Strain Fitness in Sphingobium sp. HT1-2 around GFF4615

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,608,820	+		GFF4613	0.65	-0.7
4,608,822	+		GFF4613	0.66	-0.0
4,608,823	-		GFF4613	0.66	-1.3
4,608,827	+		GFF4613	0.67	-3.1
4,608,830	-		GFF4613	0.67	-1.4
4,608,835	-		GFF4613	0.68	+0.4
4,608,835	-		GFF4613	0.68	-0.1
4,608,867	-		GFF4613	0.74	-0.8
4,608,873	-		GFF4613	0.75	-2.5
4,608,899	+		GFF4613	0.80	+0.3
4,608,899	+		GFF4613	0.80	-2.1
4,608,899	+		GFF4613	0.80	-2.5
4,608,902	-		GFF4613	0.81	+0.6
4,608,904	+		GFF4613	0.81	+0.6
4,608,904	+		GFF4613	0.81	+0.9
4,608,907	-		GFF4613	0.81	-0.2
4,608,907	-		GFF4613	0.81	+0.6
4,608,907	-		GFF4613	0.81	+0.1
4,608,907	-		GFF4613	0.81	+0.9
4,608,907	-		GFF4613	0.81	-0.9
4,608,912	-		GFF4613	0.82	-0.2
4,608,917	-		GFF4613	0.83	+1.1
4,608,919	+		GFF4613	0.84	-2.0
4,608,919	+		GFF4613	0.84	-2.7
4,608,927	-		GFF4613	0.85	-0.7
4,608,927	-		GFF4613	0.85	-0.0
4,608,928	-		GFF4613	0.85	-0.3
4,608,928	-		GFF4613	0.85	-0.0
4,608,935	-		GFF4613	0.87	-0.4
4,608,968	+				-1.8
4,608,969	-				-1.8
4,608,971	-				-0.3
4,608,976	-				-0.2
4,609,010	+				-0.3
4,609,010	+				+0.0
4,609,010	+				-1.4
4,609,014	+				-1.2
4,609,018	-				-1.9
4,609,056	+				+0.7
4,609,056	+				+0.3
4,609,056	+				-0.5
4,609,064	-				-0.5
4,609,064	-				+0.1
4,609,064	-				-1.6
4,609,064	-				-0.7
4,609,064	-				+0.8
4,609,090	-				-2.8
4,609,101	+				+1.1
4,609,101	+				-0.0
4,609,101	+				-1.3
4,609,101	+				-1.1
4,609,109	-				-0.8
4,609,109	-				+0.4
4,609,149	-				+1.4
4,609,183	-		GFF4614	0.10	-1.9
4,609,193	-		GFF4614	0.12	+0.0
4,609,214	-		GFF4614	0.15	-0.7
4,609,216	+		GFF4614	0.15	+0.5
4,609,216	+		GFF4614	0.15	+0.0
4,609,216	+		GFF4614	0.15	+0.2
4,609,216	+		GFF4614	0.15	-0.2
4,609,216	+		GFF4614	0.15	-3.3
4,609,219	-		GFF4614	0.16	-0.1
4,609,221	+		GFF4614	0.16	-0.6
4,609,221	+		GFF4614	0.16	+0.0
4,609,221	+		GFF4614	0.16	-0.6
4,609,221	+		GFF4614	0.16	+0.0
4,609,221	+		GFF4614	0.16	-1.5
4,609,221	+		GFF4614	0.16	-1.0
4,609,221	+		GFF4614	0.16	-0.1
4,609,221	+		GFF4614	0.16	-0.2
4,609,221	+		GFF4614	0.16	+0.0
4,609,221	+		GFF4614	0.16	-2.3
4,609,221	+		GFF4614	0.16	-1.6
4,609,224	-		GFF4614	0.17	-1.5
4,609,224	-		GFF4614	0.17	-1.9
4,609,228	+		GFF4614	0.17	-2.5
4,609,229	-		GFF4614	0.17	+0.8
4,609,229	-		GFF4614	0.17	+0.2
4,609,229	-		GFF4614	0.17	+0.3
4,609,229	-		GFF4614	0.17	-1.7
4,609,229	-		GFF4614	0.17	-1.9
4,609,229	-		GFF4614	0.17	+0.3
4,609,229	-		GFF4614	0.17	-0.7
4,609,229	-		GFF4614	0.17	-1.7
4,609,229	-		GFF4614	0.17	-0.3
4,609,229	-		GFF4614	0.17	+0.4
4,609,229	-		GFF4614	0.17	+0.9
4,609,238	+		GFF4614	0.19	+0.7
4,609,239	+		GFF4614	0.19	+0.4
