Strain Fitness in Sphingobium sp. HT1-2 around GFF4745

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,741,894	+				-0.3
4,741,935	-				+1.6
4,741,938	+				+0.2
4,741,938	+				-1.0
4,741,938	+				+0.9
4,741,943	+				+0.2
4,741,943	+				-1.7
4,741,943	+				-2.2
4,741,943	+				-1.9
4,741,945	-				-0.4
4,741,946	-				+0.4
4,741,946	-				+0.6
4,741,948	+				+1.0
4,741,951	-				-1.3
4,741,951	-				+0.2
4,741,951	-				+0.7
4,741,951	-				-0.6
4,741,951	-				-0.7
4,741,951	-				-2.3
4,741,955	+				-1.1
4,741,956	-				-0.4
4,741,961	-				-0.3
4,741,984	+				+0.9
4,741,992	-				-1.0
4,741,998	+				+0.9
4,742,041	-		GFF4744	0.10	+1.1
4,742,058	+		GFF4744	0.12	-0.3
4,742,064	+		GFF4744	0.13	+0.2
4,742,065	-		GFF4744	0.13	+0.8
4,742,072	-		GFF4744	0.14	-1.8
4,742,072	-		GFF4744	0.14	+0.9
4,742,077	-		GFF4744	0.14	+0.3
4,742,096	+		GFF4744	0.17	-0.9
4,742,100	+		GFF4744	0.17	+1.5
4,742,108	-		GFF4744	0.18	+1.5
4,742,108	-		GFF4744	0.18	-0.4
4,742,109	-		GFF4744	0.18	-1.5
4,742,110	+		GFF4744	0.18	-1.1
4,742,167	-		GFF4744	0.24	+0.7
4,742,167	-		GFF4744	0.24	+0.3
4,742,169	+		GFF4744	0.25	+0.1
4,742,172	-		GFF4744	0.25	-0.5
4,742,177	-		GFF4744	0.25	-0.5
4,742,177	-		GFF4744	0.25	+0.4
4,742,182	+		GFF4744	0.26	-2.4
4,742,196	-		GFF4744	0.28	-0.5
4,742,207	+		GFF4744	0.29	-1.0
4,742,244	-		GFF4744	0.33	-2.0
4,742,272	+		GFF4744	0.36	+0.8
4,742,274	-		GFF4744	0.36	-0.3
4,742,288	-		GFF4744	0.38	-0.9
4,742,308	-		GFF4744	0.40	+1.1
4,742,330	-		GFF4744	0.42	-0.8
4,742,372	-		GFF4744	0.47	-1.0
4,742,382	-		GFF4744	0.48	+1.1
4,742,382	-		GFF4744	0.48	-1.1
4,742,391	-		GFF4744	0.49	+0.0
4,742,434	-		GFF4744	0.54	+0.0
4,742,435	+		GFF4744	0.54	-0.4
4,742,438	+		GFF4744	0.54	+0.0
4,742,443	-		GFF4744	0.55	-0.5
4,742,445	+		GFF4744	0.55	+0.1
4,742,475	-		GFF4744	0.58	-1.0
4,742,502	+		GFF4744	0.61	+0.6
4,742,502	+		GFF4744	0.61	+0.4
4,742,507	+		GFF4744	0.62	+0.2
4,742,507	+		GFF4744	0.62	+0.1
4,742,507	+		GFF4744	0.62	+0.3
4,742,510	-		GFF4744	0.62	-0.4
4,742,515	-		GFF4744	0.63	+0.5
4,742,515	-		GFF4744	0.63	+0.5
4,742,515	-		GFF4744	0.63	-1.9
4,742,515	-		GFF4744	0.63	-0.2
4,742,515	-		GFF4744	0.63	-1.0
4,742,525	-		GFF4744	0.64	-1.3
4,742,528	+		GFF4744	0.64	+0.3
4,742,578	-		GFF4744	0.70	+0.0
4,742,578	-		GFF4744	0.70	-0.8
4,742,615	+		GFF4744	0.74	-1.3
4,742,620	-		GFF4744	0.74	-2.0
4,742,631	-		GFF4744	0.75	-0.5
4,742,652	+		GFF4744	0.78	-0.5
4,742,679	+		GFF4744	0.81	+0.9
4,742,702	+		GFF4744	0.83	+1.2
4,742,702	+		GFF4744	0.83	+1.1
4,742,709	+		GFF4744	0.84	-0.0
4,742,719	+		GFF4744	0.85	+1.2
4,742,736	+		GFF4744	0.87	-1.9
