Strain Fitness in Sphingobium sp. HT1-2 around GFF4600

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,591,189	-		GFF4599	0.23	-2.6
4,591,189	-		GFF4599	0.23	+0.2
4,591,201	+		GFF4599	0.24	+0.7
4,591,207	-		GFF4599	0.25	-0.9
4,591,209	-		GFF4599	0.25	-0.1
4,591,209	-		GFF4599	0.25	-0.6
4,591,209	-		GFF4599	0.25	-2.2
4,591,209	-		GFF4599	0.25	+0.1
4,591,214	-		GFF4599	0.25	-1.9
4,591,219	+		GFF4599	0.26	+0.0
4,591,224	+		GFF4599	0.26	-1.1
4,591,224	+		GFF4599	0.26	-1.8
4,591,231	+		GFF4599	0.27	-2.4
4,591,231	+		GFF4599	0.27	-1.6
4,591,231	+		GFF4599	0.27	-0.2
4,591,231	+		GFF4599	0.27	-1.1
4,591,231	+		GFF4599	0.27	+0.0
4,591,238	+		GFF4599	0.27	+0.7
4,591,239	-		GFF4599	0.27	-0.8
4,591,275	-		GFF4599	0.30	-1.2
4,591,283	+		GFF4599	0.31	+0.2
4,591,315	+		GFF4599	0.33	-0.6
4,591,323	-		GFF4599	0.34	-2.4
4,591,323	-		GFF4599	0.34	+0.5
4,591,323	-		GFF4599	0.34	-1.0
4,591,323	-		GFF4599	0.34	-0.3
4,591,328	-		GFF4599	0.34	-2.2
4,591,354	-		GFF4599	0.37	-0.1
4,591,359	+		GFF4599	0.37	+0.0
4,591,364	+		GFF4599	0.37	+0.2
4,591,364	+		GFF4599	0.37	-0.4
4,591,372	-		GFF4599	0.38	+1.0
4,591,382	-		GFF4599	0.39	-1.7
4,591,404	+		GFF4599	0.41	-0.5
4,591,409	+		GFF4599	0.41	+0.7
4,591,409	+		GFF4599	0.41	+0.0
4,591,409	+		GFF4599	0.41	-1.1
4,591,417	-		GFF4599	0.42	-0.2
4,591,417	-		GFF4599	0.42	-0.6
4,591,417	-		GFF4599	0.42	-1.1
4,591,418	-		GFF4599	0.42	-1.9
4,591,447	+		GFF4599	0.44	-0.1
4,591,473	-		GFF4599	0.46	-1.3
4,591,490	+		GFF4599	0.48	-0.2
4,591,496	+		GFF4599	0.48	+1.6
4,591,498	-		GFF4599	0.48	-0.6
4,591,498	-		GFF4599	0.48	-0.3
4,591,536	+		GFF4599	0.51	-0.1
4,591,541	-		GFF4599	0.52	-1.4
4,591,576	+		GFF4599	0.54	-0.3
4,591,590	+		GFF4599	0.56	-0.9
4,591,603	-		GFF4599	0.57	+0.2
4,591,603	-		GFF4599	0.57	-1.1
4,591,618	+		GFF4599	0.58	-2.1
4,591,657	-		GFF4599	0.61	+1.3
4,591,662	-		GFF4599	0.61	-0.1
4,591,680	-		GFF4599	0.63	-0.6
4,591,689	+		GFF4599	0.64	+0.4
4,591,689	+		GFF4599	0.64	-1.1
4,591,689	+		GFF4599	0.64	-1.4
4,591,690	+		GFF4599	0.64	-0.5
4,591,690	+		GFF4599	0.64	+0.1
4,591,695	-		GFF4599	0.64	-0.9
4,591,697	-		GFF4599	0.64	-1.1
4,591,704	+		GFF4599	0.65	-1.7
4,591,724	-		GFF4599	0.66	-2.3
4,591,729	+		GFF4599	0.67	-1.0
4,591,737	-		GFF4599	0.67	+0.6
4,591,741	-		GFF4599	0.68	-0.1
4,591,744	+		GFF4599	0.68	-0.8
4,591,746	-		GFF4599	0.68	-1.7
4,591,747	-		GFF4599	0.68	-1.4
4,591,747	-		GFF4599	0.68	-0.8
4,591,747	-		GFF4599	0.68	-0.6
4,591,754	-		GFF4599	0.69	-0.1
4,591,763	+		GFF4599	0.69	+0.8
4,591,770	+		GFF4599	0.70	-0.5
4,591,771	-		GFF4599	0.70	+0.2
4,591,775	+		GFF4599	0.70	+0.6
4,591,783	-		GFF4599	0.71	-0.4
4,591,851	+		GFF4599	0.77	+1.4
