Strain Fitness in Sphingobium sp. HT1-2 around GFF4712

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,711,659	+		GFF4710	0.44	-0.3
4,711,680	-		GFF4710	0.47	-1.5
4,711,697	-		GFF4710	0.50	+0.6
4,711,697	-		GFF4710	0.50	-0.7
4,711,729	-		GFF4710	0.55	+0.2
4,711,735	+		GFF4710	0.56	-0.3
4,711,743	-		GFF4710	0.57	-1.0
4,711,746	+		GFF4710	0.57	-0.6
4,711,754	+		GFF4710	0.59	-1.5
4,711,771	-		GFF4710	0.61	-0.3
4,711,840	-		GFF4710	0.72	+0.7
4,711,847	-		GFF4710	0.73	+0.7
4,711,886	-		GFF4710	0.79	-0.9
4,711,889	-		GFF4710	0.80	-0.9
4,711,899	-		GFF4710	0.81	+1.6
4,711,927	+		GFF4710	0.86	-0.1
4,711,938	+		GFF4710	0.87	-1.7
4,711,943	+		GFF4710	0.88	+0.8
4,711,943	+		GFF4710	0.88	+0.7
4,711,943	+		GFF4710	0.88	-0.0
4,711,949	-		GFF4710	0.89	-1.0
4,711,951	-		GFF4710	0.89	+0.2
4,711,951	-		GFF4710	0.89	+0.0
4,711,951	-		GFF4710	0.89	+0.0
4,711,958	-				-1.0
4,711,958	-				+1.3
4,711,958	-				-2.0
4,711,958	-				-0.7
4,711,958	-				+1.5
4,711,958	-				+0.6
4,711,958	-				-1.0
4,711,958	-				+0.2
4,711,958	-				-0.2
4,711,958	-				-0.3
4,711,958	-				+0.8
4,711,958	-				-0.7
4,711,958	-				-1.5
4,711,993	-				+0.8
4,712,065	+				+0.3
4,712,078	+				+1.5
4,712,086	-				+0.1
4,712,102	+				-0.1
4,712,143	+				+1.0
4,712,143	+				-0.6
4,712,143	+				+0.4
4,712,143	+				+0.2
4,712,151	-				+0.1
4,712,151	-				-0.1
4,712,151	-				-1.0
4,712,153	+				+1.6
4,712,166	-				+0.3
4,712,176	-				-2.9
4,712,176	-				+0.7
4,712,186	-				-0.6
4,712,189	+				+0.6
4,712,189	+				-0.3
4,712,189	+				-1.5
4,712,191	-				-0.5
4,712,196	+				-0.7
4,712,224	+		GFF4711	0.10	-1.9
4,712,231	+		GFF4711	0.12	-0.5
4,712,231	+		GFF4711	0.12	-1.5
4,712,231	+		GFF4711	0.12	+0.4
4,712,232	-		GFF4711	0.12	+0.9
4,712,232	-		GFF4711	0.12	+0.1
4,712,234	-		GFF4711	0.12	+0.1
4,712,239	-		GFF4711	0.13	-0.3
4,712,255	-		GFF4711	0.17	+1.1
4,712,273	-		GFF4711	0.21	+0.9
4,712,273	-		GFF4711	0.21	+0.5
4,712,283	+		GFF4711	0.23	-0.5
4,712,289	-		GFF4711	0.24	-0.6
4,712,300	+		GFF4711	0.26	-0.8
4,712,302	+		GFF4711	0.27	+0.2
4,712,302	+		GFF4711	0.27	+0.3
4,712,302	+		GFF4711	0.27	-0.2
4,712,302	+		GFF4711	0.27	+0.0
4,712,308	-		GFF4711	0.28	-1.1
4,712,310	-		GFF4711	0.28	+0.8
4,712,310	-		GFF4711	0.28	-0.5
4,712,310	-		GFF4711	0.28	+0.1
4,712,310	-		GFF4711	0.28	-1.2
4,712,329	+		GFF4711	0.32	-0.6
4,712,344	-		GFF4711	0.35	-0.3
4,712,348	+		GFF4711	0.36	-0.5
4,712,359	-		GFF4711	0.39	+1.3
4,712,373	+		GFF4711	0.42	+0.3
4,712,380	+		GFF4711	0.43	-0.4
4,712,380	+		GFF4711	0.43	+0.5
4,712,380	+		GFF4711	0.43	+0.2
4,712,388	-		GFF4711	0.45	+0.1
4,712,397	+		GFF4711	0.47	+0.0
4,712,413	-		GFF4711	0.50	-1.0
4,712,442	-		GFF4711	0.56	+0.4