4,742,736	+		GFF4744	0.87	+0.0
4,742,736	+		GFF4744	0.87	+0.3
4,742,736	+		GFF4744	0.87	-1.7
4,742,744	-		GFF4744	0.88	-1.1
4,742,744	-		GFF4744	0.88	+0.9
4,742,744	-		GFF4744	0.88	+0.2
4,742,744	-		GFF4744	0.88	-0.6
4,742,744	-		GFF4744	0.88	+0.5
4,742,744	-		GFF4744	0.88	+0.6
4,742,744	-		GFF4744	0.88	-0.4
4,742,744	-		GFF4744	0.88	-0.9
4,742,746	+		GFF4744	0.88	-2.5
4,742,754	-		GFF4744	0.89	+1.2
4,742,793	-				+0.6
4,742,814	+				-0.1
4,742,838	-				-1.8
4,742,849	+				-1.0
4,742,857	-				-1.3
4,742,911	+				-0.6
4,742,919	-				-0.3
4,742,927	+				-1.5
4,742,931	+				-1.0
4,742,939	-				-0.2
4,742,939	-				+1.1
4,742,939	-				-1.0
4,742,957	+				-1.8
4,742,989	-				-1.7
4,743,020	+				-1.9
4,743,048	-		GFF4745	0.11	-0.9
4,743,067	-		GFF4745	0.12	-0.9
4,743,069	+		GFF4745	0.12	-0.0
4,743,131	+		GFF4745	0.16	-0.2
4,743,164	+		GFF4745	0.17	-0.4
4,743,172	-		GFF4745	0.18	-0.1
4,743,182	+		GFF4745	0.18	-0.1
4,743,214	-		GFF4745	0.20	+1.1
4,743,262	+		GFF4745	0.23	+1.1
4,743,280	-		GFF4745	0.24	+0.3
4,743,303	+		GFF4745	0.25	+0.4
4,743,303	+		GFF4745	0.25	+1.8
4,743,311	-		GFF4745	0.26	+0.8
4,743,311	-		GFF4745	0.26	-0.6
4,743,328	-		GFF4745	0.27	+0.1
4,743,331	-		GFF4745	0.27	+0.6
4,743,337	+		GFF4745	0.27	-1.4
4,743,337	+		GFF4745	0.27	-2.2
4,743,345	-		GFF4745	0.28	+0.4
4,743,395	+		GFF4745	0.30	+0.1
4,743,403	-		GFF4745	0.31	-0.3
4,743,414	+		GFF4745	0.31	-1.4
4,743,414	+		GFF4745	0.31	+0.6
4,743,414	+		GFF4745	0.31	-0.2
4,743,422	-		GFF4745	0.32	-0.4
4,743,424	+		GFF4745	0.32	+0.5
4,743,424	+		GFF4745	0.32	-1.0
4,743,432	-		GFF4745	0.32	+0.1
4,743,449	+		GFF4745	0.33	+0.4
4,743,457	-		GFF4745	0.34	-0.7
4,743,469	-		GFF4745	0.35	-0.6
4,743,471	+		GFF4745	0.35	-0.9
4,743,479	-		GFF4745	0.35	+1.0
4,743,486	-		GFF4745	0.35	+0.3
4,743,501	+		GFF4745	0.36	+0.2
4,743,501	-		GFF4745	0.36	+0.5
4,743,509	-		GFF4745	0.37	+1.1
4,743,536	-		GFF4745	0.38	+1.1
4,743,558	-		GFF4745	0.39	+0.8
4,743,573	+		GFF4745	0.40	-1.7
4,743,575	+		GFF4745	0.40	-1.6
4,743,583	-		GFF4745	0.41	-0.8
4,743,598	-		GFF4745	0.42	-1.8
4,743,609	+		GFF4745	0.42	+0.5
4,743,681	-		GFF4745	0.46	+0.4
4,743,686	-		GFF4745	0.47	-1.7
4,743,727	-		GFF4745	0.49	-0.7
4,743,729	+		GFF4745	0.49	+0.9
4,743,729	+		GFF4745	0.49	-0.1
4,743,731	+		GFF4745	0.49	-0.9
4,743,732	-		GFF4745	0.49	-0.5
4,743,733	-		GFF4745	0.49	+1.2
4,743,737	-		GFF4745	0.49	-0.8
4,743,737	-		GFF4745	0.49	-0.7
4,743,762	-		GFF4745	0.51	-1.2
4,743,764	+		GFF4745	0.51	+0.4
4,743,764	+		GFF4745	0.51	-0.9
4,743,772	-		GFF4745	0.51	+0.3
4,743,772	-		GFF4745	0.51	-1.1
