Strain Fitness in Sphingobium sp. HT1-2 around GFF4785

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,778,547	+				-2.4
4,778,547	-				+0.3
4,778,592	+				-1.7
4,778,592	+				-0.5
4,778,600	-				-0.4
4,778,600	-				-1.0
4,778,600	-				-0.5
4,778,604	+				-0.4
4,778,612	-				-2.1
4,778,672	+				-0.4
4,778,674	-				-1.2
4,778,680	-				+0.7
4,778,693	+				-2.6
4,778,706	-				+0.7
4,778,706	-				-0.5
4,778,722	+				+0.4
4,778,725	-				-1.8
4,778,754	+				+1.0
4,778,786	-				-2.1
4,778,798	-				-1.9
4,778,811	+				-2.1
4,778,819	-				+0.0
4,778,819	-				-0.3
4,778,819	-				-1.0
4,778,821	+				+0.2
4,778,823	+				-0.5
4,778,823	+				-1.6
4,778,823	+				-0.1
4,778,826	-				+0.5
4,778,829	-				-1.1
4,778,831	-				+0.3
4,778,857	+				-0.7
4,778,857	+				-2.0
4,778,857	+				-0.2
4,778,865	-				-1.5
4,778,883	+				-0.4
4,778,902	-				-2.5
4,778,905	+				-0.2
4,778,913	+				-1.2
4,778,924	-				-0.0
4,778,936	+				-1.0
4,778,936	+				-1.4
4,778,944	-				+0.8
4,778,954	+				-0.6
4,778,976	+				-2.9
4,778,984	-				+0.4
4,778,984	-				-1.0
4,778,991	+				-0.8
4,778,991	+				-0.6
4,778,991	+				-2.2
4,778,991	+				-1.0
4,778,991	+				+0.2
4,778,991	+				+0.3
4,778,991	+				-0.1
4,778,991	+				+0.1
4,778,991	+				+0.4
4,778,991	+				-0.5
4,778,994	-		GFF4784	0.11	-2.2
4,778,999	-		GFF4784	0.12	-0.2
4,778,999	-		GFF4784	0.12	-0.3
4,778,999	-		GFF4784	0.12	+0.3
4,778,999	-		GFF4784	0.12	-3.0
4,778,999	-		GFF4784	0.12	-1.5
4,778,999	-		GFF4784	0.12	-0.9
4,778,999	-		GFF4784	0.12	-0.2
4,778,999	-		GFF4784	0.12	-1.1
4,778,999	-		GFF4784	0.12	-0.5
4,778,999	-		GFF4784	0.12	+0.8
4,778,999	-		GFF4784	0.12	-1.0
4,779,001	+		GFF4784	0.12	-0.5
4,779,002	+		GFF4784	0.12	-1.1
4,779,027	+		GFF4784	0.18	-3.1
4,779,027	+		GFF4784	0.18	-1.9
4,779,035	-		GFF4784	0.19	-2.1
4,779,045	-		GFF4784	0.22	-2.1
4,779,045	-		GFF4784	0.22	-1.5
4,779,045	-		GFF4784	0.22	+0.2
4,779,045	-		GFF4784	0.22	-0.8
4,779,053	+		GFF4784	0.23	-0.4
4,779,068	-		GFF4784	0.26	-0.3
4,779,133	+		GFF4784	0.40	-0.6
4,779,141	-		GFF4784	0.42	-0.3
4,779,160	+		GFF4784	0.46	-0.2
4,779,212	+		GFF4784	0.57	+0.3
4,779,212	+		GFF4784	0.57	+1.3
4,779,212	+		GFF4784	0.57	+0.6
4,779,217	+		GFF4784	0.58	-2.9
4,779,220	-		GFF4784	0.59	+0.1
4,779,220	-		GFF4784	0.59	+0.3
4,779,220	-		GFF4784	0.59	-2.1
4,779,220	-		GFF4784	0.59	-0.2
4,779,220	-		GFF4784	0.59	+0.3
4,779,220	-		GFF4784	0.59	-0.2
4,779,220	-		GFF4784	0.59	+0.3
4,779,220	-		GFF4784	0.59	-1.4
4,779,220	-		GFF4784	0.59	-0.3
4,779,220	-		GFF4784	0.59	-0.2
