Strain Fitness in Sphingobium sp. HT1-2 around GFF4729

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,725,697	-		GFF4727	0.74	-1.4
4,725,697	-		GFF4727	0.74	+0.3
4,725,700	+		GFF4727	0.74	-2.4
4,725,701	+		GFF4727	0.74	-0.1
4,725,707	-		GFF4727	0.75	-1.7
4,725,711	+		GFF4727	0.76	+0.8
4,725,711	+		GFF4727	0.76	+0.6
4,725,715	-		GFF4727	0.77	+2.0
4,725,715	-		GFF4727	0.77	+0.3
4,725,717	+		GFF4727	0.77	+0.0
4,725,717	+		GFF4727	0.77	+0.2
4,725,717	+		GFF4727	0.77	-0.8
4,725,719	-		GFF4727	0.77	+1.5
4,725,725	-		GFF4727	0.78	+0.0
4,725,725	-		GFF4727	0.78	-0.7
4,725,740	+		GFF4727	0.81	+0.4
4,725,760	-		GFF4727	0.84	+1.3
4,725,777	+		GFF4727	0.87	-0.1
4,725,797	-				+0.4
4,725,828	-				+1.8
4,725,834	+				+1.1
4,725,840	+				-0.6
4,725,848	-				+1.3
4,725,848	-				+1.3
4,725,868	-				+0.4
4,725,868	-				-1.1
4,725,893	-				-0.9
4,725,893	-				+0.5
4,725,903	+				-0.4
4,725,928	-				+1.0
4,725,939	-				+0.3
4,725,981	+				+0.3
4,726,000	-				+0.5
4,726,026	+				+0.0
4,726,034	-				-1.1
4,726,034	-				+1.8
4,726,034	-				+1.0
4,726,110	-				+1.0
4,726,110	-				+0.5
4,726,117	+				-1.9
4,726,118	+				-0.5
4,726,155	+				-0.5
4,726,157	+				-2.4
4,726,160	-				+1.1
4,726,187	-				+0.2
4,726,216	+				-1.0
4,726,285	-				+0.2
4,726,292	-				+0.5
4,726,296	-				-2.2
4,726,327	+		GFF4728	0.11	-0.2
4,726,333	-		GFF4728	0.13	+0.6
4,726,335	+		GFF4728	0.13	+0.0
4,726,335	-		GFF4728	0.13	-0.1
4,726,335	-		GFF4728	0.13	+0.6
4,726,375	-		GFF4728	0.23	-1.3
4,726,387	+		GFF4728	0.26	+0.6
4,726,460	+		GFF4728	0.45	+0.3
4,726,460	+		GFF4728	0.45	-1.5
4,726,468	-		GFF4728	0.47	-0.7
4,726,469	-		GFF4728	0.47	-2.1
4,726,469	-		GFF4728	0.47	-2.7
4,726,471	+		GFF4728	0.47	-0.1
4,726,499	+		GFF4728	0.54	+0.4
4,726,518	-		GFF4728	0.59	+0.3
4,726,522	+		GFF4728	0.60	-0.1
4,726,527	+		GFF4728	0.61	-1.7
4,726,527	+		GFF4728	0.61	-0.1
4,726,527	+		GFF4728	0.61	-0.1
4,726,527	+		GFF4728	0.61	+0.6
4,726,527	+		GFF4728	0.61	-0.2
4,726,527	+		GFF4728	0.61	+0.3
4,726,527	+		GFF4728	0.61	+1.4
4,726,527	+		GFF4728	0.61	+0.8
4,726,534	+		GFF4728	0.63	+1.0
4,726,535	-		GFF4728	0.63	+1.3
4,726,535	-		GFF4728	0.63	-0.8
4,726,535	-		GFF4728	0.63	+1.3
4,726,535	-		GFF4728	0.63	-0.4
4,726,535	-		GFF4728	0.63	-0.8
4,726,557	+		GFF4728	0.69	+0.3
4,726,571	+		GFF4728	0.72	-0.2
4,726,571	+		GFF4728	0.72	+0.2
4,726,571	+		GFF4728	0.72	-0.4
4,726,571	+		GFF4728	0.72	-1.3
4,726,571	+		GFF4728	0.72	+1.1
