918	0.44	-0.1
4,911,479	+		GFF4918	0.44	-1.1
4,911,496	-		GFF4918	0.46	-1.7
4,911,498	+		GFF4918	0.46	+0.2
4,911,519	+		GFF4918	0.47	+0.1
4,911,531	+		GFF4918	0.48	+0.8
4,911,532	-		GFF4918	0.48	-0.8
4,911,539	-		GFF4918	0.49	-0.2
4,911,545	+		GFF4918	0.49	+0.3
4,911,545	+		GFF4918	0.49	-0.4
4,911,550	+		GFF4918	0.49	-2.0
4,911,550	+		GFF4918	0.49	+0.3
4,911,550	+		GFF4918	0.49	-0.5
4,911,550	+		GFF4918	0.49	-0.8
4,911,550	+		GFF4918	0.49	-0.3
4,911,550	+		GFF4918	0.49	-0.7
4,911,550	+		GFF4918	0.49	-0.1
4,911,550	+		GFF4918	0.49	-1.5
4,911,553	-		GFF4918	0.50	-0.1
4,911,553	-		GFF4918	0.50	-0.9
4,911,553	-		GFF4918	0.50	-1.4
4,911,555	+		GFF4918	0.50	-0.5
4,911,555	+		GFF4918	0.50	+0.3
4,911,555	+		GFF4918	0.50	-1.1
4,911,558	-		GFF4918	0.50	+0.3
4,911,558	-		GFF4918	0.50	-1.5
4,911,558	-		GFF4918	0.50	-0.6
4,911,558	-		GFF4918	0.50	-0.5
4,911,579	+		GFF4918	0.51	-1.2
4,911,597	+		GFF4918	0.53	-0.7
4,911,600	-		GFF4918	0.53	+0.2
4,911,613	+		GFF4918	0.54	-1.1
4,911,637	+		GFF4918	0.55	-0.4
4,911,637	+		GFF4918	0.55	-0.7
4,911,640	-		GFF4918	0.56	-1.5
4,911,645	-		GFF4918	0.56	-1.2
4,911,647	+		GFF4918	0.56	-0.8
4,911,649	+		GFF4918	0.56	-1.9
4,911,651	+		GFF4918	0.56	+0.2
4,911,651	+		GFF4918	0.56	-0.4
4,911,651	+		GFF4918	0.56	-1.4
4,911,651	+		GFF4918	0.56	-1.0
4,911,651	+		GFF4918	0.56	-1.3
4,911,651	+		GFF4918	0.56	+0.1
4,911,651	+		GFF4918	0.56	-2.2
4,911,656	+		GFF4918	0.57	-1.3
4,911,659	+		GFF4918	0.57	-1.2
4,911,659	+		GFF4918	0.57	-2.3
4,911,659	-		GFF4918	0.57	+0.6
4,911,659	-		GFF4918	0.57	-0.1
4,911,659	-		GFF4918	0.57	-0.5
4,911,667	-		GFF4918	0.57	-0.9
4,911,667	-		GFF4918	0.57	+0.5
4,911,674	+		GFF4918	0.58	-1.2
4,911,682	-		GFF4918	0.58	-1.4
4,911,711	+		GFF4918	0.60	+0.2
4,911,712	-		GFF4918	0.60	-1.8
4,911,714	-		GFF4918	0.61	-2.2
4,911,714	-		GFF4918	0.61	-0.7
4,911,729	-		GFF4918	0.62	-0.1
4,911,729	-		GFF4918	0.62	-0.0
4,911,747	+		GFF4918	0.63	-0.7
4,911,755	-		GFF4918	0.63	-1.4
4,911,791	-		GFF4918	0.66	-1.3
4,911,791	-		GFF4918	0.66	-0.7
4,911,791	-		GFF4918	0.66	+0.2
4,911,795	+		GFF4918	0.66	+0.5
4,911,800	+		GFF4918	0.67	-0.1
4,911,827	+		GFF4918	0.68	-1.9
4,911,831	+		GFF4918	0.69	+0.5
4,911,856	-		GFF4918	0.70	-1.1
4,911,883	-		GFF4918	0.72	-1.0
4,911,889	+		GFF4918	0.73	-0.7
4,911,889	+		GFF4918	0.73	-0.5