4,591,851	+		GFF4599	0.77	-0.8
4,591,860	+		GFF4599	0.77	-1.2
4,591,860	+		GFF4599	0.77	+0.9
4,591,865	-		GFF4599	0.78	-2.1
4,591,868	+		GFF4599	0.78	+1.0
4,591,868	+		GFF4599	0.78	-0.1
4,591,876	-		GFF4599	0.79	-1.2
4,591,909	-		GFF4599	0.81	-0.2
4,591,959	-		GFF4599	0.85	+0.7
4,591,959	-		GFF4599	0.85	+0.5
4,591,961	+		GFF4599	0.85	-0.1
4,591,964	-		GFF4599	0.86	+1.5
4,591,979	+		GFF4599	0.87	-0.4
4,591,987	-		GFF4599	0.88	-0.2
4,591,987	-		GFF4599	0.88	-0.6
4,591,987	-		GFF4599	0.88	-2.9
4,591,997	-		GFF4599	0.88	+0.9
4,592,046	-				+0.3
4,592,063	+				-1.1
4,592,071	-				+0.5
4,592,076	+				-1.1
4,592,081	+				+0.6
4,592,086	+				-1.6
4,592,089	+				+0.0
4,592,089	+				-0.2
4,592,089	-				+0.8
4,592,089	-				-0.4
4,592,095	+				-0.3
4,592,099	+				-0.5
4,592,103	-				+0.3
4,592,103	-				+1.1
4,592,103	-				-0.7
4,592,107	-				-0.4
4,592,114	-				+0.0
4,592,143	-				-1.8
4,592,150	-				+0.0
4,592,179	+				+0.9
4,592,184	+				-0.9
4,592,192	-				-2.0
4,592,196	+				+0.2
4,592,198	+				-1.3
4,592,204	-				-2.0
4,592,214	-				-1.6
4,592,236	-				+0.3
4,592,250	+				+0.2
4,592,308	-		GFF4600	0.11	-1.9
4,592,327	+		GFF4600	0.12	-0.9
4,592,370	+		GFF4600	0.16	-0.7
4,592,377	+		GFF4600	0.17	+0.1
4,592,410	+		GFF4600	0.19	-0.7
4,592,418	-		GFF4600	0.20	-0.7
4,592,418	-		GFF4600	0.20	-2.6
4,592,418	-		GFF4600	0.20	+0.7
4,592,418	-		GFF4600	0.20	-0.3
4,592,434	+		GFF4600	0.22	-0.9
4,592,442	-		GFF4600	0.22	-1.8
4,592,442	-		GFF4600	0.22	+0.4
4,592,454	-		GFF4600	0.23	-0.5
4,592,501	-		GFF4600	0.27	-1.0
4,592,501	-		GFF4600	0.27	-1.7
4,592,521	+		GFF4600	0.29	-0.2
4,592,529	-		GFF4600	0.30	-1.8
4,592,550	+		GFF4600	0.32	-1.5
4,592,554	-		GFF4600	0.32	-0.5
4,592,571	-		GFF4600	0.34	-2.4
4,592,601	-		GFF4600	0.36	-0.4
4,592,601	-		GFF4600	0.36	-0.8
4,592,602	-		GFF4600	0.36	-0.4
4,592,604	+		GFF4600	0.36	-0.4
4,592,604	+		GFF4600	0.36	-2.0
4,592,604	+		GFF4600	0.36	+0.2
4,592,604	+		GFF4600	0.36	-1.0
4,592,604	+		GFF4600	0.36	+0.3
4,592,604	+		GFF4600	0.36	+1.1
4,592,604	+		GFF4600	0.36	-0.9
4,592,604	+		GFF4600	0.36	+0.6
4,592,604	+		GFF4600	0.36	+1.0
4,592,604	+		GFF4600	0.36	+0.3
4,592,604	+		GFF4600	0.36	+0.3
4,592,604	+		GFF4600	0.36	-0.6
4,592,604	+		GFF4600	0.36	+1.0
4,592,604	+		GFF4600	0.36	+1.0
4,592,604	+		GFF4600	0.36	-0.5
4,592,604	+		GFF4600	0.36	+0.0
4,592,604	+		GFF4600	0.36	-1.3
4,592,604	+		GFF4600	0.36	+0.1
4,592,604	+		GFF4600	0.36	-1.4
4,592,604	+		GFF4600	0.36	-0.4
4,592,604	+		GFF4600	0.36	+1.0
4,592,609	+		GFF4600	0.37	-0.8
4,592,612	-		GFF4600	0.37	+0.0
4,592,612	-		GFF4600	0.37	+0.7
4,592,612	-		GFF4600	0.37	-1.2
4,592,612	-		GFF4600	0.37	+0.2
4,592,612	-		GFF4600	0.37	+0.5
