Strain Fitness in Sphingobium sp. HT1-2 around GFF4782

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,773,535	-		GFF4780	0.21	-2.7
4,773,540	-		GFF4780	0.22	-2.2
4,773,548	+		GFF4780	0.24	-1.1
4,773,555	-		GFF4780	0.25	-0.9
4,773,575	+		GFF4780	0.28	+0.3
4,773,591	+		GFF4780	0.31	+0.5
4,773,634	-		GFF4780	0.39	-2.4
4,773,642	-		GFF4780	0.40	-0.6
4,773,644	+		GFF4780	0.40	-1.0
4,773,644	+		GFF4780	0.40	-0.1
4,773,652	-		GFF4780	0.42	-1.2
4,773,652	-		GFF4780	0.42	-0.7
4,773,652	-		GFF4780	0.42	+0.9
4,773,718	+		GFF4780	0.53	-1.1
4,773,719	-		GFF4780	0.53	-0.2
4,773,736	-		GFF4780	0.56	-2.4
4,773,736	-		GFF4780	0.56	-0.2
4,773,762	-		GFF4780	0.61	-0.8
4,773,768	+		GFF4780	0.62	-0.5
4,773,773	+		GFF4780	0.63	+0.9
4,773,780	+		GFF4780	0.64	-0.8
4,773,788	-		GFF4780	0.65	-1.8
4,773,807	-		GFF4780	0.69	-3.1
4,773,816	+		GFF4780	0.70	-0.7
4,773,816	+		GFF4780	0.70	-2.2
4,773,816	+		GFF4780	0.70	-2.1
4,773,843	-		GFF4780	0.75	-1.5
4,773,869	+		GFF4780	0.80	+1.7
4,773,869	+		GFF4780	0.80	-0.4
4,773,869	+		GFF4780	0.80	-2.2
4,773,869	+		GFF4780	0.80	-0.0
4,773,874	+		GFF4780	0.80	-0.9
4,773,877	-		GFF4780	0.81	-1.0
4,773,877	-		GFF4780	0.81	-2.5
4,773,877	-		GFF4780	0.81	+0.7
4,773,879	+		GFF4780	0.81	+0.4
4,773,879	+		GFF4780	0.81	-1.0
4,773,879	+		GFF4780	0.81	-1.4
4,773,884	+		GFF4780	0.82	-1.6
4,773,887	-		GFF4780	0.83	+0.3
4,773,887	-		GFF4780	0.83	-0.8
4,773,887	-		GFF4780	0.83	-1.5
4,773,887	-		GFF4780	0.83	-0.9
4,773,887	-		GFF4780	0.83	-1.3
4,773,953	-				-0.8
4,773,962	+				-1.4
4,773,965	-				-0.7
4,773,976	+				+0.3
4,773,983	-				+0.8
4,773,983	-				-1.0
4,773,995	-				+0.4
4,774,027	+				+0.1
4,774,035	-				-0.1
4,774,067	+				+0.2
4,774,068	-				+0.6
4,774,073	-				-1.2
4,774,075	-				-0.8
4,774,075	-				-1.0
4,774,427	+				+0.5
4,774,432	-				-1.2
4,774,435	-				+0.5
4,774,435	-				-0.8
4,774,435	-				-1.0
4,774,443	+				-0.6
4,774,469	+				-3.3
4,774,470	-				+0.0
4,774,474	+				+0.3
4,774,474	+				-0.9
4,774,474	+				+0.3
4,774,474	+				-2.0
4,774,477	-				-1.1
4,774,482	+				-0.3
4,774,482	-				-2.0
4,774,482	-				+0.8
4,774,482	-				-0.6
4,774,482	-				-0.7
4,774,482	-				+1.0
4,774,499	-				-0.5
4,774,499	-				-2.7
4,774,506	-				-2.3
4,774,527	+				+0.7
4,774,537	-				-0.5
4,774,537	-				-2.1
