Strain Fitness in Sphingobium sp. HT1-2 around GFF4918

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,909,835	-		GFF4916	0.86	-0.1
4,909,835	-		GFF4916	0.86	-0.1
4,909,835	-		GFF4916	0.86	-1.7
4,909,839	+		GFF4916	0.87	-2.0
4,909,847	-		GFF4916	0.87	+1.6
4,909,849	+		GFF4916	0.87	-0.8
4,909,849	+		GFF4916	0.87	-0.2
4,909,900	+		GFF4916	0.90	-2.0
4,909,908	-				-1.1
4,909,927	+				-1.0
4,909,936	+				-0.5
4,909,941	-				-1.7
4,909,946	-				-0.8
4,909,946	-				+0.4
4,909,959	-				+0.6
4,909,961	+				-1.7
4,909,969	-				-3.0
4,909,969	-				-0.2
4,909,971	-				+0.1
4,909,988	+				+0.2
4,909,991	+				-1.8
4,909,996	-				-0.1
4,909,997	-				-1.1
4,909,999	+				+0.2
4,910,012	-				-0.9
4,910,022	+				-1.7
4,910,022	+				-0.8
4,910,022	+				-0.7
4,910,022	+				+0.4
4,910,022	+				-0.0
4,910,022	+				+0.6
4,910,022	+				-2.3
4,910,022	+				-1.8
4,910,022	+				-0.4
4,910,022	+				-0.8
4,910,022	+				-1.7
4,910,022	+				-1.4
4,910,022	+				+0.2
4,910,023	-				-0.5
4,910,027	+				-0.2
4,910,030	-				-0.0
4,910,030	-				-0.7
4,910,030	-				+0.0
4,910,030	-				-0.4
4,910,030	-				-0.4
4,910,030	-				+0.5
4,910,030	-				+0.9
4,910,030	-				-2.5
4,910,030	-				-0.8
4,910,030	-				-1.9
4,910,030	-				+0.8
4,910,030	-				-0.8
4,910,030	-				+0.2
4,910,040	-				-0.8
4,910,079	-				-1.8
4,910,083	-				-2.1
4,910,083	-				-0.3
4,910,085	+				-0.8
4,910,085	+				-0.7
4,910,088	+				+0.4
4,910,096	-				+1.0
4,910,096	-				-1.7
4,910,103	+				-1.2
4,910,103	+				-1.9
4,910,103	+				-1.3
4,910,103	+				-0.9
4,910,111	-				-0.9
4,910,111	-				+0.1
4,910,111	-				+1.0
4,910,111	-				-1.0
4,910,111	-				-0.7
4,910,111	-				+0.1
4,910,111	-				-1.2
4,910,111	-				-1.3
4,910,158	+				-1.3
4,910,166	-				-1.7
4,910,173	+				-0.1
4,910,173	+				-1.0
4,910,173	+				+0.4
4,910,173	+				-0.1
4,910,173	+				-2.2
4,910,178	+				-0.9
4,910,178	+				-0.9
4,910,178	+				-1.7
4,910,178	+				-2.5
4,910,181	-		GFF4917	0.10	-0.2
4,910,181	-		GFF4917	0.10	-0.1
4,910,181	-		GFF4917	0.10	-1.0
4,910,181	-		GFF4917	0.10	-0.8
4,910,183	+		GFF4917	0.11	-0.9
4,910,183	+		GFF4917	0.11	-0.3
4,910,186	-		GFF4917	0.11	-2.1
4,910,186	-		GFF4917	0.11	-0.6
4,910,186	-		GFF4917	0.11	-1.1
4,910,186	-		GFF4917	0.11	-0.4
4,910,186	-		GFF4917	0.11	-0.6
4,910,186	-		GFF4917	0.11	-0.2
4,910,188	+		GFF4917	0.11	+0.3
4,910,188	+		GFF4917	0.11	-0.0
4,910,188	+		GFF4917	0.11	-0.6
4,910,191	-		GFF4917	0.12	-2.0
