Strain Fitness in Sphingobium sp. HT1-2 around GFF4584

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,576,604	+		GFF4582	0.23	-0.3
4,576,623	+		GFF4582	0.27	-0.7
4,576,641	+		GFF4582	0.31	-1.6
4,576,691	+		GFF4582	0.41	-2.0
4,576,703	+		GFF4582	0.43	-0.1
4,576,703	+		GFF4582	0.43	+0.7
4,576,771	-		GFF4582	0.57	-1.6
4,576,771	-		GFF4582	0.57	-1.8
4,576,772	-		GFF4582	0.57	+0.4
4,576,772	-		GFF4582	0.57	+0.7
4,576,782	+		GFF4582	0.59	+1.1
4,576,782	+		GFF4582	0.59	-0.8
4,576,782	+		GFF4582	0.59	+1.0
4,576,782	+		GFF4582	0.59	+0.0
4,576,790	-		GFF4582	0.61	+0.0
4,576,790	-		GFF4582	0.61	-1.3
4,576,790	-		GFF4582	0.61	+0.3
4,576,810	+		GFF4582	0.65	+0.0
4,576,835	+		GFF4582	0.70	-2.1
4,576,837	+		GFF4582	0.71	+0.2
4,576,837	+		GFF4582	0.71	-1.7
4,576,837	+		GFF4582	0.71	+1.1
4,576,843	-		GFF4582	0.72	+0.1
4,576,845	-		GFF4582	0.72	+0.1
4,576,845	-		GFF4582	0.72	-0.9
4,576,845	-		GFF4582	0.72	-1.9
4,576,845	-		GFF4582	0.72	+0.4
4,576,850	-		GFF4582	0.73	-0.3
4,576,850	-		GFF4582	0.73	+0.9
4,576,850	-		GFF4582	0.73	+0.1
4,576,858	+		GFF4582	0.75	-1.1
4,576,858	+		GFF4582	0.75	-0.7
4,576,876	-		GFF4582	0.78	+0.3
4,576,904	-		GFF4582	0.84	-0.3
4,576,915	+		GFF4582	0.86	-0.9
4,576,921	-		GFF4582	0.87	-1.8
4,576,946	+				+0.7
4,576,952	+				-0.7
4,576,953	+				-0.1
4,576,953	+				-0.8
4,576,972	-				+0.0
4,576,994	+				+0.4
4,576,994	+				-1.1
4,577,002	-				+0.8
4,577,002	-				-1.0
4,577,005	+				-1.4
4,577,007	-				-1.9
4,577,013	+				-0.0
4,577,021	-				-1.4
4,577,021	-				-0.2
4,577,021	-				-2.1
4,577,022	+				-1.3
4,577,022	+				-1.1
4,577,027	+				-0.1
4,577,030	-				+0.0
4,577,032	+				+0.0
4,577,032	+				-0.2
4,577,035	-				+0.5
4,577,035	-				+0.5
4,577,037	+				-1.7
4,577,049	+		GFF4583	0.12	-0.9
4,577,057	+		GFF4583	0.13	+0.4
4,577,057	-		GFF4583	0.13	-2.4
4,577,099	-		GFF4583	0.20	-1.4
4,577,134	+		GFF4583	0.25	-2.2
4,577,141	+		GFF4583	0.27	-0.7
4,577,147	-		GFF4583	0.28	-0.4
4,577,149	-		GFF4583	0.28	-0.9
4,577,156	+		GFF4583	0.29	+0.5
4,577,156	+		GFF4583	0.29	+0.0
4,577,156	+		GFF4583	0.29	-1.7
4,577,156	+		GFF4583	0.29	-1.6
4,577,156	+		GFF4583	0.29	-0.1
4,577,156	+		GFF4583	0.29	-0.6
4,577,156	+		GFF4583	0.29	-0.3
4,577,156	+		GFF4583	0.29	+0.9
4,577,156	+		GFF4583	0.29	+1.1
4,577,156	+		GFF4583	0.29	+0.7
4,577,161	+		GFF4583	0.30	-1.1
4,577,161	+		GFF4583	0.30	-0.4
4,577,161	-		GFF4583	0.30	-1.9
4,577,161	-		GFF4583	0.30	-0.1
4,577,161	-		GFF4583	0.30	+0.5
4,577,164	-		GFF4583	0.30	+0.0
4,577,164	-		GFF4583	0.30	-0.6
4,577,164	-		GFF4583	0.30	+0.0
4,577,164	-		GFF4583	0.30	-1.6
4,577,164	-		GFF4583	0.30	+0.8
4,577,166	+		GFF4583	0.31	+0.2
4,577,168	+		GFF4583	0.31	-2.0