4,726,571	+		GFF4728	0.72	-2.2
4,726,571	-		GFF4728	0.72	+0.2
4,726,576	+		GFF4728	0.73	+0.0
4,726,576	+		GFF4728	0.73	-1.5
4,726,579	-		GFF4728	0.74	+0.5
4,726,579	-		GFF4728	0.74	-0.1
4,726,579	-		GFF4728	0.74	+1.6
4,726,579	-		GFF4728	0.74	-2.2
4,726,579	-		GFF4728	0.74	+0.7
4,726,579	-		GFF4728	0.74	-1.6
4,726,579	-		GFF4728	0.74	-0.9
4,726,579	-		GFF4728	0.74	+0.2
4,726,579	-		GFF4728	0.74	+1.7
4,726,579	-		GFF4728	0.74	-2.5
4,726,579	-		GFF4728	0.74	+0.2
4,726,579	-		GFF4728	0.74	-0.2
4,726,584	-		GFF4728	0.75	+0.2
4,726,584	-		GFF4728	0.75	+1.1
4,726,589	-		GFF4728	0.77	-0.1
4,726,593	+		GFF4728	0.78	-0.9
4,726,601	-		GFF4728	0.80	-1.7
4,726,629	-		GFF4728	0.87	-0.5
4,726,629	-		GFF4728	0.87	-1.3
4,726,693	+				+0.4
4,726,747	+				+0.7
4,726,747	+				-0.3
4,726,748	+				+0.7
4,726,748	+				-1.9
4,726,752	+				-0.3
4,726,761	-				+0.3
4,726,761	-				-0.3
4,726,761	-				-1.1
4,726,794	-				-2.6
4,726,822	-				-1.4
4,726,825	-				+0.2
4,726,859	-		GFF4729	0.10	-0.5
4,726,859	-		GFF4729	0.10	+0.1
4,726,917	+		GFF4729	0.14	-0.4
4,726,932	+		GFF4729	0.15	-0.0
4,726,932	+		GFF4729	0.15	+0.5
4,726,932	+		GFF4729	0.15	-0.6
4,726,940	-		GFF4729	0.16	+0.9
4,726,940	-		GFF4729	0.16	-1.8
4,726,940	-		GFF4729	0.16	-0.8
4,726,945	+		GFF4729	0.16	-1.3
4,726,945	+		GFF4729	0.16	-0.3
4,726,946	+		GFF4729	0.16	+1.1
4,726,960	+		GFF4729	0.17	-2.5
4,726,965	+		GFF4729	0.17	-1.3
4,727,007	+		GFF4729	0.20	+0.1
4,727,013	-		GFF4729	0.20	-1.0
4,727,022	+		GFF4729	0.21	-1.7
4,727,043	+		GFF4729	0.22	-0.4
4,727,082	+		GFF4729	0.25	-0.5
4,727,091	-		GFF4729	0.25	+0.4
4,727,105	+		GFF4729	0.26	+0.9
4,727,106	-		GFF4729	0.26	+0.2
4,727,113	-		GFF4729	0.26	+0.1
4,727,113	-		GFF4729	0.26	-0.9
4,727,113	-		GFF4729	0.26	-1.5
4,727,142	+		GFF4729	0.28	-0.1
4,727,144	+		GFF4729	0.28	+0.6
4,727,150	-		GFF4729	0.29	-1.1
4,727,150	-		GFF4729	0.29	+0.7
4,727,163	+		GFF4729	0.30	-0.3
4,727,163	+		GFF4729	0.30	-0.8
4,727,164	-		GFF4729	0.30	-0.2
4,727,171	-		GFF4729	0.30	-0.6
4,727,171	-		GFF4729	0.30	-0.8
4,727,171	-		GFF4729	0.30	-0.5
4,727,173	+		GFF4729	0.30	-0.4
4,727,181	-		GFF4729	0.31	+0.8
4,727,188	+		GFF4729	0.31	+0.2
4,727,232	+		GFF4729	0.34	+0.4
4,727,232	+		GFF4729	0.34	-0.5
4,727,276	-		GFF4729	0.37	+0.0
4,727,308	+		GFF4729	0.39	-0.3
4,727,313	+		GFF4729	0.39	+0.0
4,727,357	+		GFF4729	0.42	-0.1
4,727,366	-		GFF4729	0.43	-0.2
4,727,392	+		GFF4729	0.44	+1.0
4,727,400	+		GFF4729	0.45	-0.7