4,774,596	-		GFF4782	0.11	-0.7
4,774,614	-		GFF4782	0.14	+0.3
4,774,614	-		GFF4782	0.14	+0.7
4,774,627	+		GFF4782	0.16	-0.4
4,774,627	+		GFF4782	0.16	-0.4
4,774,627	+		GFF4782	0.16	+1.1
4,774,635	-		GFF4782	0.17	+1.2
4,774,635	-		GFF4782	0.17	-0.1
4,774,660	-		GFF4782	0.20	+0.3
4,774,679	-		GFF4782	0.22	+0.6
4,774,685	+		GFF4782	0.23	-2.5
4,774,685	+		GFF4782	0.23	-2.0
4,774,685	+		GFF4782	0.23	-2.4
4,774,685	+		GFF4782	0.23	-0.6
4,774,685	+		GFF4782	0.23	-2.3
4,774,693	-		GFF4782	0.24	-1.8
4,774,693	-		GFF4782	0.24	-1.4
4,774,693	-		GFF4782	0.24	-1.9
4,774,706	-		GFF4782	0.26	-1.7
4,774,713	-		GFF4782	0.27	-0.0
4,774,713	-		GFF4782	0.27	+0.5
4,774,715	+		GFF4782	0.27	-0.0
4,774,715	+		GFF4782	0.27	-0.5
4,774,715	+		GFF4782	0.27	+0.7
4,774,723	-		GFF4782	0.28	-1.0
4,774,723	-		GFF4782	0.28	+1.1
4,774,723	-		GFF4782	0.28	-1.5
4,774,740	+		GFF4782	0.30	-0.7
4,774,743	-		GFF4782	0.31	-1.6
4,774,743	-		GFF4782	0.31	-0.2
4,774,748	-		GFF4782	0.31	-1.6
4,774,748	-		GFF4782	0.31	-0.3
4,774,748	-		GFF4782	0.31	-0.8
4,774,748	-		GFF4782	0.31	-1.4
4,774,753	+		GFF4782	0.32	-0.8
4,774,756	-		GFF4782	0.33	+0.3
4,774,758	+		GFF4782	0.33	+0.5
4,774,782	+		GFF4782	0.36	-1.1
4,774,785	-		GFF4782	0.36	+0.9
4,774,785	-		GFF4782	0.36	-1.3
4,774,785	-		GFF4782	0.36	-1.4
4,774,786	+		GFF4782	0.36	-0.7
4,774,787	+		GFF4782	0.37	-0.8
4,774,787	+		GFF4782	0.37	-1.1
4,774,787	+		GFF4782	0.37	-1.8
4,774,788	-		GFF4782	0.37	+0.5
4,774,790	-		GFF4782	0.37	+0.2
4,774,790	-		GFF4782	0.37	-1.0
4,774,790	-		GFF4782	0.37	-0.8
4,774,795	-		GFF4782	0.38	+0.4
4,774,795	-		GFF4782	0.38	-0.2
4,774,801	+		GFF4782	0.38	-0.5
4,774,809	-		GFF4782	0.40	+0.1
4,774,830	+		GFF4782	0.42	-0.9
4,774,830	+		GFF4782	0.42	-0.3
4,774,838	-		GFF4782	0.43	-2.3
4,774,838	-		GFF4782	0.43	-0.5
4,774,846	-		GFF4782	0.44	-2.1
4,774,846	-		GFF4782	0.44	+0.7
4,774,851	+		GFF4782	0.45	-1.5
4,774,859	+		GFF4782	0.46	+1.1
4,774,859	+		GFF4782	0.46	-0.7
4,774,867	-		GFF4782	0.47	+0.3
4,774,867	-		GFF4782	0.47	-0.1
4,774,867	-		GFF4782	0.47	-0.4
4,774,869	+		GFF4782	0.47	-0.8
4,774,869	+		GFF4782	0.47	-0.3
4,774,879	+		GFF4782	0.49	-0.5
4,774,903	-		GFF4782	0.52	-1.5
4,774,909	+		GFF4782	0.53	-1.5
4,774,927	+		GFF4782	0.55	-1.4
4,774,934	-		GFF4782	0.56	-0.5
4,774,937	+		GFF4782	0.56	-0.3