4,712,486	-		GFF4711	0.65	-0.0
4,712,507	-		GFF4711	0.70	+0.8
4,712,584	+		GFF4711	0.86	+1.9
4,712,584	+		GFF4711	0.86	-0.5
4,712,584	+		GFF4711	0.86	+1.5
4,712,592	-		GFF4711	0.87	-0.4
4,712,592	-		GFF4711	0.87	+0.1
4,712,592	-		GFF4711	0.87	-0.7
4,712,592	-		GFF4711	0.87	+1.0
4,712,592	-		GFF4711	0.87	-0.5
4,712,604	-				+0.9
4,712,611	+				-0.2
4,712,611	+				+0.8
4,712,611	+				+0.1
4,712,611	+				-0.9
4,712,611	+				+0.2
4,712,611	+				+1.1
4,712,612	+				+0.8
4,712,619	-				+0.1
4,712,619	-				-1.3
4,712,619	-				+0.3
4,712,619	-				+0.2
4,712,619	-				+2.0
4,712,619	-				+1.3
4,712,619	-				-0.8
4,712,619	-				+0.9
4,712,623	+				-0.1
4,712,631	-				+0.3
4,712,640	+				+0.9
4,712,640	+				-0.3
4,712,640	+				+1.0
4,712,648	-				+0.4
4,712,648	-				-0.1
4,712,648	-				-1.0
4,712,699	-		GFF4712	0.14	-0.5
4,712,699	-		GFF4712	0.14	-1.3
4,712,710	+		GFF4712	0.18	+0.7
4,712,724	+		GFF4712	0.22	+0.2
4,712,724	+		GFF4712	0.22	+0.3
4,712,732	-		GFF4712	0.25	-0.6
4,712,745	+		GFF4712	0.29	+0.8
4,712,748	-		GFF4712	0.30	-0.6
4,712,766	+		GFF4712	0.36	-1.3
4,712,774	-		GFF4712	0.38	-0.0
4,712,787	+		GFF4712	0.42	+0.2
4,712,816	-		GFF4712	0.52	-0.2
4,712,845	+		GFF4712	0.61	+1.4
4,712,885	+		GFF4712	0.74	+0.7
4,712,885	+		GFF4712	0.74	-1.0
4,712,885	+		GFF4712	0.74	-2.0
4,712,893	-		GFF4712	0.76	-0.6
4,712,893	-		GFF4712	0.76	+0.1
4,712,893	-		GFF4712	0.76	-1.6
4,712,924	+		GFF4712	0.86	-0.6
4,712,934	+		GFF4712	0.89	-0.5
4,712,942	-				+1.5
4,712,942	-				-1.7
4,712,942	-				+0.8
4,712,951	-				+0.7
4,712,960	+				+1.6
4,712,960	+				+0.7
4,712,961	-				-1.6
4,712,965	+				-2.2
4,712,965	+				-1.3
4,712,965	+				-0.9
4,712,968	-				+0.5
4,712,968	-				+0.4
4,712,970	+				+0.5
4,712,973	-				-1.0
4,712,973	-				-0.7
4,712,984	-				+0.6
4,712,986	-				-1.9
4,713,001	-				+0.7
4,713,013	+				+0.6
4,713,014	+				+1.3
4,713,021	-				-0.4
4,713,044	+				+0.3
4,713,052	-				+0.1
4,713,052	-				-1.1
4,713,064	-				+0.3
4,713,076	+				-1.1
4,713,076	+				+0.0
4,713,082	+				-0.4
4,713,083	-				+0.5
4,713,084	-				-0.0
4,713,096	+				+0.2
4,713,098	+				-0.2
4,713,100	-				+1.0
4,713,100	-				-1.9
4,713,106	+				-0.3
4,713,106	+				-1.1
4,713,106	+				-0.4
4,713,106	+				+0.3
4,713,106	+				+0.6
4,713,114	-				+0.6
4,713,114	-				-0.6
4,713,114	-				-1.5
4,713,114	-				-0.9
4,713,144	+				+0.2
4,713,188	+				-0.2
4,713,188	+				+0.7
4,713,188	-				+1.1
4,713,196	-				-0.2
4,713,196	-				-0.3
4,713,196	-				+0.5
4,713,204	+				-1.4
4,713,207	-				+0.3
4,713,238	+				+1.1
4,713,246	-				+0.2
4,713,246	-				+1.0
4,713,261	+				-0.1
4,713,261	+				+1.3
4,713,269	-				-0.6
4,713,269	-				-0.3
4,713,328	+				+0.6
