Strain Fitness in Sphingobium sp. HT1-2 around GFF4792

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,786,358	-		GFF4791	0.35	-1.3
4,786,361	-		GFF4791	0.35	-2.5
4,786,363	+		GFF4791	0.35	-1.4
4,786,371	-		GFF4791	0.36	-0.2
4,786,371	-		GFF4791	0.36	-1.0
4,786,371	-		GFF4791	0.36	-1.1
4,786,375	+		GFF4791	0.36	-0.2
4,786,382	+		GFF4791	0.37	-0.9
4,786,383	-		GFF4791	0.37	-0.9
4,786,383	-		GFF4791	0.37	-1.6
4,786,383	-		GFF4791	0.37	-1.7
4,786,390	-		GFF4791	0.37	-1.1
4,786,395	-		GFF4791	0.38	-0.4
4,786,427	-		GFF4791	0.40	-0.7
4,786,470	+		GFF4791	0.43	+1.1
4,786,480	-		GFF4791	0.43	-1.5
4,786,486	-		GFF4791	0.44	+0.3
4,786,489	-		GFF4791	0.44	-1.0
4,786,496	+		GFF4791	0.45	-1.0
4,786,504	-		GFF4791	0.45	+0.2
4,786,504	-		GFF4791	0.45	-2.7
4,786,511	+		GFF4791	0.46	-1.0
4,786,511	+		GFF4791	0.46	-0.6
4,786,511	+		GFF4791	0.46	-0.2
4,786,522	+		GFF4791	0.46	-0.4
4,786,573	-		GFF4791	0.50	-1.3
4,786,573	-		GFF4791	0.50	-1.2
4,786,652	+		GFF4791	0.55	-1.5
4,786,652	+		GFF4791	0.55	-1.2
4,786,654	+		GFF4791	0.56	+0.2
4,786,660	-		GFF4791	0.56	+0.3
4,786,660	-		GFF4791	0.56	-1.3
4,786,660	-		GFF4791	0.56	-0.4
4,786,660	-		GFF4791	0.56	+0.4
4,786,664	+		GFF4791	0.56	-2.1
4,786,666	+		GFF4791	0.56	-1.0
4,786,666	+		GFF4791	0.56	-2.3
4,786,671	+		GFF4791	0.57	-0.5
4,786,673	+		GFF4791	0.57	+0.9
4,786,679	-		GFF4791	0.57	-2.9
4,786,679	-		GFF4791	0.57	+0.3
4,786,696	+		GFF4791	0.59	-0.6
4,786,727	+		GFF4791	0.61	-1.8
4,786,728	+		GFF4791	0.61	+0.4
4,786,730	-		GFF4791	0.61	-1.0
4,786,735	-		GFF4791	0.61	-1.3
4,786,735	-		GFF4791	0.61	-0.0
4,786,777	+		GFF4791	0.64	-0.9
4,786,782	+		GFF4791	0.65	-1.6
4,786,790	-		GFF4791	0.65	+0.8
4,786,790	-		GFF4791	0.65	-2.5
4,786,792	+		GFF4791	0.65	+0.5
4,786,792	+		GFF4791	0.65	-0.5
4,786,797	+		GFF4791	0.66	-0.6
4,786,800	-		GFF4791	0.66	+0.3
4,786,800	-		GFF4791	0.66	+0.0
4,786,826	-		GFF4791	0.68	-0.9
4,786,836	+		GFF4791	0.68	-0.8
4,786,844	-		GFF4791	0.69	-0.1
4,786,858	-		GFF4791	0.70	+1.1
4,786,869	+		GFF4791	0.71	-1.5
4,786,882	+		GFF4791	0.72	-0.0
4,786,882	+		GFF4791	0.72	-1.2
4,786,892	+		GFF4791	0.72	-0.5
4,786,892	+		GFF4791	0.72	-2.7
4,786,905	-		GFF4791	0.73	-1.8
4,786,916	-		GFF4791	0.74	-3.1
4,786,959	-		GFF4791	0.77	-1.5
4,786,979	+		GFF4791	0.78	-0.5
4,786,979	+		GFF4791	0.78	-1.3
4,786,983	-		GFF4791	0.79	-1.2
4,786,985	+		GFF4791	0.79	-0.8
4,787,003	+		GFF4791	0.80	-1.6
4,787,011	-		GFF4791	0.81	+0.5
4,787,011	-		GFF4791	0.81	+0.3
4,787,011	-		GFF4791	0.81	-0.4
4,787,020	-		GFF4791	0.81	-0.1
4,787,023	+		GFF4791	0.81	-1.3