4,727,427	+		GFF4729	0.46	-0.4
4,727,465	+		GFF4729	0.49	-1.7
4,727,465	+		GFF4729	0.49	-1.5
4,727,465	+		GFF4729	0.49	+0.0
4,727,465	+		GFF4729	0.49	-0.5
4,727,473	-		GFF4729	0.49	+0.1
4,727,496	-		GFF4729	0.51	-1.7
4,727,496	-		GFF4729	0.51	-0.3
4,727,523	-		GFF4729	0.52	-0.0
4,727,537	+		GFF4729	0.53	-0.2
4,727,538	+		GFF4729	0.53	+0.2
4,727,543	+		GFF4729	0.54	+1.5
4,727,543	+		GFF4729	0.54	-1.1
4,727,546	-		GFF4729	0.54	+0.1
4,727,551	-		GFF4729	0.54	-3.2
4,727,575	-		GFF4729	0.56	-0.4
4,727,575	-		GFF4729	0.56	-0.6
4,727,575	-		GFF4729	0.56	+0.8
4,727,594	-		GFF4729	0.57	-0.8
4,727,594	-		GFF4729	0.57	-1.2
4,727,594	-		GFF4729	0.57	+0.3
4,727,596	-		GFF4729	0.57	-0.7
4,727,613	-		GFF4729	0.58	+0.8
4,727,623	-		GFF4729	0.59	+0.4
4,727,623	-		GFF4729	0.59	-0.3
4,727,690	-		GFF4729	0.63	-0.8
4,727,692	+		GFF4729	0.63	-0.8
4,727,692	+		GFF4729	0.63	-1.4
4,727,700	-		GFF4729	0.64	-2.9
4,727,700	-		GFF4729	0.64	-1.4
4,727,702	-		GFF4729	0.64	+1.1
4,727,702	-		GFF4729	0.64	-0.1
4,727,705	-		GFF4729	0.64	+1.7
4,727,730	-		GFF4729	0.66	+1.0
4,727,730	-		GFF4729	0.66	+1.1
4,727,732	+		GFF4729	0.66	-0.5
4,727,732	+		GFF4729	0.66	-0.5
4,727,732	+		GFF4729	0.66	+0.5
4,727,732	+		GFF4729	0.66	-1.7
4,727,740	-		GFF4729	0.66	+0.8
4,727,763	-		GFF4729	0.68	+0.6
4,727,781	+		GFF4729	0.69	-0.7
4,727,781	+		GFF4729	0.69	-1.1
4,727,781	+		GFF4729	0.69	+0.2
4,727,786	+		GFF4729	0.69	-2.0
4,727,789	-		GFF4729	0.69	-1.1
4,727,789	-		GFF4729	0.69	+0.7
4,727,789	-		GFF4729	0.69	-1.9
4,727,789	-		GFF4729	0.69	-0.7
4,727,795	-		GFF4729	0.70	-0.5
4,727,821	+		GFF4729	0.71	-0.5
4,727,829	-		GFF4729	0.72	-1.0
4,727,868	-		GFF4729	0.74	-0.3
4,727,924	+		GFF4729	0.78	+0.1
4,727,928	+		GFF4729	0.78	-1.5
4,727,930	+		GFF4729	0.78	-1.8
4,727,934	+		GFF4729	0.79	+0.3
4,727,934	+		GFF4729	0.79	+1.1
4,727,934	+		GFF4729	0.79	+1.0
4,727,934	+		GFF4729	0.79	-2.5
4,727,934	+		GFF4729	0.79	-0.2
4,727,942	-		GFF4729	0.79	+0.4
4,727,942	-		GFF4729	0.79	-2.5
4,727,942	-		GFF4729	0.79	-1.7
4,727,942	-		GFF4729	0.79	+0.9
4,727,942	-		GFF4729	0.79	-1.7
4,727,942	-		GFF4729	0.79	-0.2
4,727,942	-		GFF4729	0.79	-0.1
4,727,942	-		GFF4729	0.79	-0.1
4,727,942	-		GFF4729	0.79	+0.0
4,727,957	+		GFF4729	0.80	-0.1
4,727,959	+		GFF4729	0.80	-1.9
4,727,959	+		GFF4729	0.80	-2.2
4,727,967	-		GFF4729	0.81	-0.8
4,727,967	-		GFF4729	0.81	-0.0
4,727,992	+		GFF4729	0.82	+0.6
4,727,992	+		GFF4729	0.82	+0.6
