Strain Fitness in Sphingobium sp. HT1-2 around GFF4733

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,731,348	+		GFF4731	0.86	-0.1
4,731,356	-		GFF4731	0.87	-2.4
4,731,361	-		GFF4731	0.87	+0.5
4,731,383	+		GFF4731	0.88	-1.6
4,731,427	-				-0.5
4,731,440	+				-0.4
4,731,445	+				-1.6
4,731,459	+				+0.3
4,731,459	+				-0.3
4,731,477	+				-0.4
4,731,507	+				+0.0
4,731,514	+				+1.1
4,731,645	-				-0.1
4,731,672	-				+0.7
4,731,702	-				+0.1
4,731,706	+				-0.2
4,731,712	+				+0.8
4,731,712	+				-1.5
4,731,712	+				+0.9
4,731,739	+				+1.2
4,731,746	-				-0.1
4,731,746	-				+2.0
4,731,751	-				+0.7
4,731,751	-				-0.6
4,731,762	+				+0.1
4,731,762	+				-1.5
4,731,762	+				+1.7
4,731,762	+				-2.1
4,731,767	+				+1.7
4,731,770	-				+0.3
4,731,770	-				-0.4
4,731,792	+				+0.8
4,731,802	+				+0.0
4,731,809	+				-1.5
4,731,809	+				-0.8
4,731,820	+				-1.6
4,731,827	-				-0.1
4,731,828	-				-0.6
4,731,828	-				+0.4
4,731,830	+				+0.2
4,731,830	+				+0.2
4,731,835	+				-0.9
4,731,846	-				-1.0
4,731,852	+				+0.5
4,731,857	+				-0.0
4,731,860	-				-0.0
4,731,862	-				+0.5
4,731,880	+				-0.3
4,731,882	+				+0.6
4,731,882	+				+0.2
4,731,882	+				+1.0
4,731,882	+				-1.4
4,731,882	+				-1.0
4,731,882	+				-1.5
4,731,882	+				-0.9
4,731,890	-				+0.4
4,731,890	-				-0.0
4,731,890	-				+0.4
4,731,890	-				+0.0
4,731,890	-				-1.9
4,731,890	-				-0.3
4,731,892	+				-1.8
4,731,892	+				+0.6
4,731,892	+				+1.2
4,731,895	-				-2.2
4,731,895	-				-0.6
4,731,895	-				-0.2
4,731,895	-				+0.4
4,731,900	-				-1.5
4,731,900	-				+0.3
4,731,900	-				-2.2
4,731,902	+				+1.1
4,731,921	+				-0.3
4,731,960	+				-2.1
4,731,968	-				-0.3
4,731,968	-				+1.4
4,731,970	+				-0.2
4,731,972	+				+0.1
4,731,978	-				+0.5
4,731,980	+				+0.4
4,731,980	+				-1.9
4,731,980	+				-1.9
4,731,996	+				-2.4
4,731,996	+				+0.5
4,731,996	+				-0.4
4,731,996	+				-0.4
4,731,996	+				-0.8
4,731,996	+				+0.5
4,732,004	-				+0.7
4,732,004	-				-0.1
4,732,004	-				-0.4
4,732,004	-				+0.8
4,732,014	+				-0.4
4,732,014	+				-2.9
4,732,014	+				-3.7
4,732,042	+		GFF4732	0.21	+0.4
4,732,045	-		GFF4732	0.22	-1.2
4,732,064	+		GFF4732	0.31	+0.2
4,732,064	+		GFF4732	0.31	+0.2
4,732,064	+		GFF4732	0.31	-0.5
4,732,064	+		GFF4732	0.31	-0.5
4,732,064	+		GFF4732	0.31	-0.0
4,732,072	-		GFF4732	0.35	-1.1
4,732,072	-		GFF4732	0.35	+0.6
4,732,072	-		GFF4732	0.35	+0.1
4,732,072	-		GFF4732	0.35	-0.1
4,732,090	+		GFF4732	0.44	-1.7
4,732,136	+		GFF4732	0.66	+0.7
4,732,136	+		GFF4732	0.66	-0.3
4,732,136	+		GFF4732	0.66	-0.2
4,732,136	+		GFF4732	0.66	-0.7
4,732,136	+		GFF4732	0.66	-1.7
4,732,136	+		GFF4732	0.66	+1.3
4,732,136	+		GFF4732	0.66	+0.5
4,732,136	+		GFF4732	0.66	+0.0