4,779,225	-		GFF4784	0.60	-1.0
4,779,226	-		GFF4784	0.60	-0.6
4,779,226	-		GFF4784	0.60	-0.5
4,779,238	-		GFF4784	0.63	+0.5
4,779,251	+		GFF4784	0.66	-0.7
4,779,259	-		GFF4784	0.68	-0.7
4,779,259	-		GFF4784	0.68	-0.8
4,779,259	-		GFF4784	0.68	-1.1
4,779,259	-		GFF4784	0.68	-0.0
4,779,259	-		GFF4784	0.68	+0.4
4,779,266	+		GFF4784	0.69	-0.7
4,779,266	+		GFF4784	0.69	-0.6
4,779,276	+		GFF4784	0.71	-1.8
4,779,279	-		GFF4784	0.72	-2.9
4,779,279	-		GFF4784	0.72	+0.0
4,779,303	-		GFF4784	0.77	-0.4
4,779,313	-		GFF4784	0.79	-2.5
4,779,313	-		GFF4784	0.79	-0.0
4,779,336	-		GFF4784	0.84	+0.2
4,779,336	-		GFF4784	0.84	+0.2
4,779,336	-		GFF4784	0.84	-0.4
4,779,345	+		GFF4784	0.86	-0.1
4,779,347	+		GFF4784	0.86	-2.0
4,779,365	+				-0.5
4,779,373	-				-1.5
4,779,389	-				-1.4
4,779,389	-				-1.4
4,779,389	-				-1.3
4,779,389	-				-0.2
4,779,393	+				-1.9
4,779,406	+				-2.4
4,779,538	-				+0.0
4,779,557	+				-1.3
4,779,568	-				-2.9
4,779,570	+				+0.0
4,779,570	+				-0.4
4,779,578	-				-1.8
4,779,602	+				+0.9
4,779,615	+				+0.7
4,779,628	-		GFF4785	0.11	-0.2
4,779,630	+		GFF4785	0.11	-1.7
4,779,654	+		GFF4785	0.14	-1.3
4,779,675	+		GFF4785	0.16	-2.4
4,779,675	+		GFF4785	0.16	-0.5
4,779,726	+		GFF4785	0.22	-1.8
4,779,726	+		GFF4785	0.22	-0.1
4,779,731	+		GFF4785	0.23	-0.2
4,779,734	-		GFF4785	0.23	-3.1
4,779,752	-		GFF4785	0.25	-1.4
4,779,758	-		GFF4785	0.26	-1.7
4,779,771	+		GFF4785	0.27	-1.3
4,779,780	-		GFF4785	0.28	+0.2
4,779,788	+		GFF4785	0.29	-1.4
4,779,788	+		GFF4785	0.29	-0.5
4,779,793	+		GFF4785	0.30	-1.3
4,779,793	+		GFF4785	0.30	-0.7
4,779,793	+		GFF4785	0.30	-0.2
4,779,793	+		GFF4785	0.30	-1.3
4,779,794	+		GFF4785	0.30	-1.7
4,779,794	+		GFF4785	0.30	-0.9
4,779,794	+		GFF4785	0.30	-1.3
4,779,794	+		GFF4785	0.30	+1.7
4,779,796	-		GFF4785	0.30	-0.7
4,779,796	-		GFF4785	0.30	-1.9
4,779,798	+		GFF4785	0.30	-0.8
4,779,799	+		GFF4785	0.30	-1.6
4,779,801	-		GFF4785	0.30	-0.6
4,779,801	-		GFF4785	0.30	-2.3
4,779,801	-		GFF4785	0.30	+0.5
4,779,802	-		GFF4785	0.31	-1.4
4,779,802	-		GFF4785	0.31	-1.8
4,779,804	+		GFF4785	0.31	-0.4
4,779,807	-		GFF4785	0.31	+0.3
4,779,807	-		GFF4785	0.31	+0.7
4,779,807	-		GFF4785	0.31	+0.9
4,779,886	+		GFF4785	0.40	-1.7
4,779,894	-		GFF4785	0.41	+1.0
4,779,897	+		GFF4785	0.41	-0.0
4,779,907	+		GFF4785	0.42	-0.1
4,779,907	+		GFF4785	0.42	-3.0
4,779,915	-		GFF4785	0.43	-1.1
4,779,915	-		GFF4785	0.43	-0.5
4,779,915	-		GFF4785	0.43	-2.3
4,779,915	-		GFF4785	0.43	-0.8
4,779,915	-		GFF4785	0.43	-1.3
4,779,915	-		GFF4785	0.43	-1.1