4,609,239	+		GFF4614	0.19	-0.2
4,609,246	-		GFF4614	0.20	+0.4
4,609,253	+		GFF4614	0.21	+0.5
4,609,253	+		GFF4614	0.21	-1.6
4,609,253	+		GFF4614	0.21	+1.0
4,609,258	+		GFF4614	0.22	+0.4
4,609,261	-		GFF4614	0.22	+0.8
4,609,261	-		GFF4614	0.22	-0.2
4,609,296	+		GFF4614	0.28	-1.3
4,609,298	+		GFF4614	0.28	-0.6
4,609,319	+		GFF4614	0.31	-0.3
4,609,319	+		GFF4614	0.31	-0.9
4,609,319	+		GFF4614	0.31	-0.8
4,609,325	+		GFF4614	0.32	+0.4
4,609,327	-		GFF4614	0.33	-1.1
4,609,327	-		GFF4614	0.33	-0.8
4,609,327	-		GFF4614	0.33	-1.5
4,609,327	-		GFF4614	0.33	-0.4
4,609,327	-		GFF4614	0.33	-3.3
4,609,332	-		GFF4614	0.33	-0.6
4,609,344	+		GFF4614	0.35	+0.4
4,609,344	+		GFF4614	0.35	+0.4
4,609,344	+		GFF4614	0.35	-3.2
4,609,344	+		GFF4614	0.35	-0.6
4,609,344	+		GFF4614	0.35	-0.8
4,609,344	+		GFF4614	0.35	+1.4
4,609,344	+		GFF4614	0.35	-1.9
4,609,352	-		GFF4614	0.37	+0.6
4,609,352	-		GFF4614	0.37	-0.6
4,609,352	-		GFF4614	0.37	+0.9
4,609,352	-		GFF4614	0.37	+0.4
4,609,352	-		GFF4614	0.37	-1.1
4,609,352	-		GFF4614	0.37	+0.6
4,609,352	-		GFF4614	0.37	-1.0
4,609,352	-		GFF4614	0.37	+0.1
4,609,352	-		GFF4614	0.37	+0.3
4,609,383	+		GFF4614	0.42	-0.6
4,609,391	-		GFF4614	0.43	-1.7
4,609,391	-		GFF4614	0.43	-1.6
4,609,426	+		GFF4614	0.48	-0.1
4,609,429	-		GFF4614	0.49	-0.7
4,609,429	-		GFF4614	0.49	-0.0
4,609,450	+		GFF4614	0.52	-1.1
4,609,450	+		GFF4614	0.52	-1.3
4,609,453	-		GFF4614	0.53	+0.1
4,609,458	-		GFF4614	0.53	-0.1
4,609,458	-		GFF4614	0.53	-1.2
4,609,458	-		GFF4614	0.53	-1.5
4,609,458	-		GFF4614	0.53	-2.6
4,609,458	-		GFF4614	0.53	+0.1
4,609,458	-		GFF4614	0.53	-1.6
4,609,463	-		GFF4614	0.54	-0.0
4,609,463	-		GFF4614	0.54	+0.5
4,609,467	+		GFF4614	0.55	+0.4
4,609,467	+		GFF4614	0.55	-0.1
4,609,467	+		GFF4614	0.55	-0.3
4,609,475	-		GFF4614	0.56	-1.1
4,609,477	+		GFF4614	0.56	+1.2
4,609,482	+		GFF4614	0.57	-0.4
4,609,490	-		GFF4614	0.58	-0.9
4,609,536	-		GFF4614	0.66	-1.5
4,609,549	+		GFF4614	0.68	-0.9
4,609,557	-		GFF4614	0.69	-0.8
4,609,559	+		GFF4614	0.69	-1.6
4,609,559	+		GFF4614	0.69	-0.6
4,609,559	+		GFF4614	0.69	+0.1
4,609,563	+		GFF4614	0.70	+0.1
4,609,567	-		GFF4614	0.70	+0.2
4,609,586	+		GFF4614	0.73	+0.2
4,609,606	-		GFF4614	0.77	-1.0
4,609,615	-		GFF4614	0.78	-0.3
4,609,616	-		GFF4614	0.78	-0.6
4,609,622	+		GFF4614	0.79	+0.4
4,609,630	-		GFF4614	0.80	+0.3
4,609,630	-		GFF4614	0.80	-1.1
4,609,659	+		GFF4614	0.85	-0.1
4,609,659	+		GFF4614	0.85	+1.2
4,609,660	-		GFF4614	0.85	-0.6
4,609,660	-		GFF4614	0.85	-1.5
4,609,660	-		GFF4614	0.85	-1.0
4,609,662	+		GFF4614	0.85	-0.4
4,609,672	-		GFF4614	0.87	+0.3
4,609,672	-		GFF4614	0.87	-0.2
4,609,677	-		GFF4614	0.88	-0.0