4,911,909	+		GFF4918	0.74	+0.1
4,911,911	+		GFF4918	0.74	-2.7
4,911,916	+		GFF4918	0.75	-2.2
4,911,917	-		GFF4918	0.75	-0.3
4,911,922	-		GFF4918	0.75	-1.9
4,911,937	-		GFF4918	0.76	-0.3
4,911,975	+		GFF4918	0.79	-0.3
4,911,980	+		GFF4918	0.79	-1.3
4,911,988	+		GFF4918	0.79	-0.1
4,911,988	-		GFF4918	0.79	-0.1
4,911,992	+		GFF4918	0.80	+0.4
4,912,000	-		GFF4918	0.80	-1.6
4,912,000	-		GFF4918	0.80	-0.8
4,912,001	-		GFF4918	0.80	-1.7
4,912,011	-		GFF4918	0.81	+0.4
4,912,022	+		GFF4918	0.82	+1.2
4,912,030	+		GFF4918	0.82	-0.2
4,912,048	+		GFF4918	0.84	-1.2
4,912,055	-		GFF4918	0.84	-0.9
4,912,073	+		GFF4918	0.85	-0.1
4,912,086	-		GFF4918	0.86	-0.3
4,912,136	-		GFF4918	0.90	-2.3
4,912,137	-		GFF4918	0.90	-0.1
4,912,177	-				+0.4
4,912,193	-				-0.2
4,912,234	+				-1.5
4,912,234	+				-2.3
4,912,270	+				+0.8
4,912,278	-				-2.5
4,912,278	-				-1.0
4,912,284	+				-1.1
4,912,300	-				-2.3
4,912,328	+				-1.1
4,912,330	-				-1.0
4,912,362	-				+0.2
4,912,381	+				-1.5
4,912,381	+				-0.4
4,912,386	+				-1.8
4,912,386	+				+0.1
4,912,386	+				-0.7
4,912,386	+				-0.4
4,912,386	+				-0.6
4,912,386	+				-0.8
4,912,389	-				-0.2
4,912,389	-				-0.7
4,912,389	-				-2.1
4,912,394	-				-0.8
4,912,394	-				-1.1
4,912,394	-				-1.9
4,912,394	-				+0.7
4,912,394	-				+0.4
4,912,410	-				-0.9
4,912,424	-				-1.5
4,912,449	+		GFF4919	0.12	-1.9
4,912,449	+		GFF4919	0.12	-0.0
4,912,452	-		GFF4919	0.12	-0.1
4,912,458	+		GFF4919	0.13	-1.8
4,912,470	+		GFF4919	0.16	-0.9
4,912,480	+		GFF4919	0.17	-1.9
4,912,495	-		GFF4919	0.20	-0.9
4,912,495	-		GFF4919	0.20	+1.3
4,912,583	+		GFF4919	0.36	-1.2
4,912,587	-		GFF4919	0.36	-1.3
4,912,594	+		GFF4919	0.38	-0.5
4,912,614	+		GFF4919	0.41	-0.7
4,912,630	-		GFF4919	0.44	+0.8
4,912,630	-		GFF4919	0.44	+0.7
4,912,654	+		GFF4919	0.48	-1.5
4,912,664	+		GFF4919	0.50	-0.1
4,912,664	+		GFF4919	0.50	-0.4
4,912,666	+		GFF4919	0.50	-0.5
4,912,669	+		GFF4919	0.51	+1.0
4,912,669	+		GFF4919	0.51	+0.6
4,912,672	-		GFF4919	0.52	-2.3
4,912,674	+		GFF4919	0.52	-1.5
4,912,674	+		GFF4919	0.52	-1.5
4,912,674	+		GFF4919	0.52	-0.0
4,912,677	-		GFF4919	0.52	-0.9
4,912,678	-		GFF4919	0.53	-0.2
4,912,682	-		GFF4919	0.53	-1.0
4,912,682	-		GFF4919	0.53	+0.3
4,912,682	-		GFF4919	0.53	+0.3
4,912,758	-		GFF4919	0.67	-0.2