4,779,915	-		GFF4785	0.43	-0.1
4,779,915	-		GFF4785	0.43	-1.3
4,779,915	-		GFF4785	0.43	-0.4
4,779,915	-		GFF4785	0.43	-1.0
4,779,917	+		GFF4785	0.43	-1.4
4,779,920	-		GFF4785	0.44	-1.2
4,779,920	-		GFF4785	0.44	-0.6
4,779,920	-		GFF4785	0.44	+0.0
4,779,925	-		GFF4785	0.44	+0.8
4,779,932	+		GFF4785	0.45	-0.4
4,779,932	+		GFF4785	0.45	-1.1
4,779,932	+		GFF4785	0.45	-1.5
4,779,932	+		GFF4785	0.45	+0.1
4,779,932	+		GFF4785	0.45	-0.9
4,779,932	+		GFF4785	0.45	+0.2
4,779,932	+		GFF4785	0.45	-2.7
4,779,932	+		GFF4785	0.45	-0.7
4,779,932	+		GFF4785	0.45	+0.7
4,779,932	+		GFF4785	0.45	-1.7
4,779,932	+		GFF4785	0.45	-0.1
4,779,932	+		GFF4785	0.45	-0.6
4,779,940	-		GFF4785	0.46	-0.0
4,779,940	-		GFF4785	0.46	-1.7
4,779,940	-		GFF4785	0.46	-1.0
4,779,940	-		GFF4785	0.46	-2.3
4,779,940	-		GFF4785	0.46	-2.3
4,779,940	-		GFF4785	0.46	-0.3
4,779,940	-		GFF4785	0.46	-0.9
4,779,940	-		GFF4785	0.46	+0.0
4,779,940	-		GFF4785	0.46	-0.9
4,779,940	-		GFF4785	0.46	+0.9
4,779,940	-		GFF4785	0.46	-2.4
4,779,940	-		GFF4785	0.46	+0.6
4,779,940	-		GFF4785	0.46	-3.0
4,779,940	-		GFF4785	0.46	-3.6
4,779,940	-		GFF4785	0.46	-0.7
4,779,940	-		GFF4785	0.46	-0.1
4,779,940	-		GFF4785	0.46	-2.2
4,779,940	-		GFF4785	0.46	-1.2
4,779,975	+		GFF4785	0.50	-0.0
4,779,983	-		GFF4785	0.51	+0.3
4,780,007	-		GFF4785	0.53	+0.1
4,780,010	+		GFF4785	0.54	+0.7
4,780,018	-		GFF4785	0.55	+1.0
4,780,026	-		GFF4785	0.56	+1.0
4,780,028	+		GFF4785	0.56	-0.3
4,780,036	-		GFF4785	0.57	-1.0
4,780,036	-		GFF4785	0.57	-0.1
4,780,036	-		GFF4785	0.57	+0.4
4,780,036	-		GFF4785	0.57	-1.4
4,780,038	+		GFF4785	0.57	-0.9
4,780,038	+		GFF4785	0.57	+0.4
4,780,046	-		GFF4785	0.58	-2.1
4,780,046	-		GFF4785	0.58	-2.2
4,780,046	-		GFF4785	0.58	-2.2
4,780,046	-		GFF4785	0.58	-1.4
4,780,073	+		GFF4785	0.61	-1.4
4,780,075	-		GFF4785	0.61	-1.3
4,780,130	-		GFF4785	0.67	-0.3
4,780,130	-		GFF4785	0.67	-1.0
4,780,130	-		GFF4785	0.67	-0.2
4,780,133	+		GFF4785	0.68	-1.8
4,780,148	+		GFF4785	0.69	-0.4
4,780,150	+		GFF4785	0.69	-1.4
4,780,186	+		GFF4785	0.73	-2.0
4,780,186	+		GFF4785	0.73	-0.8
4,780,186	+		GFF4785	0.73	-0.1
4,780,194	-		GFF4785	0.74	-1.6
4,780,194	-		GFF4785	0.74	+0.2
4,780,194	-		GFF4785	0.74	+0.5
4,780,194	-		GFF4785	0.74	-1.4
4,780,197	-		GFF4785	0.75	-2.0
4,780,200	+		GFF4785	0.75	-1.1
4,780,200	+		GFF4785	0.75	-0.6
4,780,212	+		GFF4785	0.76	-1.5
4,780,213	-		GFF4785	0.77	-1.3
4,780,213	-		GFF4785	0.77	-0.7
4,780,213	-		GFF4785	0.77	-1.5
4,780,234	+		GFF4785	0.79	-2.0
4,780,236	+		GFF4785	0.79	+0.0
4,780,237	-		GFF4785	0.79	+0.0