4,774,969	+		GFF4782	0.61	-0.4
4,774,969	+		GFF4782	0.61	+0.6
4,774,973	-		GFF4782	0.61	-0.1
4,774,975	+		GFF4782	0.61	-0.3
4,774,977	-		GFF4782	0.62	+0.3
4,774,977	-		GFF4782	0.62	-0.7
4,774,977	-		GFF4782	0.62	-0.4
4,775,005	+		GFF4782	0.65	-0.1
4,775,013	-		GFF4782	0.66	-0.5
4,775,028	-		GFF4782	0.68	-1.4
4,775,039	-		GFF4782	0.70	-2.1
4,775,041	-		GFF4782	0.70	-1.8
4,775,048	-		GFF4782	0.71	+1.3
4,775,048	-		GFF4782	0.71	-0.7
4,775,049	-		GFF4782	0.71	-0.9
4,775,051	+		GFF4782	0.71	-1.6
4,775,052	+		GFF4782	0.72	-1.2
4,775,052	+		GFF4782	0.72	-0.3
4,775,060	-		GFF4782	0.73	-0.9
4,775,060	-		GFF4782	0.73	+1.0
4,775,082	-		GFF4782	0.75	-0.4
4,775,103	+		GFF4782	0.78	-2.2
4,775,126	-		GFF4782	0.81	-2.6
4,775,127	+		GFF4782	0.81	-0.0
4,775,147	+		GFF4782	0.84	-0.0
4,775,155	-		GFF4782	0.85	-0.8
4,775,163	-		GFF4782	0.86	-1.0
4,775,197	+				-0.4
4,775,205	-				-0.9
4,775,205	-				+0.6
4,775,247	+				-2.3
4,775,250	-				+0.3
4,775,255	-				-0.7
4,775,271	+				-1.1
4,775,274	-				-3.0
4,775,274	-				+0.5
4,775,274	-				-2.0
4,775,279	-				-1.2
4,775,286	-				-1.7
4,775,287	-				-2.5
4,775,300	+				-1.1
4,775,315	+				-1.5
4,775,315	+				-2.2
4,775,318	-				-1.8
4,775,323	-				-1.9
4,775,323	-				-1.4
4,775,323	-				-2.6
4,775,323	-				+0.8
4,775,323	-				+0.5
4,775,326	+				-1.8
4,775,334	+				+0.1
4,775,339	+				-1.5
4,775,342	-				-1.0
4,775,347	-				-0.9
4,775,391	-				-2.2
4,775,432	+				-1.4
4,775,432	+				-0.7
4,775,432	+				-2.6
4,775,438	-				-1.3
4,775,440	-				+1.3
4,775,440	-				-1.1
4,775,440	-				-1.3
4,775,462	+				-0.5
4,775,466	+				-1.8
4,775,489	-				+1.0
4,775,516	+				-1.7
4,775,560	+				-0.1
4,775,565	-				-0.3
4,775,570	-				-0.7
4,775,585	+				+0.0
4,775,649	+				+0.1
4,775,674	+				-0.3
4,775,679	+		GFF4783	0.10	-1.0
4,775,682	-		GFF4783	0.10	-3.4
4,775,682	-		GFF4783	0.10	-1.0
4,775,682	-		GFF4783	0.10	-0.7
4,775,683	-		GFF4783	0.10	+1.0
4,775,695	+		GFF4783	0.11	-0.5
4,775,695	+		GFF4783	0.11	-1.4
4,775,703	-		GFF4783	0.11	-0.9
4,775,718	-		GFF4783	0.11	-3.3
4,775,763	+		GFF4783	0.12	-0.6
4,775,806	-		GFF4783	0.14	-2.9
4,775,815	+		GFF4783	0.14	-1.7
4,775,815	+		GFF4783	0.14	-2.1
4,775,823	-		GFF4783	0.14	-3.1
4,775,828	+		GFF4783	0.14	-0.1
4,775,836	-		GFF4783	0.14	-0.1
4,775,840	-		GFF4783	0.15	-2.5