4,609,703	+				-0.8
4,609,703	-				-0.4
4,609,707	-				-0.7
4,609,714	-				-1.7
4,609,719	-				+0.6
4,609,733	+				-0.6
4,609,741	-				+0.6
4,609,758	+				+0.8
4,609,766	-				-0.0
4,609,815	+				-0.7
4,609,815	+				+0.3
4,609,815	-				+1.6
4,609,823	-				-1.4
4,609,823	-				-2.1
4,609,823	-				-1.9
4,609,823	-				-1.9
4,609,841	-				+0.9
4,609,841	-				-0.4
4,609,891	+				+1.1
4,609,918	+				-0.3
4,609,918	+				-1.7
4,609,918	+				-1.4
4,609,926	-				-1.5
4,609,932	-		GFF4615	0.11	-0.1
4,609,932	-		GFF4615	0.11	-0.4
4,609,936	-		GFF4615	0.11	+0.8
4,609,968	+		GFF4615	0.14	+0.7
4,609,968	+		GFF4615	0.14	-0.7
4,609,968	+		GFF4615	0.14	-1.7
4,609,968	+		GFF4615	0.14	-0.3
4,609,968	+		GFF4615	0.14	-2.2
4,609,968	+		GFF4615	0.14	-2.0
4,609,968	+		GFF4615	0.14	-2.8
4,609,968	+		GFF4615	0.14	+1.0
4,609,968	+		GFF4615	0.14	-0.4
4,609,976	-		GFF4615	0.14	-0.7
4,609,976	-		GFF4615	0.14	+0.3
4,609,976	-		GFF4615	0.14	+0.6
4,609,981	+		GFF4615	0.15	-0.3
4,610,000	+		GFF4615	0.16	-1.2
4,610,000	+		GFF4615	0.16	-1.2
4,610,008	-		GFF4615	0.17	-2.2
4,610,017	+		GFF4615	0.18	-0.4
4,610,037	+		GFF4615	0.20	-1.1
4,610,075	+		GFF4615	0.23	-0.4
4,610,112	+		GFF4615	0.26	+0.5
4,610,112	+		GFF4615	0.26	-0.2
4,610,112	+		GFF4615	0.26	-0.4
4,610,112	+		GFF4615	0.26	-0.6
4,610,112	+		GFF4615	0.26	-0.6
4,610,112	+		GFF4615	0.26	-1.3
4,610,112	+		GFF4615	0.26	-0.8
4,610,112	+		GFF4615	0.26	-1.0
4,610,117	+		GFF4615	0.27	-0.5
4,610,120	-		GFF4615	0.27	-1.3
4,610,120	-		GFF4615	0.27	+0.0
4,610,120	-		GFF4615	0.27	-0.2
4,610,120	-		GFF4615	0.27	+0.5
4,610,120	-		GFF4615	0.27	+0.3
4,610,120	-		GFF4615	0.27	-1.3
4,610,122	+		GFF4615	0.27	-2.0
4,610,122	+		GFF4615	0.27	-0.8
4,610,122	+		GFF4615	0.27	-1.4
4,610,122	+		GFF4615	0.27	-1.3
4,610,122	+		GFF4615	0.27	-1.1
4,610,122	+		GFF4615	0.27	+0.5
4,610,130	-		GFF4615	0.28	+0.3
4,610,136	-		GFF4615	0.28	+0.1
4,610,166	+		GFF4615	0.31	-2.1
4,610,193	+		GFF4615	0.33	-0.0
4,610,193	+		GFF4615	0.33	+0.1
4,610,200	-		GFF4615	0.34	-1.6
4,610,203	+		GFF4615	0.34	+0.4
4,610,220	+		GFF4615	0.36	-0.7
4,610,237	+		GFF4615	0.37	-1.9
4,610,252	+		GFF4615	0.38	-0.6
4,610,252	+		GFF4615	0.38	-0.1
4,610,260	-		GFF4615	0.39	-2.4
4,610,260	-		GFF4615	0.39	-0.4
4,610,280	-		GFF4615	0.41	-1.7
4,610,280	-		GFF4615	0.41	-0.0
4,610,291	-		GFF4615	0.42	+0.5
4,610,293	+		GFF4615	0.42	+0.8
4,610,293	+		GFF4615	0.42	-0.7
4,610,293	+		GFF4615	0.42	-0.1
4,610,301	-		GFF4615	0.43	+0.2
4,610,301	-		GFF4615	0.43	+0.2
4,610,301	-		GFF4615	0.43	-1.7
4,610,301	-		GFF4615	0.43	+0.0
4,610,319	+		GFF4615	0.44	+0.4
4,610,321	+		GFF4615	0.44	+0.3
4,610,321	+		GFF4615	0.44	+0.0
