Strain Fitness in Sphingobium sp. HT1-2 around GFF4555

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,545,234	+		GFF4554	0.36	+0.1
4,545,236	+		GFF4554	0.36	-1.7
4,545,255	+		GFF4554	0.38	-1.5
4,545,269	+		GFF4554	0.38	-1.2
4,545,277	-		GFF4554	0.39	+0.1
4,545,291	-		GFF4554	0.40	+0.3
4,545,291	-		GFF4554	0.40	+0.5
4,545,295	+		GFF4554	0.40	+0.1
4,545,295	+		GFF4554	0.40	-0.7
4,545,303	-		GFF4554	0.41	-2.2
4,545,303	-		GFF4554	0.41	+0.7
4,545,303	-		GFF4554	0.41	-0.6
4,545,313	-		GFF4554	0.41	+0.3
4,545,318	-		GFF4554	0.42	-2.4
4,545,320	+		GFF4554	0.42	+0.5
4,545,320	+		GFF4554	0.42	-0.7
4,545,328	-		GFF4554	0.42	-1.4
4,545,328	-		GFF4554	0.42	-1.0
4,545,328	-		GFF4554	0.42	+0.0
4,545,328	-		GFF4554	0.42	-0.8
4,545,328	-		GFF4554	0.42	+0.5
4,545,328	-		GFF4554	0.42	+0.8
4,545,353	-		GFF4554	0.44	+0.2
4,545,386	-		GFF4554	0.46	-1.9
4,545,387	+		GFF4554	0.46	-2.7
4,545,405	+		GFF4554	0.47	-3.3
4,545,413	-		GFF4554	0.48	+0.2
4,545,419	+		GFF4554	0.48	-1.9
4,545,427	+		GFF4554	0.49	-0.4
4,545,427	-		GFF4554	0.49	-0.3
4,545,458	+		GFF4554	0.51	-0.4
4,545,463	+		GFF4554	0.51	-1.4
4,545,463	+		GFF4554	0.51	-1.2
4,545,463	+		GFF4554	0.51	-0.8
4,545,468	+		GFF4554	0.51	-1.3
4,545,469	+		GFF4554	0.52	-0.3
4,545,469	+		GFF4554	0.52	-1.9
4,545,470	+		GFF4554	0.52	-0.1
4,545,470	+		GFF4554	0.52	-1.3
4,545,471	-		GFF4554	0.52	-0.8
4,545,471	-		GFF4554	0.52	-0.7
4,545,475	+		GFF4554	0.52	-0.2
4,545,483	-		GFF4554	0.52	+0.1
4,545,511	-		GFF4554	0.54	-0.3
4,545,511	-		GFF4554	0.54	+0.2
4,545,521	+		GFF4554	0.55	-0.8
4,545,525	+		GFF4554	0.55	-1.0
4,545,529	-		GFF4554	0.55	-0.2
4,545,543	+		GFF4554	0.56	-0.1
4,545,548	+		GFF4554	0.57	+0.1
4,545,551	-		GFF4554	0.57	-0.2
4,545,556	-		GFF4554	0.57	+0.5
4,545,565	+		GFF4554	0.58	+0.4
4,545,587	-		GFF4554	0.59	+0.4
4,545,589	+		GFF4554	0.59	+1.0
4,545,589	+		GFF4554	0.59	-0.2
4,545,589	+		GFF4554	0.59	-0.3
4,545,589	+		GFF4554	0.59	+0.2
4,545,631	+		GFF4554	0.62	+0.2
4,545,631	+		GFF4554	0.62	-0.1
4,545,638	-		GFF4554	0.63	-2.1
4,545,639	-		GFF4554	0.63	-0.1
4,545,639	-		GFF4554	0.63	-0.5
4,545,639	-		GFF4554	0.63	+0.5
4,545,639	-		GFF4554	0.63	-1.5
4,545,639	-		GFF4554	0.63	+0.9
4,545,639	-		GFF4554	0.63	-0.0
4,545,655	+		GFF4554	0.64	-1.2
4,545,660	+		GFF4554	0.64	-1.2
4,545,660	+		GFF4554	0.64	-0.7
4,545,660	+		GFF4554	0.64	+0.0
