Strain Fitness in Sphingobium sp. HT1-2 around GFF4529

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,517,296	-		GFF4527	0.80	+0.2
4,517,296	-		GFF4527	0.80	-0.6
4,517,296	-		GFF4527	0.80	+0.1
4,517,299	+		GFF4527	0.81	-1.5
4,517,299	+		GFF4527	0.81	-1.4
4,517,299	+		GFF4527	0.81	+0.4
4,517,299	+		GFF4527	0.81	-2.3
4,517,299	+		GFF4527	0.81	-1.0
4,517,299	+		GFF4527	0.81	-0.0
4,517,299	+		GFF4527	0.81	+0.8
4,517,307	-		GFF4527	0.81	-1.4
4,517,307	-		GFF4527	0.81	-0.2
4,517,333	+		GFF4527	0.83	-1.9
4,517,334	-		GFF4527	0.83	-0.4
4,517,334	-		GFF4527	0.83	-0.1
4,517,340	-		GFF4527	0.83	-1.0
4,517,374	-		GFF4527	0.86	-0.3
4,517,378	+		GFF4527	0.86	+1.3
4,517,378	+		GFF4527	0.86	-0.2
4,517,391	+		GFF4527	0.87	-0.7
4,517,395	+		GFF4527	0.87	+0.7
4,517,398	-		GFF4527	0.87	+0.7
4,517,401	+		GFF4527	0.88	-0.4
4,517,428	-		GFF4527	0.90	-0.3
4,517,438	+				+0.2
4,517,452	+				+1.0
4,517,461	+				-0.4
4,517,463	+				-0.2
4,517,475	-				-0.3
4,517,475	-				-0.7
4,517,475	-				-1.8
4,517,506	+				-1.8
4,517,506	+				-1.5
4,517,506	+				+0.6
4,517,508	-				-1.6
4,517,521	+				+0.6
4,517,524	-				+0.6
4,517,572	+				+0.1
4,517,572	+				-0.3
4,517,572	+				-3.3
4,517,580	-				-1.4
4,517,588	+				-1.6
4,517,590	+				-2.6
4,517,596	+				-0.0
4,517,598	-				-1.1
4,517,644	+				-1.6
4,517,659	+				+0.7
4,517,673	+				+0.4
4,517,686	+				-1.6
4,517,692	-				+0.2
4,517,695	+				+1.1
4,517,695	-				-1.8
4,517,717	-		GFF4528	0.14	+0.6
4,517,728	-		GFF4528	0.16	-0.0
4,517,732	+		GFF4528	0.17	+0.5
4,517,774	-		GFF4528	0.26	-0.9
4,517,805	-		GFF4528	0.32	+0.3
4,517,805	-		GFF4528	0.32	-0.3
4,517,817	-		GFF4528	0.35	-0.3
4,517,852	-		GFF4528	0.42	+0.8
4,517,870	+		GFF4528	0.45	+1.3
4,517,969	+		GFF4528	0.66	+0.5
4,517,969	+		GFF4528	0.66	+0.1
4,517,974	+		GFF4528	0.67	+0.1
4,517,974	+		GFF4528	0.67	-0.2
4,517,981	+		GFF4528	0.68	-0.0
4,517,981	+		GFF4528	0.68	+0.2
4,517,982	-		GFF4528	0.68	+0.2
4,517,989	-		GFF4528	0.70	+0.1
4,517,991	+		GFF4528	0.70	+0.4
4,517,999	-		GFF4528	0.72	-0.8
4,518,002	+		GFF4528	0.72	-0.6
4,518,010	-		GFF4528	0.74	-1.1
4,518,010	-		GFF4528	0.74	+0.2
4,518,010	-		GFF4528	0.74	+0.5
4,518,010	-		GFF4528	0.74	-2.2
4,518,023	+		GFF4528	0.77	+0.7
4,518,023	+		GFF4528	0.77	-0.2
4,518,023	+		GFF4528	0.77	-1.2
4,518,031	-		GFF4528	0.78	-0.3
4,518,031	-		GFF4528	0.78	-0.6
4,518,031	-		GFF4528	0.78	-0.8
4,518,036	-		GFF4528	0.79	-2.4
4,518,036	-		GFF4528	0.79	+0.7
4,518,069	+		GFF4528	0.86	+0.2
4,518,071	-		GFF4528	0.87	-1.1
4,518,071	-		GFF4528	0.87	+0.1
4,518,088	+				+1.1
4,518,088	+				+0.7
4,518,088	+				+2.1
4,518,143	-				+0.2
4,518,145	-				-2.4
4,518,177	+				+0.3