4,577,169	-		GFF4583	0.31	-0.2
4,577,169	-		GFF4583	0.31	+0.8
4,577,174	-		GFF4583	0.32	-2.0
4,577,174	-		GFF4583	0.32	+0.1
4,577,187	-		GFF4583	0.34	+0.8
4,577,197	+		GFF4583	0.36	+0.1
4,577,197	+		GFF4583	0.36	-0.9
4,577,210	-		GFF4583	0.38	+0.5
4,577,220	+		GFF4583	0.39	-0.4
4,577,226	-		GFF4583	0.40	-1.8
4,577,231	-		GFF4583	0.41	-0.3
4,577,233	+		GFF4583	0.41	+1.9
4,577,252	-		GFF4583	0.44	-0.3
4,577,266	+		GFF4583	0.47	+0.6
4,577,266	+		GFF4583	0.47	+1.3
4,577,266	+		GFF4583	0.47	-0.9
4,577,266	+		GFF4583	0.47	+0.1
4,577,266	+		GFF4583	0.47	-0.5
4,577,274	-		GFF4583	0.48	+0.0
4,577,274	-		GFF4583	0.48	+1.1
4,577,274	-		GFF4583	0.48	+0.2
4,577,274	-		GFF4583	0.48	+0.4
4,577,274	-		GFF4583	0.48	-0.2
4,577,274	-		GFF4583	0.48	-2.7
4,577,274	-		GFF4583	0.48	-1.8
4,577,274	-		GFF4583	0.48	-0.8
4,577,274	-		GFF4583	0.48	-0.2
4,577,288	-		GFF4583	0.50	-0.8
4,577,314	+		GFF4583	0.54	+0.2
4,577,320	+		GFF4583	0.55	-0.5
4,577,322	-		GFF4583	0.56	-2.2
4,577,331	-		GFF4583	0.57	+0.0
4,577,339	+		GFF4583	0.58	+0.6
4,577,339	+		GFF4583	0.58	-2.0
4,577,339	+		GFF4583	0.58	+0.7
4,577,339	+		GFF4583	0.58	-0.4
4,577,339	+		GFF4583	0.58	+0.5
4,577,339	+		GFF4583	0.58	+0.3
4,577,339	+		GFF4583	0.58	+1.7
4,577,339	+		GFF4583	0.58	-0.6
4,577,339	+		GFF4583	0.58	+1.1
4,577,339	+		GFF4583	0.58	-0.6
4,577,339	+		GFF4583	0.58	-0.4
4,577,339	+		GFF4583	0.58	+0.7
4,577,339	+		GFF4583	0.58	+0.7
4,577,339	+		GFF4583	0.58	-2.0
4,577,339	+		GFF4583	0.58	-0.6
4,577,347	-		GFF4583	0.60	+0.9
4,577,347	-		GFF4583	0.60	+0.3
4,577,347	-		GFF4583	0.60	+0.5
4,577,347	-		GFF4583	0.60	-0.0
4,577,347	-		GFF4583	0.60	-0.9
4,577,347	-		GFF4583	0.60	+0.7
4,577,352	+		GFF4583	0.60	+0.5
4,577,357	+		GFF4583	0.61	-1.0
4,577,357	+		GFF4583	0.61	-1.4
4,577,357	+		GFF4583	0.61	+0.3
4,577,357	+		GFF4583	0.61	+0.0
4,577,357	+		GFF4583	0.61	-0.6
4,577,357	+		GFF4583	0.61	-1.0
4,577,357	+		GFF4583	0.61	-0.3
4,577,357	+		GFF4583	0.61	-0.3
4,577,357	+		GFF4583	0.61	-0.6
4,577,357	+		GFF4583	0.61	-0.5
4,577,357	+		GFF4583	0.61	-1.6
4,577,365	-		GFF4583	0.62	-0.4
4,577,365	-		GFF4583	0.62	-0.3
4,577,365	-		GFF4583	0.62	-1.8
4,577,365	-		GFF4583	0.62	-1.3
4,577,365	-		GFF4583	0.62	+0.8
4,577,365	-		GFF4583	0.62	-0.8
4,577,365	-		GFF4583	0.62	-0.9
4,577,365	-		GFF4583	0.62	-2.4
4,577,365	-		GFF4583	0.62	+0.7
4,577,365	-		GFF4583	0.62	-1.7
4,577,372	+		GFF4583	0.64	+0.4
4,577,375	-		GFF4583	0.64	-1.3
4,577,389	+		GFF4583	0.66	+0.7
4,577,389	+		GFF4583	0.66	-1.8
4,577,389	+		GFF4583	0.66	+0.1
4,577,395	+		GFF4583	0.67	-0.4
4,577,395	-		GFF4583	0.67	+0.2
4,577,396	+		GFF4583	0.67	-0.6
4,577,397	-		GFF4583	0.68	-2.0
4,577,397	-		GFF4583	0.68	-1.2