4,610,329	-		GFF4615	0.45	-1.5
4,610,329	-		GFF4615	0.45	+0.2
4,610,365	-		GFF4615	0.48	-0.6
4,610,382	-		GFF4615	0.50	-0.4
4,610,387	-		GFF4615	0.50	-1.6
4,610,419	-		GFF4615	0.53	-0.5
4,610,421	-		GFF4615	0.53	-0.6
4,610,426	-		GFF4615	0.53	-1.3
4,610,430	+		GFF4615	0.54	-1.4
4,610,430	+		GFF4615	0.54	-1.2
4,610,435	+		GFF4615	0.54	+0.0
4,610,438	-		GFF4615	0.54	-2.1
4,610,438	-		GFF4615	0.54	-0.1
4,610,442	-		GFF4615	0.55	+1.0
4,610,443	-		GFF4615	0.55	-1.2
4,610,447	+		GFF4615	0.55	-0.1
4,610,447	+		GFF4615	0.55	-0.9
4,610,454	+		GFF4615	0.56	-1.1
4,610,455	-		GFF4615	0.56	+0.7
4,610,455	-		GFF4615	0.56	-2.5
4,610,462	-		GFF4615	0.57	+0.7
4,610,462	-		GFF4615	0.57	-1.6
4,610,497	+		GFF4615	0.60	+0.2
4,610,512	-		GFF4615	0.61	+0.4
4,610,513	+		GFF4615	0.61	+0.1
4,610,513	+		GFF4615	0.61	+0.9
4,610,513	+		GFF4615	0.61	-1.3
4,610,513	+		GFF4615	0.61	-0.7
4,610,513	+		GFF4615	0.61	+0.4
4,610,513	+		GFF4615	0.61	-2.0
4,610,513	+		GFF4615	0.61	+0.2
4,610,513	+		GFF4615	0.61	-0.1
4,610,513	+		GFF4615	0.61	+0.5
4,610,513	+		GFF4615	0.61	-0.8
4,610,513	+		GFF4615	0.61	-1.1
4,610,518	+		GFF4615	0.61	-0.6
4,610,518	+		GFF4615	0.61	-1.8
4,610,518	+		GFF4615	0.61	+0.7
4,610,518	+		GFF4615	0.61	-0.3
4,610,520	+		GFF4615	0.62	-0.5
4,610,521	-		GFF4615	0.62	-1.1
4,610,521	-		GFF4615	0.62	-0.7
4,610,521	-		GFF4615	0.62	-0.5
4,610,521	-		GFF4615	0.62	-1.1
4,610,521	-		GFF4615	0.62	+0.6
4,610,521	-		GFF4615	0.62	+0.1
4,610,521	-		GFF4615	0.62	-0.5
4,610,521	-		GFF4615	0.62	+1.2
4,610,521	-		GFF4615	0.62	+0.4
4,610,521	-		GFF4615	0.62	-1.9
4,610,521	-		GFF4615	0.62	-0.8
4,610,523	+		GFF4615	0.62	-0.5
4,610,525	+		GFF4615	0.62	-1.3
4,610,526	+		GFF4615	0.62	-0.6
4,610,526	-		GFF4615	0.62	-2.4
4,610,526	-		GFF4615	0.62	+0.1
4,610,526	-		GFF4615	0.62	+1.3
4,610,526	-		GFF4615	0.62	-2.1
4,610,526	-		GFF4615	0.62	-1.1
4,610,526	-		GFF4615	0.62	-1.8
4,610,526	-		GFF4615	0.62	-1.9
4,610,531	+		GFF4615	0.62	-0.4
4,610,533	-		GFF4615	0.63	-0.4
4,610,542	+		GFF4615	0.63	-0.6
4,610,573	-		GFF4615	0.66	-0.9
4,610,614	+		GFF4615	0.70	-0.6
4,610,637	+		GFF4615	0.72	-1.6
4,610,655	-		GFF4615	0.73	-1.6
4,610,665	+		GFF4615	0.74	+0.9
4,610,673	+		GFF4615	0.75	-0.4
4,610,673	+		GFF4615	0.75	-2.3
4,610,673	+		GFF4615	0.75	+1.0
4,610,673	+		GFF4615	0.75	+0.1
4,610,677	-		GFF4615	0.75	+0.2
4,610,681	-		GFF4615	0.76	+1.0
4,610,682	+		GFF4615	0.76	-0.6
4,610,701	+		GFF4615	0.77	+1.4
4,610,709	-		GFF4615	0.78	+0.3
4,610,709	-		GFF4615	0.78	-0.3
4,610,709	-		GFF4615	0.78	-0.3
4,610,709	-		GFF4615	0.78	-0.9
4,610,709	-		GFF4615	0.78	+0.5
4,610,718	+		GFF4615	0.79	-0.3
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