4,912,760	-		GFF4919	0.67	-1.3
4,912,765	+		GFF4919	0.68	-0.0
4,912,773	-		GFF4919	0.70	-0.7
4,912,815	+		GFF4919	0.77	-0.4
4,912,830	+		GFF4919	0.80	-0.7
4,912,849	-		GFF4919	0.83	-1.5
4,912,855	+		GFF4919	0.84	+0.7
4,912,863	-		GFF4919	0.86	-1.8
4,912,874	-		GFF4919	0.88	-2.5
4,912,874	-		GFF4919	0.88	+1.1
4,912,881	+		GFF4919	0.89	-2.5
4,912,889	+				-1.0
4,912,889	+				-1.5
4,912,902	+				-2.0
4,912,944	+				-0.0
4,912,944	+				-0.8
4,912,945	+				-1.5
4,912,945	+				-1.0
4,912,945	+				-0.7
4,912,945	+				-0.2
4,912,945	+				-0.3
4,912,952	-				-0.4
4,912,952	-				+0.0
4,912,953	-				+0.2
4,912,953	-				-1.4
4,912,953	-				+0.1
4,912,953	-				-0.2
4,912,953	-				+0.0
4,912,953	-				+0.8
4,912,954	+				+0.4
4,912,962	-				-0.1
4,912,962	-				+0.3
4,912,963	+				-2.7
4,912,963	+				-1.1
4,912,963	+				-1.9
4,912,963	+				-1.1
4,912,963	+				+0.3
4,912,963	+				+0.2
4,912,963	+				-1.9
4,912,963	+				-1.5
4,912,965	+				-1.1
4,912,968	+				-0.0
4,912,970	+				+0.0
4,912,971	-				-1.1
4,912,971	-				-0.1
4,912,971	-				-0.2
4,912,971	-				-0.1
4,912,973	+				-0.7
4,912,973	-				-1.0
4,912,976	-				-0.4
4,912,976	-				-0.5
4,912,976	-				+0.4
4,912,996	-				+0.0
4,913,001	+				-1.7
4,913,009	-				-1.9
4,913,010	+				-0.4
4,913,010	+				-0.1
4,913,028	+				+0.4
4,913,036	-				-0.0
4,913,038	+				-1.9
4,913,039	-				-0.6
4,913,041	-				-1.1
4,913,045	+				-0.7
4,913,096	+				-1.7
4,913,104	-				-1.5
4,913,104	-				-0.7
4,913,119	+				-1.0
4,913,124	+		GFF4920	0.11	+0.8
4,913,126	-		GFF4920	0.11	-0.6
4,913,138	+		GFF4920	0.14	-0.3
4,913,146	-		GFF4920	0.15	-2.7
4,913,146	-		GFF4920	0.15	-0.1
4,913,153	+		GFF4920	0.17	-2.6
4,913,163	+		GFF4920	0.19	+0.4
4,913,171	-		GFF4920	0.20	+0.2
4,913,172	+		GFF4920	0.20	+0.3
4,913,172	+		GFF4920	0.20	-0.8
4,913,172	+		GFF4920	0.20	-0.5
4,913,172	+		GFF4920	0.20	-1.4
4,913,172	+		GFF4920	0.20	+0.4
4,913,180	-		GFF4920	0.22	-1.1
4,913,180	-		GFF4920	0.22	-0.8
4,913,224	+		GFF4920	0.30	+0.2
4,913,233	+		GFF4920	0.32	-1.2
4,913,234	+		GFF4920	0.32	-0.6
4,913,239	-		GFF4920	0.33	-0.4
4,913,265	+		GFF4920	0.38	+0.0
4,913,287	+		GFF4920	0.43	+0.2
4,913,296	+		GFF4920	0.44	-2.0
4,913,296	+		GFF4920	0.44	-0.7
4,913,296	+		GFF4920	0.44	-0.2
4,913,304	-		GFF4920	0.46	-0.0
4,913,304	-		GFF4920	0.46	-1.0