4,592,612	-		GFF4600	0.37	+0.9
4,592,612	-		GFF4600	0.37	+0.2
4,592,612	-		GFF4600	0.37	-1.6
4,592,612	-		GFF4600	0.37	-1.4
4,592,612	-		GFF4600	0.37	-2.4
4,592,612	-		GFF4600	0.37	-1.0
4,592,612	-		GFF4600	0.37	-0.8
4,592,612	-		GFF4600	0.37	-1.7
4,592,612	-		GFF4600	0.37	-1.9
4,592,612	-		GFF4600	0.37	+0.3
4,592,612	-		GFF4600	0.37	-0.4
4,592,612	-		GFF4600	0.37	+0.8
4,592,612	-		GFF4600	0.37	-1.1
4,592,612	-		GFF4600	0.37	+0.4
4,592,617	-		GFF4600	0.38	-1.9
4,592,617	-		GFF4600	0.38	-0.5
4,592,624	+		GFF4600	0.38	-1.0
4,592,624	+		GFF4600	0.38	-0.6
4,592,658	-		GFF4600	0.41	-2.8
4,592,676	-		GFF4600	0.43	-1.8
4,592,676	-		GFF4600	0.43	-0.4
4,592,681	+		GFF4600	0.43	-1.6
4,592,681	+		GFF4600	0.43	-0.9
4,592,681	+		GFF4600	0.43	+0.6
4,592,689	-		GFF4600	0.44	-1.0
4,592,689	-		GFF4600	0.44	+0.1
4,592,696	+		GFF4600	0.44	-1.2
4,592,697	-		GFF4600	0.44	+0.2
4,592,758	+		GFF4600	0.50	-0.5
4,592,766	-		GFF4600	0.50	+0.5
4,592,766	-		GFF4600	0.50	-1.6
4,592,773	+		GFF4600	0.51	-0.6
4,592,773	+		GFF4600	0.51	-0.9
4,592,774	-		GFF4600	0.51	-0.0
4,592,774	-		GFF4600	0.51	-0.9
4,592,779	-		GFF4600	0.52	+0.1
4,592,783	+		GFF4600	0.52	-2.0
4,592,783	+		GFF4600	0.52	-0.6
4,592,791	-		GFF4600	0.53	-0.4
4,592,796	+		GFF4600	0.53	-2.8
4,592,800	+		GFF4600	0.53	-0.4
4,592,806	-		GFF4600	0.54	+0.4
4,592,813	-		GFF4600	0.55	-2.2
4,592,835	+		GFF4600	0.56	+0.8
4,592,866	+		GFF4600	0.59	-0.7
4,592,866	+		GFF4600	0.59	-0.6
4,592,874	-		GFF4600	0.60	-2.4
4,592,874	-		GFF4600	0.60	-1.1
4,592,881	+		GFF4600	0.60	-0.4
4,592,906	-		GFF4600	0.63	-1.8
4,592,916	-		GFF4600	0.64	+0.4
4,592,933	+		GFF4600	0.65	+0.4
4,592,942	-		GFF4600	0.66	-1.0
4,592,945	+		GFF4600	0.66	-0.4
4,592,970	+		GFF4600	0.68	-1.2
4,592,982	+		GFF4600	0.69	-1.4
4,592,987	+		GFF4600	0.70	+1.0
4,592,992	+		GFF4600	0.70	-1.5
4,592,992	+		GFF4600	0.70	+0.1
4,592,992	+		GFF4600	0.70	-0.6
4,592,995	-		GFF4600	0.70	-0.7
4,593,000	-		GFF4600	0.71	-1.2
4,593,000	-		GFF4600	0.71	+0.9
4,593,000	-		GFF4600	0.71	-0.0
4,593,000	-		GFF4600	0.71	+0.1
4,593,000	-		GFF4600	0.71	-1.7
4,593,006	-		GFF4600	0.71	-0.5
4,593,012	-		GFF4600	0.72	+0.7
4,593,018	+		GFF4600	0.72	-0.5
4,593,037	-		GFF4600	0.74	-0.4
4,593,039	+		GFF4600	0.74	-0.6
4,593,044	+		GFF4600	0.75	-0.7
4,593,044	+		GFF4600	0.75	-1.1
4,593,044	+		GFF4600	0.75	-1.2
4,593,044	+		GFF4600	0.75	+0.9
4,593,049	+		GFF4600	0.75	-0.9
4,593,076	+		GFF4600	0.77	-1.3
4,593,084	-		GFF4600	0.78	+0.9
4,593,089	-		GFF4600	0.79	-1.3
4,593,093	+		GFF4600	0.79	-1.4
4,593,128	-		GFF4600	0.82	-1.4
4,593,128	-		GFF4600	0.82	-1.1
4,593,128	-		GFF4600	0.82	-1.4
4,593,128	-		GFF4600	0.82	-0.8