4,910,191	-		GFF4917	0.12	-0.1
4,910,191	-		GFF4917	0.12	+0.2
4,910,191	-		GFF4917	0.12	-1.7
4,910,191	-		GFF4917	0.12	+0.3
4,910,191	-		GFF4917	0.12	+0.1
4,910,191	-		GFF4917	0.12	-0.3
4,910,191	-		GFF4917	0.12	-0.8
4,910,191	-		GFF4917	0.12	+0.8
4,910,191	-		GFF4917	0.12	-0.3
4,910,196	-		GFF4917	0.12	-1.2
4,910,196	-		GFF4917	0.12	-0.9
4,910,199	-		GFF4917	0.13	+0.1
4,910,201	+		GFF4917	0.13	-0.8
4,910,204	-		GFF4917	0.13	-1.2
4,910,221	+		GFF4917	0.16	-2.2
4,910,229	-		GFF4917	0.17	+1.1
4,910,239	+		GFF4917	0.18	-0.2
4,910,239	+		GFF4917	0.18	+0.3
4,910,271	+		GFF4917	0.23	-0.7
4,910,271	+		GFF4917	0.23	+0.3
4,910,271	+		GFF4917	0.23	-0.1
4,910,275	-		GFF4917	0.23	-1.6
4,910,281	+		GFF4917	0.24	-0.8
4,910,286	-		GFF4917	0.25	-0.6
4,910,291	+		GFF4917	0.25	-0.1
4,910,299	-		GFF4917	0.26	-0.8
4,910,299	-		GFF4917	0.26	-2.8
4,910,300	-		GFF4917	0.27	-1.8
4,910,310	-		GFF4917	0.28	-1.7
4,910,313	+		GFF4917	0.28	-0.2
4,910,316	-		GFF4917	0.29	-1.2
4,910,328	-		GFF4917	0.30	-0.5
4,910,332	-		GFF4917	0.31	-1.4
4,910,372	-		GFF4917	0.36	-0.7
4,910,420	-		GFF4917	0.43	-0.7
4,910,421	-		GFF4917	0.43	-0.9
4,910,426	-		GFF4917	0.44	-0.2
4,910,431	+		GFF4917	0.44	-0.5
4,910,458	+		GFF4917	0.48	-0.7
4,910,463	+		GFF4917	0.49	-0.4
4,910,463	+		GFF4917	0.49	+0.7
4,910,471	-		GFF4917	0.50	-1.3
4,910,471	-		GFF4917	0.50	-1.1
4,910,475	+		GFF4917	0.50	+0.2
4,910,478	-		GFF4917	0.51	-0.1
4,910,481	-		GFF4917	0.51	+0.9
4,910,481	-		GFF4917	0.51	-2.2
4,910,500	+		GFF4917	0.54	+0.4
4,910,513	+		GFF4917	0.56	-0.9
4,910,513	+		GFF4917	0.56	+0.6
4,910,520	+		GFF4917	0.57	-2.5
4,910,521	-		GFF4917	0.57	+0.0
4,910,521	-		GFF4917	0.57	-0.8
4,910,539	-		GFF4917	0.59	-3.1
4,910,544	+		GFF4917	0.60	-0.8
4,910,544	+		GFF4917	0.60	-2.2
4,910,552	-		GFF4917	0.61	-0.3
4,910,571	-		GFF4917	0.64	-1.1
4,910,806	-				+0.1
4,910,814	+				+0.7
4,910,816	+				-0.1
4,910,816	+				-0.3
4,910,822	-				+0.9
4,910,822	-				-2.4
4,910,822	-				-0.4
4,910,822	-				+0.1
4,910,822	-				-0.9
4,910,822	-				-0.7
4,910,822	-				-2.1
4,910,822	-				-2.3
4,910,822	-				+0.5
4,910,824	-				+0.2
4,910,824	-				-2.5
4,910,832	+				-1.1
4,910,832	+				-0.5
4,910,833	-				-0.0
4,910,840	-				-0.3
4,910,851	+				+0.5
4,910,854	-				+0.3
4,910,871	-				-0.1
4,910,911	+				-1.1
4,910,941	+				-0.8
4,910,959	-				+0.1
4,910,959	-				-1.9
4,910,972	+				+0.1
4,910,980	-		GFF4918	0.10	-0.9
4,911,029	+		GFF4918	0.13	-2.3