4,577,397	-		GFF4583	0.68	-0.6
4,577,397	-		GFF4583	0.68	+0.3
4,577,403	-		GFF4583	0.69	+0.2
4,577,403	-		GFF4583	0.69	+0.9
4,577,404	-		GFF4583	0.69	-1.4
4,577,404	-		GFF4583	0.69	+0.6
4,577,459	-		GFF4583	0.78	-0.6
4,577,459	-		GFF4583	0.78	-0.3
4,577,498	+		GFF4583	0.84	+1.9
4,577,498	+		GFF4583	0.84	-2.3
4,577,506	-		GFF4583	0.85	-0.4
4,577,520	+		GFF4583	0.87	+0.4
4,577,527	+		GFF4583	0.88	-0.1
4,577,535	+		GFF4583	0.90	-1.9
4,577,565	+				-0.7
4,577,566	+				-0.5
4,577,566	+				-1.1
4,577,566	+				-0.3
4,577,573	-				-0.8
4,577,592	+				-0.3
4,577,592	+				+0.1
4,577,600	-				+1.3
4,577,600	-				-1.4
4,577,608	+				-0.1
4,577,641	+		GFF4584	0.14	-0.0
4,577,646	+		GFF4584	0.15	+0.7
4,577,646	+		GFF4584	0.15	+0.3
4,577,656	+		GFF4584	0.18	+0.6
4,577,656	+		GFF4584	0.18	-2.1
4,577,656	+		GFF4584	0.18	-1.0
4,577,656	+		GFF4584	0.18	-0.6
4,577,656	+		GFF4584	0.18	-0.4
4,577,664	-		GFF4584	0.21	+0.6
4,577,664	-		GFF4584	0.21	-0.8
4,577,664	-		GFF4584	0.21	-2.6
4,577,689	+		GFF4584	0.29	+0.1
4,577,696	+		GFF4584	0.32	-0.3
4,577,696	+		GFF4584	0.32	-1.6
4,577,702	-		GFF4584	0.34	-1.6
4,577,703	-		GFF4584	0.34	-1.2
4,577,704	-		GFF4584	0.34	-1.3
4,577,715	+		GFF4584	0.38	-0.2
4,577,734	+		GFF4584	0.44	-0.3
4,577,737	-		GFF4584	0.45	-0.0
4,577,760	+		GFF4584	0.53	-0.6
4,577,771	-		GFF4584	0.56	-0.2
4,577,771	-		GFF4584	0.56	-0.4
4,577,776	-		GFF4584	0.58	-0.3
4,577,782	-		GFF4584	0.60	+0.3
4,577,790	-		GFF4584	0.63	-1.4
4,577,790	-		GFF4584	0.63	-0.7
4,577,793	+		GFF4584	0.64	+0.6
4,577,793	+		GFF4584	0.64	-0.8
4,577,793	+		GFF4584	0.64	-1.6
4,577,793	+		GFF4584	0.64	+0.4
4,577,795	+		GFF4584	0.64	+0.0
4,577,801	-		GFF4584	0.66	-2.5
4,577,801	-		GFF4584	0.66	-0.7
4,577,801	-		GFF4584	0.66	-0.6
4,577,801	-		GFF4584	0.66	-0.3
4,577,806	-		GFF4584	0.68	-0.1
4,577,808	+		GFF4584	0.69	+0.1
4,577,808	+		GFF4584	0.69	+1.5
4,577,808	+		GFF4584	0.69	+0.4
4,577,811	-		GFF4584	0.70	-0.2
4,577,815	+		GFF4584	0.71	-1.4
4,577,816	-		GFF4584	0.71	-2.1
4,577,816	-		GFF4584	0.71	+0.7
4,577,823	-		GFF4584	0.74	-0.9
4,577,823	-		GFF4584	0.74	-0.4
4,577,823	-		GFF4584	0.74	+0.2
4,577,823	-		GFF4584	0.74	+0.4
4,577,823	-		GFF4584	0.74	-0.3
4,577,876	+				+0.1
4,577,884	-				-0.4
4,577,891	+				+0.3
4,577,899	-				-0.8
4,577,901	+				-0.7
4,577,921	+				-1.1
4,577,921	+				-1.9
4,577,923	+				-3.3
4,577,923	+				+0.7
4,577,931	-				+0.4
4,577,931	-				-1.4
4,577,980	-				-0.6
4,577,980	-				-1.3
4,578,033	+				-2.0
4,578,043	+				-0.5
4,578,043	+				+0.4
4,578,043	+				-1.8
4,578,051	-				-2.5
4,578,051	-				-0.8
4,578,051	-				+0.0
4,578,051	-				-0.3
4,578,053	+				-0.6
4,578,053	+				+0.2