4,545,660	+		GFF4554	0.64	-0.2
4,545,660	+		GFF4554	0.64	-1.1
4,545,660	+		GFF4554	0.64	-0.8
4,545,660	+		GFF4554	0.64	-0.0
4,545,663	-		GFF4554	0.64	-0.7
4,545,665	+		GFF4554	0.64	-0.5
4,545,668	-		GFF4554	0.65	-1.5
4,545,668	-		GFF4554	0.65	-1.1
4,545,668	-		GFF4554	0.65	-1.9
4,545,668	-		GFF4554	0.65	+1.4
4,545,668	-		GFF4554	0.65	+0.5
4,545,668	-		GFF4554	0.65	-0.5
4,545,668	-		GFF4554	0.65	+0.5
4,545,673	-		GFF4554	0.65	-0.2
4,545,673	-		GFF4554	0.65	-1.2
4,545,673	-		GFF4554	0.65	+0.2
4,545,673	-		GFF4554	0.65	+1.1
4,545,673	-		GFF4554	0.65	-2.0
4,545,673	-		GFF4554	0.65	-1.1
4,545,673	-		GFF4554	0.65	+0.5
4,545,695	+		GFF4554	0.66	+0.2
4,545,703	-		GFF4554	0.67	-0.1
4,545,732	+		GFF4554	0.69	-1.8
4,545,732	+		GFF4554	0.69	+0.2
4,545,733	-		GFF4554	0.69	+1.0
4,545,733	-		GFF4554	0.69	-2.0
4,545,756	-		GFF4554	0.70	-0.5
4,545,762	-		GFF4554	0.71	-0.5
4,545,773	+		GFF4554	0.71	+0.4
4,545,781	-		GFF4554	0.72	-0.4
4,545,790	-		GFF4554	0.72	+0.2
4,545,790	-		GFF4554	0.72	-0.8
4,545,812	+		GFF4554	0.74	-1.4
4,545,846	-		GFF4554	0.76	+0.3
4,545,850	+		GFF4554	0.76	+0.5
4,545,855	+		GFF4554	0.77	-0.9
4,545,855	+		GFF4554	0.77	+0.3
4,545,861	+		GFF4554	0.77	-2.0
4,545,870	-		GFF4554	0.78	-0.4
4,545,886	+		GFF4554	0.79	-0.8
4,545,905	+		GFF4554	0.80	-0.2
4,545,908	-		GFF4554	0.80	-0.8
4,545,929	-		GFF4554	0.82	-2.9
4,545,935	+		GFF4554	0.82	-0.6
4,545,935	+		GFF4554	0.82	-3.0
4,545,936	+		GFF4554	0.82	-0.5
4,545,943	-		GFF4554	0.82	-1.8
4,545,943	-		GFF4554	0.82	-0.4
4,545,973	+		GFF4554	0.84	-0.5
4,545,973	+		GFF4554	0.84	-1.0
4,545,997	+		GFF4554	0.86	+0.5
4,546,000	-		GFF4554	0.86	-2.2
4,546,014	+		GFF4554	0.87	-0.8
4,546,014	+		GFF4554	0.87	-1.8
4,546,019	+		GFF4554	0.87	-0.2
4,546,019	+		GFF4554	0.87	-0.5
4,546,027	-		GFF4554	0.88	-0.6
4,546,027	-		GFF4554	0.88	+1.5
4,546,027	-		GFF4554	0.88	+0.1
4,546,027	-		GFF4554	0.88	-0.5
4,546,027	-		GFF4554	0.88	-0.1
4,546,027	-		GFF4554	0.88	+0.6
4,546,103	-				-0.4
4,546,137	+				-1.3
4,546,140	+				-0.1
4,546,140	+				-0.9
4,546,145	-				+0.3
4,546,147	+				-0.5
4,546,148	-				-2.2
4,546,158	+				-0.2
4,546,166	-				+0.1
4,546,213	+				-1.5
4,546,214	-				-2.2
4,546,216	-				-0.4
4,546,221	+				+1.4
4,546,247	+				-0.0
4,546,247	+				+0.8
4,546,255	-				+0.1
4,546,255	-				+0.6
4,546,271	+				-1.1