4,911,032	-		GFF4918	0.14	-1.6
4,911,034	+		GFF4918	0.14	-0.7
4,911,034	+		GFF4918	0.14	-0.7
4,911,034	+		GFF4918	0.14	-2.3
4,911,034	+		GFF4918	0.14	-0.3
4,911,034	+		GFF4918	0.14	-0.7
4,911,037	-		GFF4918	0.14	-2.5
4,911,037	-		GFF4918	0.14	-1.4
4,911,039	+		GFF4918	0.14	-1.9
4,911,039	+		GFF4918	0.14	+0.2
4,911,042	-		GFF4918	0.14	+0.2
4,911,057	+		GFF4918	0.15	-0.1
4,911,057	+		GFF4918	0.15	-2.8
4,911,057	+		GFF4918	0.15	+0.8
4,911,057	+		GFF4918	0.15	-1.0
4,911,057	+		GFF4918	0.15	-1.3
4,911,057	+		GFF4918	0.15	-0.7
4,911,057	+		GFF4918	0.15	-1.0
4,911,065	-		GFF4918	0.16	-0.6
4,911,065	-		GFF4918	0.16	-0.8
4,911,065	-		GFF4918	0.16	+0.4
4,911,065	-		GFF4918	0.16	-0.7
4,911,065	-		GFF4918	0.16	-2.0
4,911,096	+		GFF4918	0.18	+0.5
4,911,101	+		GFF4918	0.18	-0.7
4,911,101	+		GFF4918	0.18	-0.7
4,911,101	+		GFF4918	0.18	-2.0
4,911,101	+		GFF4918	0.18	+0.1
4,911,101	+		GFF4918	0.18	-1.3
4,911,101	+		GFF4918	0.18	-0.9
4,911,101	+		GFF4918	0.18	+0.3
4,911,101	+		GFF4918	0.18	+0.1
4,911,101	+		GFF4918	0.18	+0.6
4,911,101	+		GFF4918	0.18	-2.1
4,911,101	+		GFF4918	0.18	-1.7
4,911,101	+		GFF4918	0.18	+0.3
4,911,101	+		GFF4918	0.18	-0.7
4,911,101	+		GFF4918	0.18	+0.6
4,911,104	-		GFF4918	0.19	-0.1
4,911,104	-		GFF4918	0.19	-0.4
4,911,104	-		GFF4918	0.19	+0.6
4,911,106	+		GFF4918	0.19	+0.2
4,911,106	+		GFF4918	0.19	-1.5
4,911,106	+		GFF4918	0.19	-0.2
4,911,107	+		GFF4918	0.19	+0.7
4,911,108	+		GFF4918	0.19	-1.7
4,911,109	-		GFF4918	0.19	-1.4
4,911,109	-		GFF4918	0.19	-1.8
4,911,109	-		GFF4918	0.19	-0.7
4,911,109	-		GFF4918	0.19	-0.4
4,911,109	-		GFF4918	0.19	-2.1
4,911,109	-		GFF4918	0.19	+0.5
4,911,109	-		GFF4918	0.19	+0.1
4,911,109	-		GFF4918	0.19	-0.8
4,911,109	-		GFF4918	0.19	-0.9
4,911,109	-		GFF4918	0.19	-2.0
4,911,109	-		GFF4918	0.19	-2.0
4,911,109	-		GFF4918	0.19	-1.2
4,911,109	-		GFF4918	0.19	-1.0
4,911,110	-		GFF4918	0.19	-0.2
4,911,112	+		GFF4918	0.19	-2.2
4,911,112	+		GFF4918	0.19	-0.5
4,911,112	+		GFF4918	0.19	-0.2
4,911,112	+		GFF4918	0.19	+0.7
4,911,112	+		GFF4918	0.19	+0.6
4,911,114	-		GFF4918	0.19	+0.3
4,911,114	-		GFF4918	0.19	-1.3
4,911,114	-		GFF4918	0.19	+0.4
4,911,120	-		GFF4918	0.20	-0.8
4,911,120	-		GFF4918	0.20	-1.2
4,911,120	-		GFF4918	0.20	-0.3
4,911,120	-		GFF4918	0.20	-0.7
4,911,127	-		GFF4918	0.20	-2.0
4,911,150	-		GFF4918	0.22	-0.9
4,911,170	+		GFF4918	0.23	+0.3
4,911,170	+		GFF4918	0.23	-0.1
4,911,170	+		GFF4918	0.23	-0.3
4,911,171	+		GFF4918	0.23	-1.5