4,518,185	-				-1.6
4,518,185	-				-1.3
4,518,185	-				-1.2
4,518,194	+				-0.5
4,518,204	-				-0.6
4,518,221	+				-0.9
4,518,223	+				+0.1
4,518,231	-				-1.0
4,518,256	-				+0.1
4,518,282	+				-0.2
4,518,282	+				+0.8
4,518,282	+				-0.3
4,518,317	-				-1.2
4,518,328	+				+0.0
4,518,341	-				-0.4
4,518,376	+				-0.6
4,518,382	-				+0.4
4,518,385	+				-0.9
4,518,385	+				-1.8
4,518,385	+				-0.3
4,518,406	+				+1.6
4,518,441	+				+0.4
4,518,441	-				-1.5
4,518,446	+				+0.2
4,518,449	-				-2.1
4,518,449	-				+0.6
4,518,449	-				+0.7
4,518,451	+				-2.6
4,518,451	+				+2.1
4,518,454	-				+0.8
4,518,459	-				-0.9
4,518,464	-				+0.1
4,518,469	-				-1.2
4,518,483	+				-0.0
4,518,498	-		GFF4529	0.11	-0.8
4,518,513	+		GFF4529	0.11	+0.3
4,518,513	+		GFF4529	0.11	-0.5
4,518,525	+		GFF4529	0.12	-0.6
4,518,525	+		GFF4529	0.12	-0.1
4,518,535	-		GFF4529	0.12	+0.4
4,518,556	+		GFF4529	0.13	-2.2
4,518,608	-		GFF4529	0.16	-0.6
4,518,610	-		GFF4529	0.16	+0.8
4,518,624	+		GFF4529	0.17	-0.7
4,518,626	+		GFF4529	0.17	-1.3
4,518,629	-		GFF4529	0.17	-0.5
4,518,631	+		GFF4529	0.17	-1.6
4,518,631	+		GFF4529	0.17	+1.0
4,518,631	+		GFF4529	0.17	+0.7
4,518,631	+		GFF4529	0.17	-0.1
4,518,631	+		GFF4529	0.17	-0.7
4,518,637	-		GFF4529	0.17	-0.9
4,518,639	-		GFF4529	0.18	-1.7
4,518,639	-		GFF4529	0.18	-0.3
4,518,639	-		GFF4529	0.18	+0.6
4,518,639	-		GFF4529	0.18	-0.4
4,518,639	-		GFF4529	0.18	+0.1
4,518,639	-		GFF4529	0.18	-0.5
4,518,639	-		GFF4529	0.18	+0.2
4,518,644	-		GFF4529	0.18	-1.6
4,518,655	+		GFF4529	0.18	-0.3
4,518,660	+		GFF4529	0.19	-2.0
4,518,665	+		GFF4529	0.19	-0.4
4,518,665	+		GFF4529	0.19	-1.1
4,518,665	+		GFF4529	0.19	-0.3
4,518,665	+		GFF4529	0.19	-0.8
4,518,673	-		GFF4529	0.19	-1.4
4,518,673	-		GFF4529	0.19	-0.3
4,518,673	-		GFF4529	0.19	+0.4
4,518,673	-		GFF4529	0.19	+1.1
4,518,673	-		GFF4529	0.19	+0.6
4,518,700	-		GFF4529	0.20	+1.2
4,518,712	+		GFF4529	0.21	+1.4
4,518,712	+		GFF4529	0.21	-1.6
4,518,712	+		GFF4529	0.21	-1.5
4,518,720	-		GFF4529	0.21	+0.2
4,518,720	-		GFF4529	0.21	+1.2
4,518,733	+		GFF4529	0.22	+0.4
4,518,734	-		GFF4529	0.22	-0.8
4,518,768	-		GFF4529	0.24	-2.6
4,518,781	+		GFF4529	0.24	-1.7
4,518,814	+		GFF4529	0.26	-2.1
4,518,819	+		GFF4529	0.26	-2.6
4,518,838	+		GFF4529	0.27	-0.6
4,518,838	+		GFF4529	0.27	+0.3
4,518,848	-		GFF4529	0.28	-1.0
4,518,928	+		GFF4529	0.32	+0.7
4,518,933	+		GFF4529	0.32	+0.8
4,518,933	+		GFF4529	0.32	+0.5
4,518,941	-		GFF4529	0.32	+0.7
4,518,943	+		GFF4529	0.32	-1.5
4,518,943	+		GFF4529	0.32	-1.8
4,518,943	+		GFF4529	0.32	-2.4
4,518,951	-		GFF4529	0.33	+0.5
4,518,951	-		GFF4529	0.33	-1.1
4,518,973	+		GFF4529	0.34	-1.6
4,518,973	+		GFF4529	0.34	-1.2