4,578,066	-				+0.6
4,578,074	-				+0.2
4,578,076	+				-2.8
4,578,085	+				+0.8
4,578,088	-				+0.4
4,578,088	-				-1.3
4,578,088	-				-0.9
4,578,092	+				-3.0
4,578,103	-				-0.5
4,578,108	+		GFF4585	0.11	-0.3
4,578,115	+		GFF4585	0.13	-0.3
4,578,159	+		GFF4585	0.26	-0.7
4,578,161	-		GFF4585	0.26	+0.4
4,578,166	+		GFF4585	0.28	-0.1
4,578,166	+		GFF4585	0.28	+0.9
4,578,167	-		GFF4585	0.28	-1.4
4,578,169	-		GFF4585	0.29	-1.4
4,578,173	+		GFF4585	0.30	-0.6
4,578,181	-		GFF4585	0.32	+1.0
4,578,210	+		GFF4585	0.41	-0.0
4,578,225	-		GFF4585	0.45	+0.7
4,578,256	+		GFF4585	0.54	+0.2
4,578,266	+		GFF4585	0.57	+0.5
4,578,271	+		GFF4585	0.58	-0.1
4,578,271	+		GFF4585	0.58	-0.3
4,578,276	+		GFF4585	0.59	-1.0
4,578,276	+		GFF4585	0.59	-0.1
4,578,276	+		GFF4585	0.59	+0.7
4,578,276	+		GFF4585	0.59	-0.5
4,578,276	+		GFF4585	0.59	+1.1
4,578,276	+		GFF4585	0.59	-0.2
4,578,276	+		GFF4585	0.59	+0.1
4,578,276	+		GFF4585	0.59	-0.1
4,578,276	+		GFF4585	0.59	-0.6
4,578,276	+		GFF4585	0.59	-1.4
4,578,276	+		GFF4585	0.59	-0.6
4,578,284	-		GFF4585	0.62	+0.0
4,578,284	-		GFF4585	0.62	+0.8
4,578,284	-		GFF4585	0.62	+0.1
4,578,284	-		GFF4585	0.62	-2.3
4,578,284	-		GFF4585	0.62	-0.0
4,578,284	-		GFF4585	0.62	-0.2
4,578,284	-		GFF4585	0.62	-0.8
4,578,284	-		GFF4585	0.62	+0.6
4,578,284	-		GFF4585	0.62	+0.3
4,578,284	-		GFF4585	0.62	-1.0
4,578,284	-		GFF4585	0.62	-0.4
4,578,284	-		GFF4585	0.62	-1.8
4,578,284	-		GFF4585	0.62	-1.1
4,578,284	-		GFF4585	0.62	+0.4
4,578,284	-		GFF4585	0.62	+0.7
4,578,284	-		GFF4585	0.62	+0.5
4,578,284	-		GFF4585	0.62	+0.8
4,578,289	-		GFF4585	0.63	-0.5
4,578,292	+		GFF4585	0.64	+0.3
4,578,292	+		GFF4585	0.64	+0.0
4,578,299	+		GFF4585	0.66	-0.4
4,578,299	+		GFF4585	0.66	+0.8
4,578,304	+		GFF4585	0.68	+0.1
4,578,304	+		GFF4585	0.68	-0.6
4,578,308	-		GFF4585	0.69	-2.6
4,578,312	-		GFF4585	0.70	-1.1
4,578,329	+		GFF4585	0.75	-2.5
4,578,338	+		GFF4585	0.77	+0.4
4,578,357	+		GFF4585	0.83	+1.1
4,578,362	+		GFF4585	0.84	-0.6
4,578,373	-		GFF4585	0.87	-0.4
4,578,401	+				-1.1
4,578,402	-				-1.0
4,578,408	-				-0.7
4,578,409	-				-1.2
4,578,412	-				-1.1
4,578,412	-				-2.2
4,578,413	-				+0.6
4,578,415	+				-1.5
4,578,419	-				-0.4
4,578,445	+				-0.5
4,578,445	+				+0.7
4,578,445	+				-0.4
4,578,445	+				+0.7
4,578,453	-				+0.3
4,578,455	+				-1.4
4,578,455	+				+0.6
4,578,463	-				+0.0
4,578,487	+				-0.6
4,578,504	+				-1.3
4,578,509	-				-0.1
4,578,521	-				-2.1
4,578,531	-				-0.6
4,578,531	-				+0.0
4,578,564	-				-2.1
4,578,566	+				+0.6
4,578,566	+				-1.3
4,578,583	+				-1.5
4,578,606	-				-0.7
4,578,606	-				-0.6
4,578,611	-				+1.0
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