4,546,271	+				-0.3
4,546,279	-				+0.0
4,546,281	+				-0.0
4,546,298	-				-0.5
4,546,309	+				-0.5
4,546,343	+				+0.5
4,546,344	-				-0.5
4,546,361	+				+0.0
4,546,367	-		GFF4555	0.10	+0.8
4,546,369	-		GFF4555	0.10	-1.2
4,546,369	-		GFF4555	0.10	-1.3
4,546,397	+		GFF4555	0.12	-1.9
4,546,401	+		GFF4555	0.12	-0.7
4,546,401	-		GFF4555	0.12	+0.7
4,546,409	-		GFF4555	0.13	-2.3
4,546,434	+		GFF4555	0.14	-1.5
4,546,439	+		GFF4555	0.15	-2.5
4,546,442	-		GFF4555	0.15	-1.9
4,546,455	-		GFF4555	0.16	+0.9
4,546,458	+		GFF4555	0.16	+0.9
4,546,458	+		GFF4555	0.16	+0.0
4,546,458	+		GFF4555	0.16	-1.0
4,546,458	+		GFF4555	0.16	-0.1
4,546,466	-		GFF4555	0.16	-1.2
4,546,466	-		GFF4555	0.16	+0.6
4,546,466	-		GFF4555	0.16	-0.9
4,546,466	-		GFF4555	0.16	+0.5
4,546,466	-		GFF4555	0.16	-2.7
4,546,466	-		GFF4555	0.16	+1.1
4,546,467	-		GFF4555	0.17	+0.8
4,546,472	+		GFF4555	0.17	-0.0
4,546,483	-		GFF4555	0.18	-2.5
4,546,507	+		GFF4555	0.19	-2.2
4,546,510	-		GFF4555	0.19	+0.3
4,546,515	-		GFF4555	0.20	+0.2
4,546,532	+		GFF4555	0.21	-1.4
4,546,532	+		GFF4555	0.21	-0.7
4,546,540	-		GFF4555	0.21	-0.7
4,546,540	-		GFF4555	0.21	-0.6
4,546,564	-		GFF4555	0.23	+0.9
4,546,581	-		GFF4555	0.24	-0.9
4,546,581	-		GFF4555	0.24	-2.1
4,546,587	-		GFF4555	0.24	-0.5
4,546,587	-		GFF4555	0.24	-0.8
4,546,598	+		GFF4555	0.25	-0.3
4,546,623	-		GFF4555	0.27	+0.2
4,546,636	+		GFF4555	0.27	-0.1
4,546,636	+		GFF4555	0.27	+0.3
4,546,656	+		GFF4555	0.29	-1.7
4,546,662	-		GFF4555	0.29	-0.4
4,546,664	-		GFF4555	0.29	-0.3
4,546,669	+		GFF4555	0.29	-1.4
4,546,674	+		GFF4555	0.30	-0.2
4,546,688	+		GFF4555	0.31	-2.3
4,546,703	+		GFF4555	0.32	-0.1
4,546,715	+		GFF4555	0.32	-0.8
4,546,723	+		GFF4555	0.33	+1.0
4,546,730	-		GFF4555	0.33	-0.7
4,546,731	-		GFF4555	0.33	-1.7
4,546,754	+		GFF4555	0.35	+1.1
4,546,760	-		GFF4555	0.35	+0.4
4,546,762	+		GFF4555	0.35	-1.8
4,546,767	+		GFF4555	0.36	-0.5
4,546,781	-		GFF4555	0.37	-0.8
4,546,784	-		GFF4555	0.37	-0.8
4,546,789	+		GFF4555	0.37	+0.9
4,546,827	+		GFF4555	0.40	-0.3
4,546,842	+		GFF4555	0.40	+0.7
4,546,850	-		GFF4555	0.41	+0.3
4,546,876	+		GFF4555	0.43	+0.5
4,546,880	-		GFF4555	0.43	+0.2
4,546,881	+		GFF4555	0.43	-0.7
4,546,884	-		GFF4555	0.43	-2.0
4,546,884	-		GFF4555	0.43	+0.6
4,546,884	-		GFF4555	0.43	-0.6
4,546,938	+		GFF4555	0.47	-0.6
4,546,938	+		GFF4555	0.47	-0.9