4,780,241	+		GFF4785	0.80	-1.3
4,780,242	-		GFF4785	0.80	-1.7
4,780,244	-		GFF4785	0.80	+0.3
4,780,249	-		GFF4785	0.81	-0.1
4,780,253	+		GFF4785	0.81	+0.4
4,780,271	-		GFF4785	0.83	-1.1
4,780,278	-		GFF4785	0.84	+0.1
4,780,278	-		GFF4785	0.84	+0.3
4,780,297	-		GFF4785	0.86	-1.8
4,780,297	-		GFF4785	0.86	-1.8
4,780,302	-		GFF4785	0.86	-0.5
4,780,316	-		GFF4785	0.88	+1.1
4,780,338	-				-1.6
4,780,342	+				-0.4
4,780,342	+				-2.5
4,780,348	-				-0.8
4,780,358	-				-2.8
4,780,370	+				-2.0
4,780,383	+				-0.3
4,780,394	+				-0.5
4,780,413	-				-2.5
4,780,413	-				+0.9
4,780,423	-				-0.4
4,780,430	+				+0.1
4,780,439	+				-0.4
4,780,439	+				-0.5
4,780,439	+				+0.9
4,780,439	+				-0.8
4,780,444	+				-1.2
4,780,447	-				+0.4
4,780,447	-				-0.6
4,780,447	-				-1.2
4,780,447	-				-1.3
4,780,452	-				-1.5
4,780,459	+				-0.8
4,780,459	+				+1.5
4,780,459	+				+0.1
4,780,467	-				-0.1
4,780,467	-				-1.1
4,780,470	+				-0.3
4,780,486	-				-0.2
4,780,501	-				-2.0
4,780,505	+				-2.6
4,780,512	+				-2.3
4,780,534	+				-0.0
4,780,536	-				-0.8
4,780,542	-				+0.1
4,780,542	-				-0.8
4,780,552	+				+0.1
4,780,552	-				-0.6
4,780,559	-				+0.3
4,780,614	+		GFF4786	0.14	-3.5
4,780,615	+		GFF4786	0.14	-2.0
4,780,617	+		GFF4786	0.14	+0.4
4,780,622	+		GFF4786	0.14	-2.0
4,780,623	-		GFF4786	0.14	-1.9
4,780,634	-		GFF4786	0.15	-0.1
4,780,643	+		GFF4786	0.16	-2.0
4,780,674	+		GFF4786	0.19	-0.7
4,780,682	-		GFF4786	0.19	-1.8
4,780,684	-		GFF4786	0.20	-1.3
4,780,684	-		GFF4786	0.20	-0.1
4,780,684	-		GFF4786	0.20	-0.3
4,780,684	-		GFF4786	0.20	+0.2
4,780,689	-		GFF4786	0.20	-1.1
4,780,718	+		GFF4786	0.23	-0.4
4,780,721	-		GFF4786	0.23	+1.7
4,780,726	-		GFF4786	0.23	-0.7
4,780,726	-		GFF4786	0.23	+0.2
4,780,726	-		GFF4786	0.23	-1.9
4,780,726	-		GFF4786	0.23	-0.1
4,780,726	-		GFF4786	0.23	-1.4
4,780,728	+		GFF4786	0.23	+0.2
4,780,751	+		GFF4786	0.25	-0.8
4,780,751	+		GFF4786	0.25	-1.0
4,780,751	+		GFF4786	0.25	-0.3
4,780,751	+		GFF4786	0.25	-0.5
4,780,751	+		GFF4786	0.25	-2.1
4,780,751	+		GFF4786	0.25	-0.2
4,780,759	-		GFF4786	0.26	-0.2
4,780,759	-		GFF4786	0.26	-1.1
4,780,759	-		GFF4786	0.26	-1.3
4,780,759	-		GFF4786	0.26	-1.1
4,780,759	-		GFF4786	0.26	-0.9
4,780,759	-		GFF4786	0.26	-0.4
4,780,759	-		GFF4786	0.26	+0.6
4,780,759	-		GFF4786	0.26	-0.4
4,780,771	-		GFF4786	0.27	-1.4
4,780,837	+		GFF4786	0.33	-2.2
4,780,837	+		GFF4786	0.33	-0.2
4,780,837	+		GFF4786	0.33	-0.9
4,780,845	-		GFF4786	0.34	+1.1
4,780,845	-		GFF4786	0.34	+0.2
4,780,845	-		GFF4786	0.34	-0.1