4,743,773	+		GFF4745	0.51	+0.7
4,743,788	+		GFF4745	0.52	+1.0
4,743,793	+		GFF4745	0.53	-0.1
4,743,793	+		GFF4745	0.53	-0.6
4,743,796	-		GFF4745	0.53	+2.7
4,743,797	+		GFF4745	0.53	-0.7
4,743,799	+		GFF4745	0.53	-1.0
4,743,812	-		GFF4745	0.54	-0.4
4,743,844	-		GFF4745	0.55	+0.5
4,743,860	+		GFF4745	0.56	-2.5
4,743,861	+		GFF4745	0.56	-2.1
4,743,869	-		GFF4745	0.57	-0.7
4,743,870	-		GFF4745	0.57	-1.3
4,743,895	+		GFF4745	0.58	+1.5
4,743,898	-		GFF4745	0.58	-0.1
4,743,903	-		GFF4745	0.59	-2.2
4,743,917	+		GFF4745	0.60	+0.1
4,743,917	+		GFF4745	0.60	-1.0
4,743,925	-		GFF4745	0.60	-0.4
4,743,926	-		GFF4745	0.60	-0.7
4,743,929	+		GFF4745	0.60	+0.3
4,743,929	+		GFF4745	0.60	-1.1
4,743,937	-		GFF4745	0.61	+1.2
4,743,960	+		GFF4745	0.62	-0.9
4,743,978	-		GFF4745	0.63	-1.0
4,743,978	-		GFF4745	0.63	+0.6
4,743,987	-		GFF4745	0.63	+1.1
4,743,987	-		GFF4745	0.63	-0.4
4,744,010	+		GFF4745	0.65	-0.9
4,744,032	+		GFF4745	0.66	+0.1
4,744,032	+		GFF4745	0.66	-0.8
4,744,040	-		GFF4745	0.66	-0.7
4,744,040	-		GFF4745	0.66	-1.0
4,744,041	-		GFF4745	0.66	+0.4
4,744,051	+		GFF4745	0.67	-0.2
4,744,051	+		GFF4745	0.67	-0.8
4,744,059	-		GFF4745	0.67	+0.3
4,744,067	+		GFF4745	0.68	+0.1
4,744,074	+		GFF4745	0.68	+1.7
4,744,082	-		GFF4745	0.69	-0.4
4,744,095	+		GFF4745	0.69	-0.5
4,744,119	-		GFF4745	0.71	+0.5
4,744,130	+		GFF4745	0.71	-0.7
4,744,156	-		GFF4745	0.73	+0.7
4,744,156	-		GFF4745	0.73	+0.2
4,744,184	+		GFF4745	0.74	-0.9
4,744,199	+		GFF4745	0.75	-1.9
4,744,240	+		GFF4745	0.78	-2.2
4,744,245	+		GFF4745	0.78	-0.5
4,744,248	+		GFF4745	0.78	+0.6
4,744,252	+		GFF4745	0.78	+0.2
4,744,252	+		GFF4745	0.78	-0.0
4,744,253	-		GFF4745	0.78	+0.7
4,744,257	+		GFF4745	0.79	-1.4
4,744,257	+		GFF4745	0.79	-1.1
4,744,257	+		GFF4745	0.79	-1.7
4,744,260	-		GFF4745	0.79	+1.0
4,744,265	-		GFF4745	0.79	-1.9
4,744,265	-		GFF4745	0.79	+0.2
4,744,267	-		GFF4745	0.79	+0.3
4,744,281	+		GFF4745	0.80	+0.2
4,744,281	+		GFF4745	0.80	-0.9
4,744,294	+		GFF4745	0.81	+0.1
4,744,330	-		GFF4745	0.83	-0.5
4,744,341	-		GFF4745	0.83	-0.9
4,744,344	-		GFF4745	0.83	+0.9
4,744,347	+		GFF4745	0.84	-1.9
4,744,366	-		GFF4745	0.85	+0.4
4,744,379	+		GFF4745	0.85	-0.1
4,744,392	+		GFF4745	0.86	-0.1
4,744,399	+		GFF4745	0.86	-1.1
4,744,443	+		GFF4745	0.89	-2.5
4,744,448	+		GFF4745	0.89	-0.9
4,744,459	-		GFF4745	0.90	+0.0
4,744,511	+				-0.3
4,744,533	+				+0.8
4,744,533	+				+0.2
4,744,538	+				+0.9
4,744,541	-				-0.1
4,744,546	+				+0.0
4,744,554	+				-0.5
4,744,566	+				-0.2
4,744,590	-				+0.4
4,744,641	-				-0.3
4,744,650	+				+0.2
4,744,658	-				+0.0
4,744,672	+				+0.3
4,744,688	+				-1.0