4,775,842	+		GFF4783	0.15	-2.5
4,775,850	-		GFF4783	0.15	-1.2
4,775,850	-		GFF4783	0.15	-1.4
4,775,850	-		GFF4783	0.15	-0.6
4,775,850	-		GFF4783	0.15	-2.3
4,775,851	-		GFF4783	0.15	+0.3
4,775,851	-		GFF4783	0.15	+0.1
4,775,905	-		GFF4783	0.16	-0.5
4,775,914	+		GFF4783	0.17	-1.0
4,775,915	+		GFF4783	0.17	-3.4
4,775,915	-		GFF4783	0.17	-0.1
4,775,917	-		GFF4783	0.17	-0.4
4,775,936	+		GFF4783	0.17	-0.2
4,775,951	+		GFF4783	0.18	-0.4
4,775,962	-		GFF4783	0.18	-1.1
4,775,964	-		GFF4783	0.18	-1.7
4,775,965	+		GFF4783	0.18	+0.6
4,775,965	+		GFF4783	0.18	-1.1
4,775,965	+		GFF4783	0.18	-0.1
4,775,965	+		GFF4783	0.18	-0.9
4,775,966	+		GFF4783	0.18	+0.3
4,775,970	+		GFF4783	0.18	-1.3
4,775,973	-		GFF4783	0.18	-1.1
4,775,973	-		GFF4783	0.18	-2.0
4,775,973	-		GFF4783	0.18	-1.0
4,775,975	+		GFF4783	0.18	-0.2
4,775,975	+		GFF4783	0.18	-1.0
4,775,975	+		GFF4783	0.18	-1.9
4,775,975	+		GFF4783	0.18	-2.7
4,775,975	+		GFF4783	0.18	-0.0
4,775,975	+		GFF4783	0.18	-0.9
4,775,975	+		GFF4783	0.18	+0.8
4,775,975	+		GFF4783	0.18	-0.5
4,775,975	+		GFF4783	0.18	-0.8
4,775,975	+		GFF4783	0.18	+0.2
4,775,975	+		GFF4783	0.18	-0.6
4,775,975	+		GFF4783	0.18	-0.4
4,775,975	+		GFF4783	0.18	-1.4
4,775,975	+		GFF4783	0.18	-2.5
4,775,975	+		GFF4783	0.18	+0.8
4,775,975	+		GFF4783	0.18	-1.7
4,775,976	-		GFF4783	0.18	-2.1
4,775,980	+		GFF4783	0.19	+0.7
4,775,980	+		GFF4783	0.19	-0.1
4,775,980	+		GFF4783	0.19	-0.8
4,775,980	+		GFF4783	0.19	+0.9
4,775,980	+		GFF4783	0.19	-0.2
4,775,980	+		GFF4783	0.19	-0.5
4,775,980	+		GFF4783	0.19	+0.3
4,775,980	+		GFF4783	0.19	+0.9
4,775,980	+		GFF4783	0.19	-0.7
4,775,980	+		GFF4783	0.19	-0.4
4,775,980	+		GFF4783	0.19	-0.3
4,775,980	+		GFF4783	0.19	+0.3
4,775,980	+		GFF4783	0.19	-0.9
4,775,980	+		GFF4783	0.19	-2.0
4,775,980	+		GFF4783	0.19	-0.7
4,775,980	+		GFF4783	0.19	+0.6
4,775,980	+		GFF4783	0.19	-0.7
4,775,980	+		GFF4783	0.19	-0.3
4,775,983	-		GFF4783	0.19	-0.2
4,775,983	-		GFF4783	0.19	-1.2
4,775,983	-		GFF4783	0.19	-0.9
4,775,983	-		GFF4783	0.19	-0.5
4,775,983	-		GFF4783	0.19	-0.7
4,775,983	-		GFF4783	0.19	+0.5
4,775,983	-		GFF4783	0.19	-0.1
4,775,983	-		GFF4783	0.19	-1.3
4,775,983	-		GFF4783	0.19	+0.9
4,775,983	-		GFF4783	0.19	-0.4
4,775,983	-		GFF4783	0.19	+1.1
4,775,983	-		GFF4783	0.19	-2.2
4,775,983	-		GFF4783	0.19	-2.4