4,518,979	+		GFF4529	0.34	-1.1
4,518,984	+		GFF4529	0.34	-0.8
4,518,986	+		GFF4529	0.34	-0.4
4,519,000	+		GFF4529	0.35	+0.8
4,519,000	+		GFF4529	0.35	+1.1
4,519,002	+		GFF4529	0.35	-2.1
4,519,002	+		GFF4529	0.35	+0.7
4,519,003	-		GFF4529	0.35	-0.3
4,519,008	-		GFF4529	0.35	+0.6
4,519,008	-		GFF4529	0.35	+0.1
4,519,008	-		GFF4529	0.35	-1.4
4,519,008	-		GFF4529	0.35	-0.5
4,519,010	-		GFF4529	0.36	+0.6
4,519,012	+		GFF4529	0.36	+0.8
4,519,012	+		GFF4529	0.36	-2.3
4,519,012	+		GFF4529	0.36	-1.8
4,519,012	+		GFF4529	0.36	+1.4
4,519,017	+		GFF4529	0.36	+1.0
4,519,020	-		GFF4529	0.36	-0.0
4,519,025	-		GFF4529	0.36	-0.6
4,519,030	-		GFF4529	0.36	-0.6
4,519,078	-		GFF4529	0.39	-1.3
4,519,080	+		GFF4529	0.39	-2.2
4,519,081	+		GFF4529	0.39	-0.3
4,519,085	+		GFF4529	0.39	+0.1
4,519,115	-		GFF4529	0.41	-0.3
4,519,130	-		GFF4529	0.41	-0.1
4,519,135	+		GFF4529	0.42	+0.1
4,519,136	+		GFF4529	0.42	+0.1
4,519,144	-		GFF4529	0.42	-1.6
4,519,162	-		GFF4529	0.43	-0.0
4,519,193	-		GFF4529	0.44	-1.1
4,519,205	+		GFF4529	0.45	-0.3
4,519,206	+		GFF4529	0.45	-1.2
4,519,214	-		GFF4529	0.45	-1.4
4,519,214	-		GFF4529	0.45	+0.7
4,519,216	+		GFF4529	0.46	-0.9
4,519,232	+		GFF4529	0.46	+0.8
4,519,232	+		GFF4529	0.46	-0.2
4,519,232	+		GFF4529	0.46	+0.2
4,519,240	-		GFF4529	0.47	+0.1
4,519,249	+		GFF4529	0.47	-0.7
4,519,256	+		GFF4529	0.47	-0.2
4,519,260	+		GFF4529	0.48	+0.4
4,519,284	+		GFF4529	0.49	-0.9
4,519,287	+		GFF4529	0.49	-0.4
4,519,287	+		GFF4529	0.49	+0.1
4,519,295	-		GFF4529	0.49	+1.2
4,519,295	-		GFF4529	0.49	-0.3
4,519,297	+		GFF4529	0.49	-0.7
4,519,300	-		GFF4529	0.50	+0.1
4,519,307	+		GFF4529	0.50	-2.1
4,519,315	-		GFF4529	0.50	+0.3
4,519,343	-		GFF4529	0.52	+0.2
4,519,359	-		GFF4529	0.52	-0.3
4,519,366	+		GFF4529	0.53	+0.7
4,519,407	-		GFF4529	0.55	+0.1
4,519,442	+		GFF4529	0.56	-0.5
4,519,442	+		GFF4529	0.56	+0.8
4,519,442	+		GFF4529	0.56	+0.8
4,519,450	-		GFF4529	0.57	+0.7
4,519,450	-		GFF4529	0.57	+0.5
4,519,450	-		GFF4529	0.57	-1.0
4,519,460	-		GFF4529	0.57	-0.1
4,519,460	-		GFF4529	0.57	-0.7
4,519,494	-		GFF4529	0.59	+1.3
4,519,531	+		GFF4529	0.61	-2.1
4,519,532	-		GFF4529	0.61	-1.2
4,519,564	-		GFF4529	0.62	+1.3
4,519,568	+		GFF4529	0.63	-0.1
4,519,570	-		GFF4529	0.63	-0.6
4,519,594	+		GFF4529	0.64	+0.4
4,519,615	+		GFF4529	0.65	-2.5
4,519,663	-		GFF4529	0.67	+0.1
4,519,667	+		GFF4529	0.67	+0.2
4,519,667	+		GFF4529	0.67	-0.5
4,519,667	+		GFF4529	0.67	+0.2
4,519,672	+		GFF4529	0.68	-1.8
4,519,672	+		GFF4529	0.68	-0.4
4,519,672	+		GFF4529	0.68	+0.2
4,519,675	-		GFF4529	0.68	-0.9
4,519,675	-		GFF4529	0.68	-1.3
4,519,675	-		GFF4529	0.68	-2.3
4,519,675	-		GFF4529	0.68	-0.2
