Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4468 and GFF4469 are separated by 23 nucleotides GFF4469 and GFF4470 are separated by 60 nucleotides GFF4470 and GFF4471 overlap by 4 nucleotides GFF4471 and GFF4472 are separated by 138 nucleotides
GFF4468 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 4,461,415 to 4,463,325
GFF4468
GFF4469 - hypothetical protein, at 4,463,349 to 4,463,669
GFF4469
GFF4470 - hypothetical protein, at 4,463,730 to 4,463,951
GFF4470
GFF4471 - Transcriptional regulator, MerR family, at 4,463,948 to 4,464,427
GFF4471
GFF4472 - hypothetical protein, at 4,464,566 to 4,464,925
GFF4472
Position (kb) 4463
4464
4465 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4462.972 kb on - strand, within GFF4468 at 4462.972 kb on - strand, within GFF4468 at 4462.975 kb on + strand, within GFF4468 at 4462.983 kb on - strand, within GFF4468 at 4462.985 kb on + strand, within GFF4468 at 4462.985 kb on + strand, within GFF4468 at 4462.985 kb on + strand, within GFF4468 at 4462.985 kb on + strand, within GFF4468 at 4462.993 kb on - strand, within GFF4468 at 4462.997 kb on + strand, within GFF4468 at 4463.001 kb on - strand, within GFF4468 at 4463.001 kb on - strand, within GFF4468 at 4463.002 kb on + strand, within GFF4468 at 4463.030 kb on - strand, within GFF4468 at 4463.058 kb on - strand, within GFF4468 at 4463.106 kb on + strand, within GFF4468 at 4463.159 kb on + strand at 4463.174 kb on - strand at 4463.183 kb on - strand at 4463.188 kb on - strand at 4463.193 kb on - strand at 4463.203 kb on + strand at 4463.223 kb on - strand at 4463.236 kb on - strand at 4463.242 kb on - strand at 4463.258 kb on + strand at 4463.268 kb on + strand at 4463.276 kb on - strand at 4463.276 kb on - strand at 4463.276 kb on - strand at 4463.287 kb on + strand at 4463.295 kb on - strand at 4463.295 kb on - strand at 4463.301 kb on + strand at 4463.301 kb on + strand at 4463.306 kb on + strand at 4463.350 kb on + strand at 4463.379 kb on - strand at 4463.392 kb on - strand, within GFF4469 at 4463.470 kb on + strand, within GFF4469 at 4463.473 kb on - strand, within GFF4469 at 4463.478 kb on - strand, within GFF4469 at 4463.494 kb on + strand, within GFF4469 at 4463.496 kb on + strand, within GFF4469 at 4463.496 kb on + strand, within GFF4469 at 4463.542 kb on - strand, within GFF4469 at 4463.556 kb on - strand, within GFF4469 at 4463.573 kb on - strand, within GFF4469 at 4463.574 kb on + strand, within GFF4469 at 4463.579 kb on + strand, within GFF4469 at 4463.661 kb on + strand at 4463.725 kb on - strand at 4463.735 kb on - strand at 4463.742 kb on + strand at 4463.750 kb on - strand at 4463.764 kb on - strand, within GFF4470 at 4463.797 kb on - strand, within GFF4470 at 4463.805 kb on - strand, within GFF4470 at 4463.841 kb on - strand, within