4,732,144	-		GFF4732	0.70	+0.8
4,732,144	-		GFF4732	0.70	-1.1
4,732,144	-		GFF4732	0.70	-1.2
4,732,146	-		GFF4732	0.70	+0.3
4,732,146	-		GFF4732	0.70	-0.1
4,732,182	+		GFF4732	0.88	-1.7
4,732,184	+		GFF4732	0.89	-0.8
4,732,197	+				+0.3
4,732,197	+				+0.6
4,732,239	+				+0.6
4,732,247	+				+0.6
4,732,317	+				-1.6
4,732,324	-				-1.7
4,732,335	+				-0.0
4,732,348	-				+0.9
4,732,376	+		GFF4733	0.14	-0.8
4,732,394	-		GFF4733	0.17	-0.2
4,732,395	+		GFF4733	0.17	-1.3
4,732,395	-		GFF4733	0.17	-0.6
4,732,403	-		GFF4733	0.19	+1.2
4,732,405	+		GFF4733	0.19	-1.4
4,732,413	-		GFF4733	0.20	+0.9
4,732,413	-		GFF4733	0.20	-1.4
4,732,455	-		GFF4733	0.27	-0.4
4,732,460	+		GFF4733	0.28	-0.7
4,732,467	-		GFF4733	0.29	-0.2
4,732,468	-		GFF4733	0.29	+0.6
4,732,474	-		GFF4733	0.30	+0.5
4,732,483	+		GFF4733	0.31	-1.2
4,732,483	+		GFF4733	0.31	+1.1
4,732,491	-		GFF4733	0.33	+0.2
4,732,491	-		GFF4733	0.33	+0.1
4,732,519	+		GFF4733	0.37	-1.8
4,732,522	-		GFF4733	0.38	-0.3
4,732,527	-		GFF4733	0.38	+0.1
4,732,527	-		GFF4733	0.38	-1.5
4,732,537	+		GFF4733	0.40	-1.3
4,732,540	+		GFF4733	0.41	+1.1
4,732,545	+		GFF4733	0.41	+0.8
4,732,550	+		GFF4733	0.42	+0.4
4,732,570	+		GFF4733	0.45	-0.2
4,732,578	-		GFF4733	0.47	-1.3
4,732,578	-		GFF4733	0.47	-0.1
4,732,585	-		GFF4733	0.48	-0.4
4,732,648	+		GFF4733	0.58	+0.2
4,732,648	+		GFF4733	0.58	+0.9
4,732,648	+		GFF4733	0.58	+0.1
4,732,648	+		GFF4733	0.58	-0.0
4,732,648	+		GFF4733	0.58	+0.1
4,732,648	+		GFF4733	0.58	+0.6
4,732,648	+		GFF4733	0.58	-1.5
4,732,656	-		GFF4733	0.59	-1.2
4,732,656	-		GFF4733	0.59	-0.2
4,732,656	-		GFF4733	0.59	-0.7
4,732,656	-		GFF4733	0.59	-2.3
4,732,656	-		GFF4733	0.59	+0.2
4,732,659	+		GFF4733	0.60	-0.5
4,732,677	+		GFF4733	0.62	-1.1
4,732,710	+		GFF4733	0.68	+0.5
4,732,718	-		GFF4733	0.69	+0.6
4,732,718	-		GFF4733	0.69	+0.5
4,732,718	-		GFF4733	0.69	-0.8
4,732,718	-		GFF4733	0.69	+1.2
4,732,764	-		GFF4733	0.76	-0.4
4,732,770	+		GFF4733	0.77	+1.4
4,732,770	+		GFF4733	0.77	-0.1
4,732,770	+		GFF4733	0.77	-0.1
4,732,770	+		GFF4733	0.77	+0.5
4,732,773	-		GFF4733	0.78	-0.0
4,732,777	-		GFF4733	0.79	-1.9
4,732,802	+		GFF4733	0.83	-0.4
4,732,804	-		GFF4733	0.83	+0.5
4,732,828	+		GFF4733	0.87	-1.2
4,732,833	+		GFF4733	0.88	-1.7
4,732,833	+		GFF4733	0.88	-0.4
4,732,833	+		GFF4733	0.88	+0.5
4,732,841	-		GFF4733	0.89	-0.5
4,732,841	-		GFF4733	0.89	-0.4
4,732,859	+				+1.2
4,732,865	-				+0.4
4,732,878	+				-2.5
4,732,878	+				+0.8
4,732,886	-				-1.0
4,732,886	-				+0.2
4,732,905	+				-0.9
4,732,912	+				-0.2
4,732,913	-				+0.8
4,732,967	+				+1.3
4,732,968	-				-1.8
4,732,975	-				+0.0
4,732,995	+				-0.1
4,732,995	+				+0.8
4,732,995	+				+1.1
4,732,995	+				+0.0
4,732,995	+				+1.3
4,732,995	+				-0.3