4,519,688	+		GFF4529	0.68	-0.1
4,519,701	-		GFF4529	0.69	-2.6
4,519,707	+		GFF4529	0.69	-0.9
4,519,708	+		GFF4529	0.69	-2.6
4,519,709	+		GFF4529	0.69	-0.0
4,519,714	-		GFF4529	0.70	+1.4
4,519,715	-		GFF4529	0.70	+0.4
4,519,724	+		GFF4529	0.70	-0.4
4,519,724	+		GFF4529	0.70	-1.4
4,519,724	+		GFF4529	0.70	-2.1
4,519,724	+		GFF4529	0.70	+1.2
4,519,724	+		GFF4529	0.70	-0.0
4,519,724	+		GFF4529	0.70	+0.4
4,519,732	-		GFF4529	0.71	-2.2
4,519,732	-		GFF4529	0.71	-0.8
4,519,732	-		GFF4529	0.71	-2.1
4,519,732	-		GFF4529	0.71	-2.1
4,519,734	+		GFF4529	0.71	-1.1
4,519,742	+		GFF4529	0.71	-2.5
4,519,754	-		GFF4529	0.72	+0.9
4,519,770	+		GFF4529	0.72	+0.5
4,519,770	+		GFF4529	0.72	-1.9
4,519,775	+		GFF4529	0.73	-2.6
4,519,775	+		GFF4529	0.73	+0.8
4,519,778	-		GFF4529	0.73	-0.7
4,519,778	-		GFF4529	0.73	-1.8
4,519,778	-		GFF4529	0.73	+0.1
4,519,780	+		GFF4529	0.73	+1.1
4,519,780	+		GFF4529	0.73	+0.1
4,519,783	-		GFF4529	0.73	-0.7
4,519,783	-		GFF4529	0.73	-1.8
4,519,783	-		GFF4529	0.73	-0.0
4,519,788	-		GFF4529	0.73	+0.0
4,519,788	-		GFF4529	0.73	-0.6
4,519,788	-		GFF4529	0.73	-1.4
4,519,788	-		GFF4529	0.73	-0.7
4,519,788	-		GFF4529	0.73	-0.4
4,519,804	+		GFF4529	0.74	-0.3
4,519,804	+		GFF4529	0.74	+0.1
4,519,804	+		GFF4529	0.74	+1.4
4,519,812	-		GFF4529	0.74	-1.6
4,519,812	-		GFF4529	0.74	-0.1
4,519,820	+		GFF4529	0.75	+0.2
4,519,828	-		GFF4529	0.75	-0.4
4,519,837	-		GFF4529	0.76	+0.2
4,519,838	-		GFF4529	0.76	-0.5
4,519,844	-		GFF4529	0.76	+0.2
4,519,848	-		GFF4529	0.76	+0.4
4,519,867	+		GFF4529	0.77	+0.0
4,519,883	+		GFF4529	0.78	+0.2
4,519,917	+		GFF4529	0.80	+0.9
4,519,932	+		GFF4529	0.80	-2.6
4,519,932	+		GFF4529	0.80	-0.8
4,519,935	-		GFF4529	0.80	-2.0
4,519,957	+		GFF4529	0.81	-1.5
4,519,970	+		GFF4529	0.82	+0.0
4,519,975	+		GFF4529	0.82	-1.5
4,519,975	+		GFF4529	0.82	+0.3
4,519,983	-		GFF4529	0.83	+1.3
4,520,021	+		GFF4529	0.85	-0.5
4,520,021	-		GFF4529	0.85	-0.6
4,520,023	+		GFF4529	0.85	+0.4
4,520,023	+		GFF4529	0.85	-0.3
4,520,031	-		GFF4529	0.85	-0.6
4,520,045	-		GFF4529	0.86	-1.3
4,520,058	+		GFF4529	0.86	+0.5
4,520,063	-		GFF4529	0.87	-1.0
4,520,066	-		GFF4529	0.87	-0.3
4,520,067	+		GFF4529	0.87	+0.5
4,520,075	-		GFF4529	0.87	+1.2
4,520,075	-		GFF4529	0.87	-1.5
4,520,103	+		GFF4529	0.89	-0.8
4,520,113	+		GFF4529	0.89	+0.0
4,520,113	+		GFF4529	0.89	+0.4
4,520,113	+		GFF4529	0.89	-1.3
4,520,119	-		GFF4529	0.89	+0.6
4,520,121	-		GFF4529	0.89	-0.1
4,520,131	+		GFF4529	0.90	-1.1
4,520,139	-				-1.0
4,520,150	-				-1.8
4,520,162	+				-0.6
4,520,169	+				+0.9
4,520,169	+				+0.1
4,520,170	-				+0.1
4,520,170	-				+0.3
4,520,252	+				-0.2
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