4,546,938	+		GFF4555	0.47	-1.6
4,546,938	+		GFF4555	0.47	-0.7
4,546,938	+		GFF4555	0.47	+0.9
4,546,938	+		GFF4555	0.47	-0.8
4,546,946	-		GFF4555	0.47	+1.2
4,546,946	-		GFF4555	0.47	-0.5
4,546,946	-		GFF4555	0.47	+1.3
4,546,946	-		GFF4555	0.47	-2.0
4,546,946	-		GFF4555	0.47	-1.0
4,546,957	+		GFF4555	0.48	+0.1
4,546,957	+		GFF4555	0.48	+0.5
4,546,957	+		GFF4555	0.48	-1.8
4,546,963	+		GFF4555	0.48	-1.4
4,546,965	-		GFF4555	0.48	-0.2
4,546,971	-		GFF4555	0.49	+0.2
4,546,981	+		GFF4555	0.49	+0.4
4,546,981	-		GFF4555	0.49	-2.4
4,546,981	-		GFF4555	0.49	-1.5
4,546,998	-		GFF4555	0.50	+0.6
4,546,998	-		GFF4555	0.50	-0.8
4,547,007	-		GFF4555	0.51	-1.0
4,547,031	+		GFF4555	0.53	-1.6
4,547,031	+		GFF4555	0.53	+0.8
4,547,031	+		GFF4555	0.53	-0.3
4,547,031	+		GFF4555	0.53	-0.2
4,547,031	+		GFF4555	0.53	-1.5
4,547,031	+		GFF4555	0.53	+0.7
4,547,036	+		GFF4555	0.53	-0.5
4,547,036	+		GFF4555	0.53	-0.4
4,547,039	-		GFF4555	0.53	-0.7
4,547,039	-		GFF4555	0.53	-0.9
4,547,039	-		GFF4555	0.53	-2.7
4,547,039	-		GFF4555	0.53	+0.0
4,547,039	-		GFF4555	0.53	-0.5
4,547,039	-		GFF4555	0.53	-2.3
4,547,039	-		GFF4555	0.53	-2.8
4,547,044	-		GFF4555	0.53	+0.0
4,547,044	-		GFF4555	0.53	-0.1
4,547,044	-		GFF4555	0.53	-1.8
4,547,044	-		GFF4555	0.53	-1.5
4,547,044	-		GFF4555	0.53	-0.3
4,547,080	+		GFF4555	0.56	-0.1
4,547,083	+		GFF4555	0.56	-1.0
4,547,083	+		GFF4555	0.56	-1.1
4,547,083	-		GFF4555	0.56	-0.1
4,547,084	+		GFF4555	0.56	+0.4
4,547,091	-		GFF4555	0.56	-3.2
4,547,091	-		GFF4555	0.56	+0.2
4,547,091	-		GFF4555	0.56	-1.0
4,547,091	-		GFF4555	0.56	-0.2
4,547,098	+		GFF4555	0.57	-0.2
4,547,098	+		GFF4555	0.57	-0.8
4,547,098	+		GFF4555	0.57	+0.7
4,547,098	+		GFF4555	0.57	-1.0
4,547,098	+		GFF4555	0.57	-2.7
4,547,098	+		GFF4555	0.57	-0.5
4,547,098	+		GFF4555	0.57	-1.1
4,547,098	+		GFF4555	0.57	-0.4
4,547,098	+		GFF4555	0.57	-0.6
4,547,098	+		GFF4555	0.57	-1.1
4,547,098	+		GFF4555	0.57	-0.9
4,547,106	-		GFF4555	0.57	-1.4
4,547,106	-		GFF4555	0.57	-0.0
4,547,106	-		GFF4555	0.57	+0.2
4,547,106	-		GFF4555	0.57	-0.2
4,547,106	-		GFF4555	0.57	-1.2
4,547,106	-		GFF4555	0.57	-1.4
4,547,106	-		GFF4555	0.57	+0.7
4,547,106	-		GFF4555	0.57	-2.0
4,547,106	-		GFF4555	0.57	-0.8
4,547,106	-		GFF4555	0.57	-0.1
4,547,106	-		GFF4555	0.57	-2.3
4,547,113	-		GFF4555	0.58	-0.8
4,547,118	-		GFF4555	0.58	-1.1