4,744,759	-				+0.1
4,744,762	+				-0.8
4,744,816	-				+0.4
4,744,837	-				-0.1
4,744,839	+				-0.3
4,744,842	-				+0.7
4,744,843	-				-0.3
4,744,866	-				+0.4
4,744,866	-				+0.5
4,744,871	+				+0.2
4,744,895	+				+1.2
4,744,896	+				+1.0
4,744,915	+				-0.1
4,744,931	-		GFF4746	0.10	-0.8
4,744,936	-		GFF4746	0.11	-0.4
4,744,976	+		GFF4746	0.12	-2.1
4,744,982	-		GFF4746	0.13	-0.6
4,744,993	+		GFF4746	0.13	-0.8
4,745,000	+		GFF4746	0.13	+0.9
4,745,006	+		GFF4746	0.14	+0.7
4,745,008	-		GFF4746	0.14	+0.2
4,745,008	-		GFF4746	0.14	+1.5
4,745,008	-		GFF4746	0.14	+0.2
4,745,015	+		GFF4746	0.14	-0.7
4,745,029	+		GFF4746	0.15	+1.0
4,745,040	+		GFF4746	0.15	-0.6
4,745,048	-		GFF4746	0.15	-1.0
4,745,068	+		GFF4746	0.16	-0.9
4,745,110	+		GFF4746	0.18	+0.8
4,745,122	+		GFF4746	0.18	-0.5
4,745,161	-		GFF4746	0.20	-1.9
4,745,164	+		GFF4746	0.20	-0.1
4,745,168	+		GFF4746	0.20	-0.1
4,745,172	-		GFF4746	0.21	+1.3
4,745,213	-		GFF4746	0.22	+0.8
4,745,218	+		GFF4746	0.23	+0.9
4,745,218	+		GFF4746	0.23	+0.3
4,745,218	+		GFF4746	0.23	-0.5
4,745,226	-		GFF4746	0.23	+0.7
4,745,226	-		GFF4746	0.23	+0.8
4,745,226	-		GFF4746	0.23	+0.0
4,745,226	-		GFF4746	0.23	+0.1
4,745,231	-		GFF4746	0.23	-0.3
4,745,231	-		GFF4746	0.23	-1.7
4,745,231	-		GFF4746	0.23	-0.6
4,745,234	+		GFF4746	0.23	+0.5
4,745,237	-		GFF4746	0.23	+0.8
4,745,241	-		GFF4746	0.24	+0.8
4,745,244	+		GFF4746	0.24	+0.2
4,745,244	+		GFF4746	0.24	-0.3
4,745,244	+		GFF4746	0.24	+0.2
4,745,252	-		GFF4746	0.24	-0.7
4,745,252	-		GFF4746	0.24	+0.5
4,745,252	-		GFF4746	0.24	-1.9
4,745,261	+		GFF4746	0.24	+0.3
4,745,261	+		GFF4746	0.24	+0.2
4,745,266	+		GFF4746	0.25	+0.5
4,745,266	+		GFF4746	0.25	-0.1
4,745,266	+		GFF4746	0.25	-0.1
4,745,266	+		GFF4746	0.25	-0.9
4,745,266	+		GFF4746	0.25	+0.4
4,745,269	-		GFF4746	0.25	-1.5
4,745,274	+		GFF4746	0.25	-0.5
4,745,274	-		GFF4746	0.25	+0.6
4,745,274	-		GFF4746	0.25	-0.8
4,745,274	-		GFF4746	0.25	+1.0
4,745,292	-		GFF4746	0.26	-0.4
4,745,316	-		GFF4746	0.27	+0.8
4,745,337	+		GFF4746	0.28	+0.2
4,745,339	+		GFF4746	0.28	+0.9
4,745,339	+		GFF4746	0.28	-0.2
4,745,339	+		GFF4746	0.28	-0.0
4,745,339	+		GFF4746	0.28	+0.4
4,745,339	+		GFF4746	0.28	+0.8
4,745,339	+		GFF4746	0.28	+0.5
4,745,347	-		GFF4746	0.28	+0.5
4,745,347	-		GFF4746	0.28	+0.6
4,745,347	-		GFF4746	0.28	-0.2
4,745,347	-		GFF4746	0.28	+0.5
4,745,347	-		GFF4746	0.28	+1.5
4,745,347	-		GFF4746	0.28	-0.1
4,745,347	-		GFF4746	0.28	-0.7
4,745,347	-		GFF4746	0.28	-0.3
4,745,349	+		GFF4746	0.28	-0.9
4,745,366	+		GFF4746	0.29	+1.2
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