4,733,003	-				-0.2
4,733,003	-				+0.5
4,733,012	+				-1.0
4,733,012	-				-1.0
4,733,020	-				+0.9
4,733,046	+				+0.5
4,733,046	+				+0.0
4,733,046	+				+0.3
4,733,046	+				+0.0
4,733,046	+				+0.5
4,733,046	+				-0.0
4,733,054	-				+0.6
4,733,054	-				-0.1
4,733,054	-				+1.4
4,733,078	+				-1.4
4,733,081	-				-0.1
4,733,086	-				-0.0
4,733,101	+				+0.1
4,733,101	+				-0.1
4,733,106	+				-0.6
4,733,109	-				+1.2
4,733,124	+				-0.3
4,733,134	+				-0.2
4,733,142	-		GFF4734	0.10	+0.3
4,733,160	-		GFF4734	0.12	+0.2
4,733,179	+		GFF4734	0.13	-0.9
4,733,191	+		GFF4734	0.14	-2.2
4,733,199	+		GFF4734	0.15	+0.9
4,733,199	+		GFF4734	0.15	-0.5
4,733,221	+		GFF4734	0.16	-1.1
4,733,229	-		GFF4734	0.17	-2.1
4,733,252	+		GFF4734	0.18	+0.9
4,733,286	+		GFF4734	0.21	-1.2
4,733,286	+		GFF4734	0.21	-0.2
4,733,286	+		GFF4734	0.21	-0.4
4,733,294	-		GFF4734	0.22	-0.5
4,733,294	-		GFF4734	0.22	+0.9
4,733,333	+		GFF4734	0.24	+0.5
4,733,333	+		GFF4734	0.24	+0.2
4,733,341	-		GFF4734	0.25	-0.1
4,733,359	+		GFF4734	0.26	+0.3
4,733,397	+		GFF4734	0.29	-0.5
4,733,405	-		GFF4734	0.30	-1.0
4,733,432	-		GFF4734	0.32	-0.0
4,733,463	+		GFF4734	0.34	-0.8
4,733,467	+		GFF4734	0.34	-0.2
4,733,473	+		GFF4734	0.35	+0.6
4,733,476	-		GFF4734	0.35	-0.8
4,733,478	+		GFF4734	0.35	+0.4
4,733,478	+		GFF4734	0.35	-0.4
4,733,478	+		GFF4734	0.35	-1.9
4,733,486	-		GFF4734	0.36	-0.2
4,733,564	+		GFF4734	0.41	-0.5
4,733,564	+		GFF4734	0.41	+0.5
4,733,564	+		GFF4734	0.41	-0.9
4,733,564	+		GFF4734	0.41	+1.1
4,733,570	+		GFF4734	0.42	+0.0
4,733,572	-		GFF4734	0.42	-0.1
4,733,572	-		GFF4734	0.42	-0.2
4,733,572	-		GFF4734	0.42	+0.6
4,733,592	-		GFF4734	0.43	-0.0
4,733,594	+		GFF4734	0.43	-0.0
4,733,615	-		GFF4734	0.45	+0.1
4,733,617	+		GFF4734	0.45	-0.1
4,733,621	-		GFF4734	0.45	-0.5
4,733,621	-		GFF4734	0.45	-0.4
4,733,686	+		GFF4734	0.50	-1.3
4,733,690	-		GFF4734	0.50	-2.1
4,733,739	-		GFF4734	0.54	-0.4
4,733,766	+		GFF4734	0.56	-2.5
4,733,772	+		GFF4734	0.56	-0.6
4,733,775	-		GFF4734	0.57	+0.2
4,733,782	-		GFF4734	0.57	-1.0
4,733,783	+		GFF4734	0.57	-1.4
4,733,783	+		GFF4734	0.57	-0.3
4,733,788	+		GFF4734	0.58	-0.4
4,733,827	+		GFF4734	0.60	+1.4
4,733,827	+		GFF4734	0.60	+1.5
4,733,856	-		GFF4734	0.63	-1.7
4,733,879	-		GFF4734	0.64	+0.1
4,733,899	-		GFF4734	0.66	+1.0
4,733,899	-		GFF4734	0.66	+0.9
4,733,899	-		GFF4734	0.66	-0.7
4,733,901	+		GFF4734	0.66	-0.0
4,733,901	+		GFF4734	0.66	-0.7
4,733,901	+		GFF4734	0.66	+0.6
4,733,901	+		GFF4734	0.66	+0.6
4,733,901	+		GFF4734	0.66	-1.7
4,733,901	+		GFF4734	0.66	-0.6
4,733,909	-		GFF4734	0.66	-0.5
4,733,909	-		GFF4734	0.66	+0.7
4,733,909	-		GFF4734	0.66	-0.8
4,733,909	-		GFF4734	0.66	-0.5
4,733,909	-		GFF4734	0.66	+0.9
4,733,909	-		GFF4734	0.66	+1.2