GFF4470 at 4463.860 kb on + strand, within GFF4470 at 4463.868 kb on - strand, within GFF4470 at 4463.868 kb on - strand, within GFF4470 at 4463.868 kb on - strand, within GFF4470 at 4463.868 kb on - strand, within GFF4470 at 4463.868 kb on - strand, within GFF4470 at 4463.868 kb on - strand, within GFF4470 at 4463.868 kb on - strand, within GFF4470 at 4463.877 kb on + strand, within GFF4470 at 4463.878 kb on - strand, within GFF4470 at 4463.882 kb on + strand, within GFF4470 at 4463.896 kb on - strand, within GFF4470 at 4463.898 kb on - strand, within GFF4470 at 4463.902 kb on + strand, within GFF4470 at 4463.917 kb on + strand, within GFF4470 at 4463.925 kb on - strand, within GFF4470 at 4463.968 kb on + strand at 4463.983 kb on - strand at 4463.984 kb on + strand at 4463.992 kb on - strand at 4464.001 kb on - strand, within GFF4471 at 4464.014 kb on + strand, within GFF4471 at 4464.044 kb on + strand, within GFF4471 at 4464.073 kb on - strand, within GFF4471 at 4464.090 kb on - strand, within GFF4471 at 4464.156 kb on + strand, within GFF4471 at 4464.164 kb on - strand, within GFF4471 at 4464.166 kb on + strand, within GFF4471 at 4464.173 kb on + strand, within GFF4471 at 4464.183 kb on + strand, within GFF4471 at 4464.183 kb on + strand, within GFF4471 at 4464.183 kb on + strand, within GFF4471 at 4464.183 kb on + strand, within GFF4471 at 4464.185 kb on - strand, within GFF4471 at 4464.191 kb on - strand, within GFF4471 at 4464.191 kb on - strand, within GFF4471 at 4464.243 kb on - strand, within GFF4471 at 4464.246 kb on + strand, within GFF4471 at 4464.262 kb on - strand, within GFF4471 at 4464.262 kb on - strand, within GFF4471 at 4464.281 kb on - strand, within GFF4471 at 4464.281 kb on - strand, within GFF4471 at 4464.316 kb on + strand, within GFF4471 at 4464.324 kb on - strand, within GFF4471 at 4464.333 kb on + strand, within GFF4471 at 4464.348 kb on + strand, within GFF4471 at 4464.349 kb on - strand, within GFF4471 at 4464.363 kb on - strand, within GFF4471 at 4464.380 kb on + strand at 4464.388 kb on - strand at 4464.388 kb on - strand at 4464.388 kb on - strand at 4464.452 kb on + strand at 4464.464 kb on + strand at 4464.465 kb on - strand at 4464.465 kb on - strand at 4464.524 kb on - strand at 4464.524 kb on - strand at 4464.530 kb on + strand at 4464.538 kb on - strand at 4464.603 kb on + strand, within GFF4472 at 4464.603 kb on + strand, within GFF4472 at 4464.666 kb on + strand, within GFF4472 at 4464.675 kb on + strand, within GFF4472 at 4464.676 kb on - strand, within GFF4472 at 4464.702 kb on + strand, within GFF4472 at 4464.702 kb on + strand, within GFF4472 at 4464.702 kb on + strand, within GFF4472 at 4464.702 kb on + strand, within GFF4472 at 4464.710 kb on - strand, within GFF4472 at 4464.710 kb on - strand, within