4,713,328	+				-0.9
4,713,328	+				+0.6
4,713,328	+				+0.4
4,713,328	+				-0.3
4,713,328	+				+0.7
4,713,328	+				+1.1
4,713,328	+				-1.3
4,713,328	+				-0.3
4,713,328	+				-0.1
4,713,328	+				+0.5
4,713,328	+				+0.3
4,713,328	+				-0.8
4,713,328	+				+0.9
4,713,328	+				+0.1
4,713,328	+				-2.3
4,713,328	+				+1.1
4,713,328	+				+0.7
4,713,336	-				+0.8
4,713,336	-				+0.6
4,713,336	-				+0.2
4,713,336	-				+0.3
4,713,336	-				+0.1
4,713,336	-				-0.8
4,713,336	-				+1.2
4,713,336	-				+0.6
4,713,336	-				-0.8
4,713,336	-				+0.5
4,713,336	-				+1.3
4,713,336	-				-1.1
4,713,336	-				+0.7
4,713,336	-				+0.9
4,713,336	-				+0.2
4,713,336	-				-0.1
4,713,336	-				-0.4
4,713,336	-				+0.8
4,713,352	-		GFF4713	0.10	-0.8
4,713,352	-		GFF4713	0.10	+0.8
4,713,378	+		GFF4713	0.11	-1.8
4,713,450	-		GFF4713	0.14	-0.2
4,713,451	+		GFF4713	0.14	-1.7
4,713,451	+		GFF4713	0.14	-0.2
4,713,451	+		GFF4713	0.14	+0.4
4,713,451	+		GFF4713	0.14	-0.6
4,713,459	-		GFF4713	0.15	-0.7
4,713,459	-		GFF4713	0.15	+0.2
4,713,459	-		GFF4713	0.15	-0.3
4,713,459	-		GFF4713	0.15	-0.5
4,713,459	-		GFF4713	0.15	+0.3
4,713,459	-		GFF4713	0.15	-0.4
4,713,459	-		GFF4713	0.15	+0.4
4,713,459	-		GFF4713	0.15	-0.7
4,713,494	+		GFF4713	0.16	-2.2
4,713,511	+		GFF4713	0.17	+1.0
4,713,512	-		GFF4713	0.17	-0.7
4,713,517	+		GFF4713	0.17	-0.9
4,713,518	-		GFF4713	0.17	-0.7
4,713,519	-		GFF4713	0.17	+0.3
4,713,519	-		GFF4713	0.17	+0.7
4,713,519	-		GFF4713	0.17	-0.5
4,713,519	-		GFF4713	0.17	+1.6
4,713,519	-		GFF4713	0.17	-0.5
4,713,521	+		GFF4713	0.17	-0.0
4,713,521	+		GFF4713	0.17	-1.1
4,713,529	-		GFF4713	0.18	-0.4
4,713,546	+		GFF4713	0.18	-0.4
4,713,551	+		GFF4713	0.18	-0.3
4,713,553	+		GFF4713	0.18	-1.0
4,713,564	+		GFF4713	0.19	-0.8
4,713,572	-		GFF4713	0.19	+1.5
4,713,576	+		GFF4713	0.19	+0.0
4,713,604	-		GFF4713	0.21	-0.3
4,713,609	+		GFF4713	0.21	-1.0
4,713,610	+		GFF4713	0.21	+0.6
4,713,611	-		GFF4713	0.21	-2.1
4,713,620	+		GFF4713	0.21	+0.0
4,713,628	-		GFF4713	0.21	+1.3
4,713,643	-		GFF4713	0.22	+0.2
4,713,662	-		GFF4713	0.23	+0.8
4,713,673	+		GFF4713	0.23	+0.4
4,713,692	+		GFF4713	0.24	-0.1
4,713,706	-		GFF4713	0.25	+0.5
4,713,722	-		GFF4713	0.25	+0.2
4,713,730	-		GFF4713	0.26	-0.8
4,713,748	+		GFF4713	0.26	+1.1
4,713,751	-		GFF4713	0.26	-0.3
4,713,751	-		GFF4713	0.26	-0.5
4,713,756	-		GFF4713	0.27	-1.6
4,713,756	-		GFF4713	0.27	-0.2
4,713,783	+		GFF4713	0.28	-0.6
4,713,783	+		GFF4713	0.28	-1.3
4,713,796	-		GFF4713	0.28	+0.3
4,713,799	-		GFF4713	0.28	-0.7
4,713,806	+		GFF4713	0.29	+0.1
4,713,854	+		GFF4713	0.31	-0.1
4,713,876	+		GFF4713	0.31	+0.7
4,713,950	+		GFF4713	0.34	+1.1
4,713,959	+		GFF4713	0.35	-0.1
4,713,964	+		GFF4713	0.35	-1.2