4,547,120	+		GFF4555	0.58	+0.5
4,547,132	+		GFF4555	0.59	+0.3
4,547,132	+		GFF4555	0.59	+0.0
4,547,133	-		GFF4555	0.59	-0.6
4,547,140	-		GFF4555	0.60	+0.7
4,547,140	-		GFF4555	0.60	-1.4
4,547,152	+		GFF4555	0.60	+0.0
4,547,157	+		GFF4555	0.61	-1.2
4,547,157	+		GFF4555	0.61	+0.1
4,547,165	-		GFF4555	0.61	+0.4
4,547,189	-		GFF4555	0.63	-1.6
4,547,207	-		GFF4555	0.64	-1.0
4,547,208	-		GFF4555	0.64	-0.0
4,547,208	-		GFF4555	0.64	-1.2
4,547,233	+		GFF4555	0.65	-2.0
4,547,233	+		GFF4555	0.65	-0.2
4,547,233	+		GFF4555	0.65	+1.6
4,547,233	+		GFF4555	0.65	-2.0
4,547,233	+		GFF4555	0.65	+0.0
4,547,235	+		GFF4555	0.66	+0.7
4,547,235	+		GFF4555	0.66	+0.3
4,547,235	+		GFF4555	0.66	+0.1
4,547,235	+		GFF4555	0.66	-1.4
4,547,235	+		GFF4555	0.66	+0.8
4,547,235	+		GFF4555	0.66	+0.4
4,547,241	-		GFF4555	0.66	-2.0
4,547,241	-		GFF4555	0.66	-0.3
4,547,243	-		GFF4555	0.66	-0.6
4,547,243	-		GFF4555	0.66	+0.8
4,547,243	-		GFF4555	0.66	-1.5
4,547,243	-		GFF4555	0.66	+0.5
4,547,243	-		GFF4555	0.66	-1.1
4,547,243	-		GFF4555	0.66	+0.5
4,547,243	-		GFF4555	0.66	-0.4
4,547,254	+		GFF4555	0.67	+0.7
4,547,267	+		GFF4555	0.68	-0.4
4,547,267	+		GFF4555	0.68	-0.9
4,547,275	-		GFF4555	0.68	+0.9
4,547,286	-		GFF4555	0.69	-1.1
4,547,288	+		GFF4555	0.69	-1.2
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4,547,567	+		GFF4555	0.87	-2.1
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4,547,651	-				-1.4
4,547,671	+				-0.3
4,547,671	+				-0.1
4,547,687	+				+0.6
4,547,697	-				-2.5
4,547,700	-				-1.7
4,547,702	-				-2.0
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4,547,722	+				+1.4
4,547,725	-				-1.7
4,547,735	+				+2.3
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4,547,796	+				+0.0
4,547,796	+				-1.4
4,547,807	+				-0.9
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4,547,814	-				-0.0
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4,547,817	+				-1.0
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4,547,833	+				-1.7
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4,547,891	+				-2.4
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4,547,931	+				-0.5
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4,547,940	+				-2.7
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4,547,991	+				+0.4
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