GFF4472 at 4464.710 kb on - strand, within GFF4472 at 4464.717 kb on + strand, within GFF4472 at 4464.737 kb on + strand, within GFF4472 at 4464.738 kb on + strand, within GFF4472 at 4464.773 kb on - strand, within GFF4472 at 4464.773 kb on - strand, within GFF4472 at 4464.787 kb on + strand, within GFF4472 at 4464.795 kb on - strand, within GFF4472 at 4464.809 kb on + strand, within GFF4472 at 4464.831 kb on + strand, within GFF4472 at 4464.831 kb on + strand, within GFF4472 at 4464.831 kb on + strand, within GFF4472 at 4464.831 kb on + strand, within GFF4472 at 4464.839 kb on - strand, within GFF4472 at 4464.839 kb on - strand, within GFF4472 at 4464.839 kb on - strand, within GFF4472 at 4464.839 kb on - strand, within GFF4472 at 4464.841 kb on + strand, within GFF4472 at 4464.841 kb on + strand, within GFF4472 at 4464.849 kb on - strand, within GFF4472 at 4464.857 kb on + strand, within GFF4472 at 4464.903 kb on + strand at 4464.931 kb on + strand at 4464.943 kb on + strand at 4464.945 kb on + strand at 4464.945 kb on + strand at 4464.951 kb on - strand at 4464.999 kb on + strand at 4464.999 kb on + strand at 4464.999 kb on + strand at 4464.999 kb on + strand at 4465.007 kb on - strand at 4465.008 kb on - strand at 4465.013 kb on + strand at 4465.071 kb on + strand at 4465.083 kb on + strand at 4465.096 kb on + strand at 4465.130 kb on + strand at 4465.130 kb on + strand at 4465.138 kb on - strand at 4465.149 kb on + strand at 4465.157 kb on - strand at 4465.157 kb on - strand at 4465.164 kb on + strand at 4465.177 kb on - strand at 4465.183 kb on + strand at 4465.216 kb on - strand at 4465.237 kb on + strand at 4465.260 kb on - strand at 4465.270 kb on + strand at 4465.307 kb on + strand at 4465.310 kb on - strand at 4465.310 kb on - strand at 4465.326 kb on + strand at 4465.337 kb on + strand at 4465.339 kb on + strand at 4465.345 kb on - strand at 4465.345 kb on - strand at 4465.352 kb on - strand at 4465.361 kb on + strand at 4465.367 kb on + strand at 4465.369 kb on - strand at 4465.371 kb on + strand at 4465.372 kb on + strand at 4465.372 kb on + strand at 4465.372 kb on + strand at 4465.372 kb on + strand at 4465.375 kb on - strand at 4465.379 kb on + strand at 4465.380 kb on - strand at 4465.392 kb on + strand at 4465.392 kb on + strand at 4465.392 kb on + strand at 4465.392 kb on + strand at 4465.392 kb on + strand at 4465.392 kb on + strand at 4465.392 kb on + strand at 4465.392 kb on + strand at 4465.392 kb on + strand at 4465.392 kb on + strand at 4465.392 kb on + strand at 4465.392 kb on + strand at 4465.392 kb on + strand at 4465.392 kb on + strand at 4465.392 kb on + strand at 4465.392 kb on + strand at 4465.392 kb on + strand at 4465.392 kb on + strand at 4465.400 kb on - strand at 4465.400 kb on - strand at 4465.400 kb on - strand