4,775,983	-		GFF4783	0.19	-2.9
4,775,983	-		GFF4783	0.19	+0.1
4,775,983	-		GFF4783	0.19	-2.2
4,775,983	-		GFF4783	0.19	-0.2
4,775,983	-		GFF4783	0.19	-0.7
4,775,983	-		GFF4783	0.19	+0.0
4,775,983	-		GFF4783	0.19	-0.9
4,775,983	-		GFF4783	0.19	-0.2
4,775,983	-		GFF4783	0.19	-0.6
4,775,988	-		GFF4783	0.19	-1.2
4,775,988	-		GFF4783	0.19	+0.7
4,775,988	-		GFF4783	0.19	-1.4
4,775,988	-		GFF4783	0.19	-0.3
4,775,988	-		GFF4783	0.19	-1.2
4,775,988	-		GFF4783	0.19	-0.7
4,775,988	-		GFF4783	0.19	-2.5
4,775,988	-		GFF4783	0.19	-0.6
4,775,988	-		GFF4783	0.19	-2.1
4,775,988	-		GFF4783	0.19	+0.2
4,775,988	-		GFF4783	0.19	+0.5
4,775,988	-		GFF4783	0.19	+0.5
4,775,988	-		GFF4783	0.19	-1.6
4,775,988	-		GFF4783	0.19	+0.7
4,775,988	-		GFF4783	0.19	-0.2
4,775,988	-		GFF4783	0.19	-0.8
4,775,988	-		GFF4783	0.19	-0.1
4,775,988	-		GFF4783	0.19	+1.0
4,775,988	-		GFF4783	0.19	-1.0
4,775,988	-		GFF4783	0.19	-0.7
4,775,988	-		GFF4783	0.19	-0.7
4,775,988	-		GFF4783	0.19	+0.3
4,775,988	-		GFF4783	0.19	-0.2
4,775,988	-		GFF4783	0.19	+0.2
4,775,988	-		GFF4783	0.19	-0.2
4,775,988	-		GFF4783	0.19	-0.1
4,775,988	-		GFF4783	0.19	-0.1
4,776,007	-		GFF4783	0.19	-0.4
4,776,012	+		GFF4783	0.19	-0.3
4,776,033	+		GFF4783	0.20	-0.9
4,776,041	-		GFF4783	0.20	-0.9
4,776,041	-		GFF4783	0.20	-0.5
4,776,041	-		GFF4783	0.20	-0.1
4,776,060	-		GFF4783	0.21	-0.8
4,776,077	-		GFF4783	0.21	-1.8
4,776,091	+		GFF4783	0.22	-1.7
4,776,091	-		GFF4783	0.22	-0.7
4,776,094	+		GFF4783	0.22	-0.9
4,776,099	-		GFF4783	0.22	-0.9
4,776,110	+		GFF4783	0.22	-2.1
4,776,110	+		GFF4783	0.22	-2.1
4,776,118	-		GFF4783	0.22	-1.5
4,776,118	-		GFF4783	0.22	-1.8
4,776,118	-		GFF4783	0.22	+0.0
4,776,118	-		GFF4783	0.22	-0.6
4,776,123	+		GFF4783	0.23	-0.9
4,776,123	-		GFF4783	0.23	-0.0
4,776,127	+		GFF4783	0.23	-0.5
4,776,137	+		GFF4783	0.23	+0.0
4,776,172	+		GFF4783	0.24	-1.6
4,776,178	+		GFF4783	0.24	-2.7
4,776,179	+		GFF4783	0.24	-2.0
4,776,179	+		GFF4783	0.24	-1.0
4,776,179	+		GFF4783	0.24	-0.9
4,776,179	+		GFF4783	0.24	+0.1
4,776,179	+		GFF4783	0.24	-1.0
4,776,183	+		GFF4783	0.24	+0.4
4,776,187	-		GFF4783	0.24	-1.0
4,776,187	-		GFF4783	0.24	-2.0
4,776,192	-		GFF4783	0.24	-1.3
4,776,192	-		GFF4783	0.24	-0.6
4,776,196	+		GFF4783	0.25	-0.4
4,776,197	-		GFF4783	0.25	+0.3
4,776,262	-		GFF4783	0.26	-1.8