4,913,304	-		GFF4920	0.46	-1.0
4,913,328	+		GFF4920	0.51	-0.1
4,913,329	+		GFF4920	0.51	+0.2
4,913,334	+		GFF4920	0.52	+0.1
4,913,334	+		GFF4920	0.52	-0.7
4,913,335	+		GFF4920	0.52	-0.6
4,913,335	+		GFF4920	0.52	-1.5
4,913,335	+		GFF4920	0.52	-0.7
4,913,337	-		GFF4920	0.52	-1.2
4,913,342	-		GFF4920	0.53	-0.9
4,913,342	-		GFF4920	0.53	+0.6
4,913,342	-		GFF4920	0.53	-0.2
4,913,342	-		GFF4920	0.53	-0.5
4,913,342	-		GFF4920	0.53	-0.1
4,913,342	-		GFF4920	0.53	-1.8
4,913,343	-		GFF4920	0.54	-1.8
4,913,343	-		GFF4920	0.54	-0.1
4,913,375	-		GFF4920	0.60	-1.7
4,913,390	+		GFF4920	0.63	-0.0
4,913,391	+		GFF4920	0.63	-1.4
4,913,398	-		GFF4920	0.64	+0.3
4,913,399	-		GFF4920	0.65	-0.8
4,913,401	-		GFF4920	0.65	-0.7
4,913,401	-		GFF4920	0.65	-2.6
4,913,437	-		GFF4920	0.72	-0.3
4,913,447	+		GFF4920	0.74	+0.4
4,913,457	+		GFF4920	0.76	+0.3
4,913,473	-		GFF4920	0.79	+0.1
4,913,481	+		GFF4920	0.81	-1.6
4,913,487	+		GFF4920	0.82	-0.4
4,913,490	-		GFF4920	0.82	+0.0
4,913,500	-		GFF4920	0.84	-1.8
4,913,527	+		GFF4920	0.89	-0.9
4,913,534	+				-2.6
4,913,535	-				+0.6
4,913,535	-				-0.8
4,913,540	-				-1.7
4,913,542	-				-0.0
4,913,567	+				-1.7
4,913,573	+				-1.5
4,913,581	+				+0.1
4,913,609	+				+0.1
4,913,655	-				-0.6
4,913,679	+				-0.2
4,913,684	+				-1.7
4,913,684	+				-0.8
4,913,692	-				-0.9
4,913,705	+				-0.9
4,913,715	-				-2.4
4,913,720	+				-0.1
4,913,733	-				-2.0
4,913,740	-				-1.7
4,913,752	+				+0.5
4,913,752	+				-1.8
4,913,752	+				+0.1
4,913,752	+				-0.4
4,913,752	+				-0.3
4,913,752	+				-0.2
4,913,752	+				-2.1
4,913,754	-				-0.1
4,913,754	-				-0.4
4,913,760	-				+0.1
4,913,760	-				-0.7
4,913,775	+		GFF4921	0.11	+0.2
4,913,779	-		GFF4921	0.11	-0.3
4,913,792	+		GFF4921	0.13	-1.1
4,913,793	+		GFF4921	0.13	-0.7
4,913,798	+		GFF4921	0.13	+0.8
4,913,808	+		GFF4921	0.15	-2.0
4,913,836	-		GFF4921	0.18	-0.9
4,913,868	-		GFF4921	0.22	-0.8
4,913,870	+		GFF4921	0.22	-1.4
4,913,870	+		GFF4921	0.22	-2.6
4,913,873	-		GFF4921	0.23	-1.8
4,913,876	+		GFF4921	0.23	-1.4
4,913,884	-		GFF4921	0.24	-0.3
4,913,888	+		GFF4921	0.24	-1.4
4,913,888	+		GFF4921	0.24	-0.2
4,913,902	+		GFF4921	0.26	-2.6
4,913,910	-		GFF4921	0.27	-0.4
4,913,910	-		GFF4921	0.27	-0.8
4,913,911	-		GFF4921	0.27	-1.8
4,913,914	-		GFF4921	0.28	+1.2
4,913,917	-		GFF4921	0.28	+0.1