4,727,992	+		GFF4729	0.82	-0.3
4,727,992	+		GFF4729	0.82	+0.3
4,727,992	+		GFF4729	0.82	-0.9
4,727,992	+		GFF4729	0.82	-0.5
4,727,999	+		GFF4729	0.83	-0.1
4,728,000	-		GFF4729	0.83	+0.9
4,728,000	-		GFF4729	0.83	-1.1
4,728,007	-		GFF4729	0.83	+0.2
4,728,007	-		GFF4729	0.83	-1.2
4,728,007	-		GFF4729	0.83	-0.5
4,728,007	-		GFF4729	0.83	-1.9
4,728,007	-		GFF4729	0.83	+0.8
4,728,007	-		GFF4729	0.83	-0.1
4,728,009	+		GFF4729	0.83	+0.5
4,728,018	+		GFF4729	0.84	+0.2
4,728,024	+		GFF4729	0.84	+0.4
4,728,068	+		GFF4729	0.87	-1.0
4,728,076	-		GFF4729	0.88	+0.1
4,728,076	-		GFF4729	0.88	-0.9
4,728,089	+		GFF4729	0.88	+0.3
4,728,155	+				-0.7
4,728,173	-				+1.0
4,728,175	+				-2.4
4,728,178	-				-0.4
4,728,193	+				-0.4
4,728,193	+				-0.1
4,728,206	-				-0.6
4,728,312	-				-0.2
4,728,329	-				-0.4
4,728,335	+				-1.8
4,728,349	-				+0.6
4,728,351	+				+1.0
4,728,364	+				-2.4
4,728,364	+				-0.7
4,728,364	+				+1.1
4,728,364	+				-0.4
4,728,364	+				+0.5
4,728,372	-				+0.3
4,728,375	-				+0.4
4,728,375	-				-0.3
4,728,420	-		GFF4730	0.10	+0.0
4,728,420	-		GFF4730	0.10	-0.9
4,728,454	+		GFF4730	0.12	-0.1
4,728,454	-		GFF4730	0.12	+0.5
4,728,463	+		GFF4730	0.13	-0.0
4,728,490	-		GFF4730	0.15	+0.3
4,728,490	-		GFF4730	0.15	-0.1
4,728,495	+		GFF4730	0.15	+0.5
4,728,498	-		GFF4730	0.15	+0.7
4,728,503	-		GFF4730	0.16	+0.5
4,728,505	+		GFF4730	0.16	-1.8
4,728,505	+		GFF4730	0.16	+1.0
4,728,513	-		GFF4730	0.16	-0.1
4,728,513	-		GFF4730	0.16	-1.0
4,728,520	+		GFF4730	0.17	-0.2
4,728,525	+		GFF4730	0.17	-0.4
4,728,526	+		GFF4730	0.17	-2.9
4,728,533	-		GFF4730	0.18	-0.0
4,728,536	+		GFF4730	0.18	+0.2
4,728,544	-		GFF4730	0.19	-0.5
4,728,553	+		GFF4730	0.19	+0.1
4,728,553	+		GFF4730	0.19	+1.0
4,728,559	-		GFF4730	0.20	-0.6
4,728,561	-		GFF4730	0.20	+0.3
4,728,569	-		GFF4730	0.20	+0.6
4,728,582	+		GFF4730	0.21	-1.7
4,728,592	+		GFF4730	0.22	+0.9
4,728,595	-		GFF4730	0.22	-0.2
4,728,595	-		GFF4730	0.22	-1.7
4,728,595	-		GFF4730	0.22	+0.7
4,728,616	-		GFF4730	0.24	-0.9
4,728,618	+		GFF4730	0.24	-1.5
4,728,625	+		GFF4730	0.24	-1.0
4,728,626	-		GFF4730	0.24	-2.0
4,728,633	-		GFF4730	0.25	-0.5
4,728,633	-		GFF4730	0.25	-0.3
4,728,633	-		GFF4730	0.25	-0.0
4,728,633	-		GFF4730	0.25	-1.4
4,728,657	+		GFF4730	0.27	+0.5
4,728,657	+		GFF4730	0.27	+0.1
4,728,657	-		GFF4730	0.27	+1.1
4,728,665	-		GFF4730	0.27	-1.1
4,728,673	+		GFF4730	0.28	+0.5
4,728,699	-		GFF4730	0.29	-2.5
4,728,701	+		GFF4730	0.30	+1.7