4,911,178	-		GFF4918	0.24	-0.7
4,911,179	-		GFF4918	0.24	-0.2
4,911,224	+		GFF4918	0.27	-0.5
4,911,229	+		GFF4918	0.27	-0.5
4,911,232	-		GFF4918	0.27	-1.6
4,911,232	-		GFF4918	0.27	-1.5
4,911,232	-		GFF4918	0.27	-0.1
4,911,232	-		GFF4918	0.27	-0.4
4,911,232	-		GFF4918	0.27	+0.3
4,911,260	+		GFF4918	0.29	-0.2
4,911,266	+		GFF4918	0.30	-0.3
4,911,274	-		GFF4918	0.30	-1.5
4,911,274	-		GFF4918	0.30	+0.3
4,911,284	-		GFF4918	0.31	-1.7
4,911,300	+		GFF4918	0.32	-2.6
4,911,312	+		GFF4918	0.33	-0.9
4,911,317	+		GFF4918	0.33	-1.3
4,911,317	+		GFF4918	0.33	-0.7
4,911,317	+		GFF4918	0.33	-0.1
4,911,319	-		GFF4918	0.33	-0.7
4,911,325	-		GFF4918	0.34	-1.9
4,911,325	-		GFF4918	0.34	-1.1
4,911,327	-		GFF4918	0.34	-0.4
4,911,339	-		GFF4918	0.35	+0.3
4,911,369	+		GFF4918	0.37	+0.2
4,911,370	+		GFF4918	0.37	-1.9
4,911,377	-		GFF4918	0.37	-0.3
4,911,412	-		GFF4918	0.40	-0.7
4,911,418	-		GFF4918	0.40	-1.6
4,911,429	+		GFF4918	0.41	+0.2
4,911,469	-		GFF4918	0.44	-1.5
4,911,469	-		GFF4918	0.44	-0.1
4,911,479	+		GFF4918	0.44	-1.1
4,911,496	-		GFF4918	0.46	-1.7
4,911,498	+		GFF4918	0.46	+0.2
4,911,519	+		GFF4918	0.47	+0.1
4,911,531	+		GFF4918	0.48	+0.8
4,911,532	-		GFF4918	0.48	-0.8
4,911,539	-		GFF4918	0.49	-0.2
4,911,545	+		GFF4918	0.49	+0.3
4,911,545	+		GFF4918	0.49	-0.4
4,911,550	+		GFF4918	0.49	-2.0
4,911,550	+		GFF4918	0.49	+0.3
4,911,550	+		GFF4918	0.49	-0.5
4,911,550	+		GFF4918	0.49	-0.8
4,911,550	+		GFF4918	0.49	-0.3
4,911,550	+		GFF4918	0.49	-0.7
4,911,550	+		GFF4918	0.49	-0.1
4,911,550	+		GFF4918	0.49	-1.5
4,911,553	-		GFF4918	0.50	-0.1
4,911,553	-		GFF4918	0.50	-0.9
4,911,553	-		GFF4918	0.50	-1.4
4,911,555	+		GFF4918	0.50	-0.5
4,911,555	+		GFF4918	0.50	+0.3
4,911,555	+		GFF4918	0.50	-1.1
4,911,558	-		GFF4918	0.50	+0.3
4,911,558	-		GFF4918	0.50	-1.5
4,911,558	-		GFF4918	0.50	-0.6
4,911,558	-		GFF4918	0.50	-0.5
4,911,579	+		GFF4918	0.51	-1.2
4,911,597	+		GFF4918	0.53	-0.7
4,911,600	-		GFF4918	0.53	+0.2
4,911,613	+		GFF4918	0.54	-1.1
4,911,637	+		GFF4918	0.55	-0.4
4,911,637	+		GFF4918	0.55	-0.7
4,911,640	-		GFF4918	0.56	-1.5
4,911,645	-		GFF4918	0.56	-1.2
4,911,647	+		GFF4918	0.56	-0.8
4,911,649	+		GFF4918	0.56	-1.9
4,911,651	+		GFF4918	0.56	+0.2
4,911,651	+		GFF4918	0.56	-0.4
4,911,651	+		GFF4918	0.56	-1.4
4,911,651	+		GFF4918	0.56	-1.0
4,911,651	+		GFF4918	0.56	-1.3
4,911,651	+		GFF4918	0.56	+0.1
4,911,651	+		GFF4918	0.56	-2.2
4,911,656	+		GFF4918	0.57	-1.3