4,787,031	-		GFF4791	0.82	-0.2
4,787,040	+		GFF4791	0.83	+1.1
4,787,057	+		GFF4791	0.84	-1.7
4,787,075	-		GFF4791	0.85	-0.8
4,787,080	-		GFF4791	0.85	-1.7
4,787,094	+		GFF4791	0.86	+0.3
4,787,094	+		GFF4791	0.86	-1.7
4,787,099	+		GFF4791	0.87	-1.7
4,787,099	+		GFF4791	0.87	+0.8
4,787,099	+		GFF4791	0.87	-0.1
4,787,102	-		GFF4791	0.87	-0.8
4,787,107	-		GFF4791	0.87	+0.7
4,787,155	+				-1.3
4,787,155	+				-3.0
4,787,155	+				+0.3
4,787,157	+				+0.2
4,787,157	+				-0.8
4,787,157	+				-1.6
4,787,165	-				-0.5
4,787,173	+				-0.1
4,787,178	+				-0.7
4,787,186	-				-0.4
4,787,190	+				-2.4
4,787,198	-				-1.7
4,787,201	+				-0.0
4,787,201	+				-0.1
4,787,209	-				+0.2
4,787,220	+				-0.3
4,787,237	+				+0.2
4,787,255	-				-0.6
4,787,263	+				+0.1
4,787,270	+				-0.7
4,787,278	+				+1.2
4,787,278	-				-3.5
4,787,278	-				-0.4
4,787,278	-				-0.8
4,787,316	-				-1.3
4,787,331	-				+0.2
4,787,337	+				-0.8
4,787,349	+				-3.4
4,787,357	-				+0.5
4,787,357	-				+0.5
4,787,357	-				-1.0
4,787,357	-				-1.2
4,787,367	-				-1.5
4,787,390	-				-0.1
4,787,404	-				-0.1
4,787,404	-				-1.2
4,787,406	+				-0.2
4,787,415	+				-2.9
4,787,423	-				+0.2
4,787,441	-				-2.6
4,787,441	-				-0.2
4,787,451	-				-2.2
4,787,466	-				-0.2
4,787,506	+		GFF4792	0.11	+0.3
4,787,511	+		GFF4792	0.12	-1.2
4,787,514	-		GFF4792	0.12	-2.6
4,787,564	+		GFF4792	0.16	-2.1
4,787,572	-		GFF4792	0.16	-0.1
4,787,572	-		GFF4792	0.16	-0.5
4,787,572	-		GFF4792	0.16	-2.1
4,787,572	-		GFF4792	0.16	+0.9
4,787,572	-		GFF4792	0.16	+0.2
4,787,572	-		GFF4792	0.16	+0.3
4,787,577	-		GFF4792	0.17	-1.5
4,787,586	+		GFF4792	0.17	-0.3
4,787,594	-		GFF4792	0.18	+0.1
4,787,594	-		GFF4792	0.18	-0.7
4,787,595	-		GFF4792	0.18	-2.4
4,787,618	+		GFF4792	0.20	-2.5
4,787,618	+		GFF4792	0.20	-1.5
4,787,618	-		GFF4792	0.20	-2.4
4,787,618	-		GFF4792	0.20	-0.2
4,787,625	+		GFF4792	0.20	+0.9
4,787,626	-		GFF4792	0.20	-0.5
4,787,626	-		GFF4792	0.20	-1.3
4,787,626	-		GFF4792	0.20	-0.9
4,787,626	-		GFF4792	0.20	-0.2
4,787,626	-		GFF4792	0.20	+0.9
4,787,626	-		GFF4792	0.20	-1.8
4,787,633	-		GFF4792	0.21	-0.8
4,787,643	+		GFF4792	0.22	-0.5
4,787,643	+		GFF4792	0.22	+0.6
4,787,643	+		GFF4792	0.22	-0.2
4,787,659	+		GFF4792	0.23	+0.5
4,787,689	-		GFF4792	0.25	+0.3
4,787,689	-		GFF4792	0.25	+0.1
4,787,689	-		GFF4792	0.25	-1.7
4,787,691	-		GFF4792	0.25	-1.0
4,787,718	+		GFF4792	0.27	-1.3
4,787,719	-		GFF4792	0.27	-0.6
4,787,749	+		GFF4792	0.30	-1.8
4,787,749	+		GFF4792	0.30	-0.5
4,787,775	+		GFF4792	0.32	-0.3
4,787,783	-		GFF4792	0.32	-0.4