4,780,845	-		GFF4786	0.34	-0.2
4,780,845	-		GFF4786	0.34	-1.0
4,780,845	-		GFF4786	0.34	-2.3
4,780,854	+		GFF4786	0.34	-1.1
4,780,854	+		GFF4786	0.34	-1.3
4,780,854	+		GFF4786	0.34	-0.1
4,780,862	-		GFF4786	0.35	-1.5
4,780,862	-		GFF4786	0.35	-0.7
4,780,862	-		GFF4786	0.35	-3.0
4,780,862	-		GFF4786	0.35	-1.4
4,780,862	-		GFF4786	0.35	-0.9
4,780,875	+		GFF4786	0.36	-0.9
4,780,875	+		GFF4786	0.36	-1.0
4,780,875	+		GFF4786	0.36	-0.6
4,780,880	+		GFF4786	0.37	-0.8
4,780,883	-		GFF4786	0.37	-1.4
4,780,890	-		GFF4786	0.37	-0.1
4,780,892	+		GFF4786	0.38	-2.3
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4,780,902	+		GFF4786	0.39	+0.9
4,780,926	-		GFF4786	0.41	-1.0
4,780,931	-		GFF4786	0.41	-0.2
4,780,931	-		GFF4786	0.41	-0.7
4,780,931	-		GFF4786	0.41	+0.3
4,780,961	+		GFF4786	0.44	+0.3
4,780,962	+		GFF4786	0.44	-1.0
4,780,974	-		GFF4786	0.45	-0.5
4,780,982	+		GFF4786	0.45	-1.1
4,780,982	+		GFF4786	0.45	+0.7
4,780,982	+		GFF4786	0.45	-0.5
4,780,990	-		GFF4786	0.46	-0.6
4,781,000	+		GFF4786	0.47	-2.0
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4,781,009	+		GFF4786	0.48	-0.3
4,781,017	+		GFF4786	0.48	-0.4
4,781,017	-		GFF4786	0.48	+0.0
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4,781,031	+		GFF4786	0.50	+0.1
4,781,039	-		GFF4786	0.50	+0.1
4,781,039	-		GFF4786	0.50	-1.0
4,781,039	-		GFF4786	0.50	-0.6
4,781,057	+		GFF4786	0.52	-2.1
4,781,065	+		GFF4786	0.53	-1.7
4,781,073	-		GFF4786	0.53	-0.0
4,781,073	-		GFF4786	0.53	+1.1
4,781,073	-		GFF4786	0.53	+0.1
4,781,113	+		GFF4786	0.57	-0.7
4,781,120	+		GFF4786	0.57	-2.4
4,781,130	+		GFF4786	0.58	-1.0
4,781,130	+		GFF4786	0.58	-1.1
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4,781,168	+		GFF4786	0.62	-0.7
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4,781,187	+		GFF4786	0.63	-1.3
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4,781,298	-		GFF4786	0.73	-2.0
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4,781,346	+		GFF4786	0.77	-0.1
4,781,346	+		GFF4786	0.77	-1.7
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4,781,354	-		GFF4786	0.78	-0.7
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4,781,354	-		GFF4786	0.78	-1.9
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4,781,354	-		GFF4786	0.78	+0.1
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4,781,356	-		GFF4786	0.78	-1.0
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4,781,403	+		GFF4786	0.82	-0.5
4,781,410	+		GFF4786	0.83	-0.4
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