4,593,135	+		GFF4600	0.83	+0.0
4,593,140	+		GFF4600	0.83	-0.3
4,593,140	+		GFF4600	0.83	-1.4
4,593,145	+		GFF4600	0.83	+1.1
4,593,145	+		GFF4600	0.83	-0.1
4,593,148	-		GFF4600	0.84	-0.1
4,593,148	-		GFF4600	0.84	-0.5
4,593,159	+		GFF4600	0.85	+0.9
4,593,172	-		GFF4600	0.86	+0.9
4,593,177	+		GFF4600	0.86	-0.8
4,593,188	+		GFF4600	0.87	+0.7
4,593,188	+		GFF4600	0.87	-0.3
4,593,191	-		GFF4600	0.87	+1.2
4,593,218	-		GFF4600	0.90	-1.4
4,593,231	+				-1.2
4,593,234	+				+0.3
4,593,242	-				+0.1
4,593,272	+				+0.8
4,593,272	+				-0.3
4,593,280	-				+0.2
4,593,333	-				-0.6
4,593,337	+				-1.4
4,593,337	+				+1.1
4,593,337	+				+0.6
4,593,337	+				-1.0
4,593,345	-				+0.1
4,593,345	-				-1.4
4,593,388	-				-1.7
4,593,424	+				-0.9
4,593,424	+				-1.0
4,593,424	+				+0.2
4,593,432	-				-0.4
4,593,432	-				+1.3
4,593,432	-				-0.6
4,593,437	-				-0.9
4,593,465	+				+0.2
4,593,471	-				-2.6
4,593,471	-				+0.4
4,593,495	+				-1.9
4,593,495	+				-0.2
4,593,495	+				-0.0
4,593,495	+				-0.3
4,593,495	+				-0.8
4,593,505	+				-0.4
4,593,513	-		GFF4601	0.10	+0.2
4,593,513	-		GFF4601	0.10	+1.0
4,593,539	+		GFF4601	0.12	-0.2
4,593,540	-		GFF4601	0.12	+0.6
4,593,549	+		GFF4601	0.13	-1.0
4,593,549	+		GFF4601	0.13	-0.8
4,593,552	+		GFF4601	0.13	-1.0
4,593,560	-		GFF4601	0.13	-0.7
4,593,585	+		GFF4601	0.15	-0.7
4,593,585	+		GFF4601	0.15	-1.1
4,593,600	+		GFF4601	0.16	+0.2
4,593,600	+		GFF4601	0.16	+0.5
4,593,600	+		GFF4601	0.16	-1.5
4,593,600	+		GFF4601	0.16	-1.1
4,593,600	+		GFF4601	0.16	+0.4
4,593,600	+		GFF4601	0.16	+0.8
4,593,600	+		GFF4601	0.16	+0.0
4,593,600	+		GFF4601	0.16	-0.7
4,593,600	+		GFF4601	0.16	-0.1
4,593,600	+		GFF4601	0.16	-0.5
4,593,600	+		GFF4601	0.16	-0.1
4,593,600	+		GFF4601	0.16	-0.6
4,593,600	+		GFF4601	0.16	+0.5
4,593,608	-		GFF4601	0.16	-0.2
4,593,608	-		GFF4601	0.16	-0.8
4,593,608	-		GFF4601	0.16	-0.2
4,593,608	-		GFF4601	0.16	+0.5
4,593,608	-		GFF4601	0.16	+0.6
4,593,608	-		GFF4601	0.16	+0.8
4,593,608	-		GFF4601	0.16	+0.0
4,593,616	+		GFF4601	0.17	+0.2
4,593,616	+		GFF4601	0.17	-0.7
4,593,616	+		GFF4601	0.17	-1.7
4,593,616	+		GFF4601	0.17	-0.1
4,593,616	+		GFF4601	0.17	+0.3
4,593,618	-		GFF4601	0.17	+0.2
4,593,618	-		GFF4601	0.17	-0.8
4,593,624	-		GFF4601	0.17	+0.9
4,593,624	-		GFF4601	0.17	+0.5
4,593,624	-		GFF4601	0.17	-1.6
4,593,715	+		GFF4601	0.23	+1.3
4,593,734	+		GFF4601	0.24	-1.6
4,593,740	-		GFF4601	0.25	+0.2
4,593,740	-		GFF4601	0.25	+0.5
4,593,740	-		GFF4601	0.25	-1.6
4,593,742	-		GFF4601	0.25	-1.0
4,593,760	-		GFF4601	0.26	-0.1
4,593,789	-		GFF4601	0.28	-1.6
4,593,821	+		GFF4601	0.30	-1.0
4,593,829	-		GFF4601	0.30	-0.0
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