4,787,783	-		GFF4792	0.32	-1.7
4,787,837	-		GFF4792	0.36	-1.5
4,787,846	-		GFF4792	0.37	+0.2
4,787,850	+		GFF4792	0.37	-1.5
4,787,922	-		GFF4792	0.43	-2.1
4,787,936	-		GFF4792	0.44	-2.6
4,787,940	-		GFF4792	0.44	-1.0
4,787,950	-		GFF4792	0.45	-2.4
4,787,967	+		GFF4792	0.46	-1.7
4,787,970	-		GFF4792	0.46	-0.6
4,787,997	+		GFF4792	0.48	-0.1
4,787,997	+		GFF4792	0.48	-0.7
4,787,997	+		GFF4792	0.48	+0.1
4,787,997	+		GFF4792	0.48	-0.3
4,787,997	+		GFF4792	0.48	+0.3
4,788,003	+		GFF4792	0.49	+0.1
4,788,005	-		GFF4792	0.49	-0.3
4,788,005	-		GFF4792	0.49	-0.0
4,788,005	-		GFF4792	0.49	-0.0
4,788,005	-		GFF4792	0.49	-1.0
4,788,020	+		GFF4792	0.50	-1.4
4,788,028	-		GFF4792	0.51	-0.7
4,788,028	-		GFF4792	0.51	-1.8
4,788,028	-		GFF4792	0.51	-0.5
4,788,030	+		GFF4792	0.51	+0.2
4,788,030	-		GFF4792	0.51	-2.0
4,788,041	+		GFF4792	0.52	-0.7
4,788,047	+		GFF4792	0.52	-0.9
4,788,054	+		GFF4792	0.53	-0.9
4,788,072	+		GFF4792	0.54	+0.7
4,788,080	-		GFF4792	0.55	+0.8
4,788,080	-		GFF4792	0.55	+1.0
4,788,084	+		GFF4792	0.55	-0.4
4,788,092	-		GFF4792	0.56	+0.4
4,788,092	-		GFF4792	0.56	-0.9
4,788,095	+		GFF4792	0.56	+0.0
4,788,095	+		GFF4792	0.56	-0.3
4,788,095	+		GFF4792	0.56	-1.1
4,788,095	+		GFF4792	0.56	+0.6
4,788,102	-		GFF4792	0.56	-0.6
4,788,102	-		GFF4792	0.56	-1.3
4,788,103	-		GFF4792	0.56	+0.2
4,788,103	-		GFF4792	0.56	-2.1
4,788,103	-		GFF4792	0.56	-1.6
4,788,105	+		GFF4792	0.56	-1.1
4,788,121	+		GFF4792	0.58	-0.3
4,788,121	+		GFF4792	0.58	-1.7
4,788,121	+		GFF4792	0.58	-1.2
4,788,129	-		GFF4792	0.58	-0.0
4,788,129	-		GFF4792	0.58	-1.1
4,788,148	+		GFF4792	0.60	-2.1
4,788,148	+		GFF4792	0.60	+0.2
4,788,247	-		GFF4792	0.67	-1.4
4,788,247	-		GFF4792	0.67	-1.2
4,788,259	-		GFF4792	0.68	-0.9
4,788,284	+		GFF4792	0.70	-0.4
4,788,284	+		GFF4792	0.70	-1.0
4,788,292	-		GFF4792	0.71	+0.4
4,788,293	+		GFF4792	0.71	-1.7
4,788,301	+		GFF4792	0.71	-0.3
4,788,301	-		GFF4792	0.71	-0.8
4,788,301	-		GFF4792	0.71	-0.4
4,788,301	-		GFF4792	0.71	+1.0
4,788,303	+		GFF4792	0.71	-1.2
4,788,303	+		GFF4792	0.71	+0.1
4,788,309	+		GFF4792	0.72	-0.3
4,788,311	-		GFF4792	0.72	-1.2
4,788,311	-		GFF4792	0.72	+0.3
4,788,311	-		GFF4792	0.72	-1.3
4,788,351	+		GFF4792	0.75	-0.1
4,788,369	+		GFF4792	0.76	+0.2
4,788,409	-		GFF4792	0.79	+0.9
4,788,410	+		GFF4792	0.79	-1.7
4,788,410	+		GFF4792	0.79	-2.5
4,788,410	+		GFF4792	0.79	-0.4
4,788,410	+		GFF4792	0.79	-0.1
4,788,410	+		GFF4792	0.79	+0.4
4,788,410	+		GFF4792	0.79	-0.6
4,788,418	-		GFF4792	0.80	-0.5
4,788,418	-		GFF4792	0.80	-0.9
4,788,420	+		GFF4792	0.80	-2.6