4,911,659	+		GFF4918	0.57	-1.2
4,911,659	+		GFF4918	0.57	-2.3
4,911,659	-		GFF4918	0.57	+0.6
4,911,659	-		GFF4918	0.57	-0.1
4,911,659	-		GFF4918	0.57	-0.5
4,911,667	-		GFF4918	0.57	-0.9
4,911,667	-		GFF4918	0.57	+0.5
4,911,674	+		GFF4918	0.58	-1.2
4,911,682	-		GFF4918	0.58	-1.4
4,911,711	+		GFF4918	0.60	+0.2
4,911,712	-		GFF4918	0.60	-1.8
4,911,714	-		GFF4918	0.61	-2.2
4,911,714	-		GFF4918	0.61	-0.7
4,911,729	-		GFF4918	0.62	-0.1
4,911,729	-		GFF4918	0.62	-0.0
4,911,747	+		GFF4918	0.63	-0.7
4,911,755	-		GFF4918	0.63	-1.4
4,911,791	-		GFF4918	0.66	-1.3
4,911,791	-		GFF4918	0.66	-0.7
4,911,791	-		GFF4918	0.66	+0.2
4,911,795	+		GFF4918	0.66	+0.5
4,911,800	+		GFF4918	0.67	-0.1
4,911,827	+		GFF4918	0.68	-1.9
4,911,831	+		GFF4918	0.69	+0.5
4,911,856	-		GFF4918	0.70	-1.1
4,911,883	-		GFF4918	0.72	-1.0
4,911,889	+		GFF4918	0.73	-0.7
4,911,889	+		GFF4918	0.73	-0.5
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4,912,234	+				-2.3
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4,912,389	-				-2.1
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4,912,394	-				+0.4
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4,912,424	-				-1.5
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4,912,889	+				-1.5
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4,912,945	+				-1.5
4,912,945	+				-1.0
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4,912,945	+				-0.2
4,912,945	+				-0.3
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4,912,952	-				+0.0
4,912,953	-				+0.2
4,912,953	-				-1.4
4,912,953	-				+0.1
4,912,953	-				-0.2
4,912,953	-				+0.0
4,912,953	-				+0.8
4,912,954	+				+0.4
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4,912,962	-				+0.3
4,912,963	+				-2.7
4,912,963	+				-1.1
4,912,963	+				-1.9
4,912,963	+				-1.1
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4,912,963	+				+0.2
4,912,963	+				-1.9
4,912,963	+				-1.5
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4,912,970	+				+0.0
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4,912,971	-				-0.1
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4,912,976	-				+0.4
4,912,996	-				+0.0
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4,913,010	+				-0.1
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4,913,096	+				-1.7
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4,913,104	-				-0.7
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