4,728,701	+		GFF4730	0.30	-0.3
4,728,708	+		GFF4730	0.30	+0.1
4,728,709	-		GFF4730	0.30	-0.3
4,728,721	-		GFF4730	0.31	+0.5
4,728,724	-		GFF4730	0.31	-1.1
4,728,752	+		GFF4730	0.33	-0.8
4,728,778	+		GFF4730	0.35	-0.7
4,728,793	-		GFF4730	0.36	-0.0
4,728,817	+		GFF4730	0.38	+0.4
4,728,822	+		GFF4730	0.38	+0.6
4,728,837	+		GFF4730	0.39	-1.5
4,728,838	+		GFF4730	0.39	-0.9
4,728,845	+		GFF4730	0.40	+0.3
4,728,847	-		GFF4730	0.40	+0.7
4,728,853	-		GFF4730	0.40	+0.4
4,728,921	-		GFF4730	0.45	-0.1
4,728,924	+		GFF4730	0.45	+0.0
4,728,937	-		GFF4730	0.46	+0.2
4,728,942	-		GFF4730	0.46	+0.1
4,728,952	-		GFF4730	0.47	-0.5
4,728,999	-		GFF4730	0.50	-0.2
4,729,001	+		GFF4730	0.51	-0.1
4,729,010	+		GFF4730	0.51	+1.0
4,729,013	-		GFF4730	0.51	-1.3
4,729,018	-		GFF4730	0.52	+0.9
4,729,018	-		GFF4730	0.52	-1.1
4,729,038	+		GFF4730	0.53	-1.1
4,729,048	+		GFF4730	0.54	-1.2
4,729,056	-		GFF4730	0.54	-0.8
4,729,057	+		GFF4730	0.55	+0.5
4,729,072	+		GFF4730	0.56	+0.0
4,729,080	-		GFF4730	0.56	-0.1
4,729,082	+		GFF4730	0.56	-0.2
4,729,089	+		GFF4730	0.57	-2.0
4,729,097	-		GFF4730	0.57	-0.0
4,729,118	+		GFF4730	0.59	+0.3
4,729,131	-		GFF4730	0.60	-1.5
4,729,133	+		GFF4730	0.60	+0.2
4,729,137	+		GFF4730	0.60	+1.1
4,729,139	+		GFF4730	0.60	+1.2
4,729,139	+		GFF4730	0.60	+1.1
4,729,141	-		GFF4730	0.60	-1.9
4,729,147	-		GFF4730	0.61	-0.3
4,729,155	-		GFF4730	0.61	+0.7
4,729,178	-		GFF4730	0.63	-0.5
4,729,232	+		GFF4730	0.67	-0.1
4,729,232	-		GFF4730	0.67	-0.7
4,729,232	-		GFF4730	0.67	+0.6
4,729,247	+		GFF4730	0.68	-0.1
4,729,247	+		GFF4730	0.68	-0.9
4,729,249	+		GFF4730	0.68	+1.1
4,729,249	+		GFF4730	0.68	-0.8
4,729,249	+		GFF4730	0.68	-1.7
4,729,249	+		GFF4730	0.68	+0.3
4,729,249	+		GFF4730	0.68	-0.1
4,729,249	+		GFF4730	0.68	-0.3
4,729,249	+		GFF4730	0.68	-0.1
4,729,249	+		GFF4730	0.68	-1.3
4,729,249	+		GFF4730	0.68	-1.0
4,729,249	+		GFF4730	0.68	-0.2
4,729,254	+		GFF4730	0.68	+0.7
4,729,255	-		GFF4730	0.68	-0.2
4,729,255	-		GFF4730	0.68	-2.0
4,729,255	-		GFF4730	0.68	+0.3
4,729,255	-		GFF4730	0.68	-0.1
4,729,257	-		GFF4730	0.68	+0.4
4,729,257	-		GFF4730	0.68	-1.3
4,729,257	-		GFF4730	0.68	-0.2
4,729,257	-		GFF4730	0.68	+0.3
4,729,257	-		GFF4730	0.68	-0.1
4,729,257	-		GFF4730	0.68	-2.1
4,729,257	-		GFF4730	0.68	-0.0
4,729,262	-		GFF4730	0.69	-1.9
4,729,262	-		GFF4730	0.69	+0.6
4,729,262	-		GFF4730	0.69	+0.8
4,729,262	-		GFF4730	0.69	+0.2
4,729,272	-		GFF4730	0.70	-0.2