4,788,452	+		GFF4792	0.83	-1.7
4,788,454	+		GFF4792	0.83	-1.4
4,788,512	+		GFF4792	0.87	+0.2
4,788,520	+		GFF4792	0.88	-2.2
4,788,520	+		GFF4792	0.88	-2.1
4,788,520	+		GFF4792	0.88	-2.7
4,788,520	+		GFF4792	0.88	-0.4
4,788,520	-		GFF4792	0.88	-1.3
4,788,528	-		GFF4792	0.88	-0.3
4,788,528	-		GFF4792	0.88	-0.6
4,788,528	-		GFF4792	0.88	-1.3
4,788,528	-		GFF4792	0.88	-1.7
4,788,533	-		GFF4792	0.89	-0.6
4,788,533	-		GFF4792	0.89	-0.3
4,788,533	-		GFF4792	0.89	-1.2
4,788,538	-		GFF4792	0.89	-1.5
4,788,554	-				-0.6
4,788,563	+				-0.9
4,788,571	-				-0.9
4,788,571	-				-1.3
4,788,571	-				-0.9
4,788,573	-				-0.7
4,788,639	+				-1.0
4,788,639	+				+0.4
4,788,639	-				-0.6
4,788,647	-				-0.3
4,788,647	-				-0.6
4,788,647	-				-2.5
4,788,647	-				-1.1
4,788,658	+				-1.0
4,788,665	-				-0.9
4,788,676	+				+1.1
4,788,683	-				-0.4
4,788,683	-				-1.3
4,788,683	-				+0.1
4,788,683	-				-1.8
4,788,683	-				-0.7
4,788,683	-				+0.8
4,788,699	+				-2.5
4,788,699	+				-1.2
4,788,699	+				-1.5
4,788,699	+				-0.3
4,788,707	-				-1.3
4,788,712	-				-0.5
4,788,712	-				-0.8
4,788,716	-				-0.7
4,788,759	-		GFF4793	0.15	+0.1
4,788,779	-		GFF4793	0.20	-0.4
4,788,795	+		GFF4793	0.24	-0.9
4,788,802	+		GFF4793	0.25	+0.2
4,788,802	+		GFF4793	0.25	-0.7
4,788,802	+		GFF4793	0.25	-1.2
4,788,802	+		GFF4793	0.25	-2.4
4,788,803	-		GFF4793	0.26	-0.4
4,788,803	-		GFF4793	0.26	-0.5
4,788,803	-		GFF4793	0.26	-1.7
4,788,810	-		GFF4793	0.27	-0.4
4,788,810	-		GFF4793	0.27	+0.4
4,788,810	-		GFF4793	0.27	-1.8
4,788,810	-		GFF4793	0.27	-0.6
4,788,813	+		GFF4793	0.28	-0.1
4,788,818	+		GFF4793	0.29	-0.9
4,788,818	+		GFF4793	0.29	+0.4
4,788,818	+		GFF4793	0.29	-0.9
4,788,818	+		GFF4793	0.29	-0.2
4,788,818	+		GFF4793	0.29	-1.4
4,788,818	+		GFF4793	0.29	-1.1
4,788,818	+		GFF4793	0.29	-0.8
4,788,818	+		GFF4793	0.29	+0.9
4,788,818	+		GFF4793	0.29	+0.3
4,788,818	+		GFF4793	0.29	-2.9
4,788,820	-		GFF4793	0.30	+1.8
4,788,826	-		GFF4793	0.31	-0.3
4,788,826	-		GFF4793	0.31	-1.7
4,788,831	+		GFF4793	0.33	-0.0
4,788,833	+		GFF4793	0.33	-0.7
4,788,837	+		GFF4793	0.34	-0.5
4,788,841	-		GFF4793	0.35	-0.7
4,788,849	+		GFF4793	0.37	-0.1
4,788,875	+		GFF4793	0.44	-1.3
4,788,887	+		GFF4793	0.47	-1.5
4,788,895	-		GFF4793	0.49	-1.6
4,788,913	+		GFF4793	0.53	-1.3
4,788,916	-		GFF4793	0.54	-2.2
4,788,919	+		GFF4793	0.55	-0.3
4,788,922	-		GFF4793	0.55	-0.4
4,788,924	+		GFF4793	0.56	-0.6
4,788,924	+		GFF4793	0.56	-1.5
4,788,934	+		GFF4793	0.58	+0.1
4,788,942	-		GFF4793	0.60	-1.3
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