at 4465.400 kb on - strand at 4465.400 kb on - strand at 4465.400 kb on - strand at 4465.400 kb on - strand at 4465.400 kb on - strand at 4465.400 kb on - strand at 4465.400 kb on - strand at 4465.400 kb on - strand at 4465.400 kb on - strand at 4465.400 kb on - strand at 4465.400 kb on - strand at 4465.400 kb on - strand at 4465.400 kb on - strand at 4465.400 kb on - strand at 4465.400 kb on - strand at 4465.400 kb on - strand at 4465.400 kb on - strand at 4465.400 kb on - strand at 4465.412 kb on - strand at 4465.420 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 4,462,972 - GFF4468 0.81 +0.5 4,462,972 - GFF4468 0.81 +0.1 4,462,975 + GFF4468 0.82 +0.6 4,462,983 - GFF4468 0.82 -1.7 4,462,985 + GFF4468 0.82 +0.2 4,462,985 + GFF4468 0.82 +0.0 4,462,985 + GFF4468 0.82 -1.2 4,462,985 + GFF4468 0.82 +0.8 4,462,993 - GFF4468 0.83 -2.6 4,462,997 + GFF4468 0.83 -2.8 4,463,001 - GFF4468 0.83 -1.0 4,463,001 - GFF4468 0.83 +1.3 4,463,002 + GFF4468 0.83 -0.7 4,463,030 - GFF4468 0.85 +0.2 4,463,058 - GFF4468 0.86 +0.6 4,463,106 + GFF4468 0.88 -2.0 4,463,159 + -0.3 4,463,174 - +0.3 4,463,183 - -0.5 4,463,188 - +0.2 4,463,193 - +0.7 4,463,203 + -0.2 4,463,223 - -0.8 4,463,236 - -0.3 4,463,242 - +0.8 4,463,258 + +0.6 4,463,268 + -0.1 4,463,276 - +0.6 4,463,276 - +0.3 4,463,276 - -0.6 4,463,287 + -0.1 4,463,295 - -2.2 4,463,295 - -0.1 4,463,301 + +1.2 4,463,301 + +0.5 4,463,306 + +0.9 4,463,350 + -0.1 4,463,379 - +2.0 4,463,392 - GFF4469 0.13 -1.6 4,463,470 + GFF4469 0.38 +0.0 4,463,473 - GFF4469 0.39 -0.6 4,463,478 - GFF4469 0.40 +0.9 4,463,494 + GFF4469 0.45 -0.1 4,463,496 + GFF4469 0.46 -0.4 4,463,496 + GFF4469 0.46 +0.3 4,463,542 - GFF4469 0.60 +0.9 4,463,556 - GFF4469 0.64 -1.6 4,463,573 - GFF4469 0.70 +1.2 4,463,574 + GFF4469 0.70 -0.2 4,463,579 + GFF4469 0.72 -1.0 4,463,661 + +0.2 4,463,725 - -0.7 4,463,735 - -0.2 4,463,742 + +1.0 4,463,750 - +0.3 4,463,764 - GFF4470 0.15 -0.4 4,463,797 - GFF4470 0.30 -0.4 4,463,805 - GFF4470 0.34 +1.0 4,463,841 - GFF4470 0.50 -0.2 4,463,860 + GFF4470 0.59 +0.4 4,463,868 - GFF4470 0.62 -1.0 4,463,868 - GFF4470 0.62 -1.6 4,463,868 - GFF4470 0.62 +0.9 4,463,868 - GFF4470 0.62 +1.3 4,463,868 - GFF4470 0.62 +0.4 4,463,868 - GFF4470 0.62 -1.5 4,463,868 - GFF4470 0.62 -0.2 4,463,877 + GFF4470 0.66 -0.6 4,463,878 - GFF4470 0.67 +0.4 4,463,882 + GFF4470 0.68 +0.7 4,463,896 - GFF4470 0.75 -0.6 4,463,898 - GFF4470 0.76 +2.1 4,463,902 + GFF4470 0.77 +0.2 4,463,917 + GFF4470 0.84 +0.6 4,463,925 - GFF4470 0.88 -0.1 4,463,968 + +1.4 4,463,983 - +0.5 4,463,984 + -1.4 4,463,992 - +0.9 4,464,001 - GFF4471 0.11 -0.4 4,464,014 + GFF4471 0.14 -1.3 4,464,044 + GFF4471 0.20 -1.5 4,464,073 - GFF4471 0.26 +0.7 4,464,090 - GFF4471 0.30 -0.6 4,464,156 + GFF4471 0.43 +1.0 4,464,164 - GFF4471 0.45 -0.2 4,464,166 + GFF4471 0.45 +0.8 4,464,173 + GFF4471 0.47 -0.5 4,464,183 + GFF4471 0.49 -0.6 4,464,183 + GFF4471 0.49 +0.1 4,464,183 + GFF4471 0.49 +0.1 4,464,183 + GFF4471 0.49 -0.4 4,464,185 - GFF4471 0.49 -0.4 4,464,191 - GFF4471 0.51 -2.1 4,464,191 - GFF4471 0.51 +0.0 4,464,243 - GFF4471 0.61 -0.6 4,464,246 + GFF4471 0.62 +1.3 4,464,262 - GFF4471 0.65 +0.1 4,464,262 - GFF4471 0.65 +1.6 4,464,281 - GFF4471 0.69 +0.8 4,464,281 - GFF4471 0.69 +0.7 4,464,316 + GFF4471 0.77 -0.6 4,464,324 - GFF4471 0.78 -0.8 4,464,333 + GFF4471 0.80 +1.4 4,464,348 + GFF4471 0.83 +1.0 4,464,349 - GFF4471 0.84 +0.9 4,464,363 - GFF4471 0.86 +0.1 4,464,380 + +0.8 4,464,388 - +0.3 4,464,388 - +0.2 4,464,388 - -0.9 4,464,452 + +0.2 4,464,464 + +0.5 4,464,465 - +1.0 4,464,465 - -0.6 4,464,524 - +0.4 4,464,524 - +0.4 4,464,530 + +1.0 4,464,538 - -2.0 4,464,603 + GFF4472 0.10 -0.9 4,464,603 + GFF4472 0.10 -0.6 4,464,666 + GFF4472 0.28 -0.2 4,464,675 + GFF4472 0.30 +0.6 4,464,676 - GFF4472 0.31 -0.4 4,464,702 + GFF4472 0.38 -1.8 4,464,702 + GFF4472 0.38 -0.9 4,464,702 + GFF4472 0.38 -1.6 4,464,702 + GFF4472 0.38 +0.9 4,464,710 - GFF4472 0.40 +0.0 4,464,710 - GFF4472 0.40 -0.3 4,464,710 - GFF4472 0.40 -0.7 4,464,717 + GFF4472 0.42 +0.6 4,464,737 + GFF4472 0.47 -0.9 4,464,738 + GFF4472 0.48 -0.8 4,464,773 - GFF4472 0.57 -1.4 4,464,773 - GFF4472 0.57 -1.7 4,464,787 + GFF4472 0.61 +0.7 4,464,795 - GFF4472 0.64 -0.8 4,464,809 + GFF4472 0.68 -0.5 4,464,831 + GFF4472 0.74 -0.6 4,464,831 + GFF4472 0.74 -2.5 4,464,831 + GFF4472 0.74 -1.9 4,464,831 + GFF4472 0.74 -0.4 4,464,839 - GFF4472 0.76 +0.6 4,464,839 - GFF4472 0.76 +0.4 4,464,839 - GFF4472 0.76 -1.1 4,464,839 - GFF4472 0.76 -1.4 4,464,841 + GFF4472 0.76 -0.5 4,464,841 + GFF4472 0.76 -0.5 4,464,849 - GFF4472 0.79 +1.4 4,464,857 + GFF4472 0.81 +0.6 4,464,903 + -0.4 4,464,931 + -0.6 4,464,943 + -2.1 4,464,945 + +0.9 4,464,945 + +1.2 4,464,951 - -0.6 4,464,999 + +0.6 4,464,999 + +0.0 4,464,999 + +0.4 4,464,999 + +1.6 4,465,007 - +0.0 4,465,008 - +1.3 4,465,013 + -0.7 4,465,071 + +0.0 4,465,083 + -0.1 4,465,096 + +1.4 4,465,130 + +1.6 4,465,130 + -0.4 4,465,138 - -0.2 4,465,149 + +0.9 4,465,157 - +0.4 4,465,157 - -0.0 4,465,164 + +0.7 4,465,177 - +0.4 4,465,183 + -0.6 4,465,216 - +0.8 4,465,237 + -0.8 4,465,260 - -1.7 4,465,270 + -0.8 4,465,307 + +1.1 4,465,310 - -0.3 4,465,310 - -0.9 4,465,326 + -0.5 4,465,337 + -0.1 4,465,339 + +1.3 4,465,345 - -1.1 4,465,345 - +0.7 4,465,352 - +0.5 4,465,361 + +0.3 4,465,367 + +2.3 4,465,369 - -0.4 4,465,371 + -2.6 4,465,372 + +0.2 4,465,372 + -0.4 4,465,372 + +0.4 4,465,372 + +1.4 4,465,375 - -1.1 4,465,379 + +1.4 4,465,380 - +0.4 4,465,392 + +0.9 4,465,392 + +0.2 4,465,392 + -0.0 4,465,392 + +1.8 4,465,392 + -2.3 4,465,392 + +0.1 4,465,392 + -0.4 4,465,392 + +1.4 4,465,392 + -0.2 4,465,392 + -0.7 4,465,392 + +1.4 4,465,392 + +1.1 4,465,392 + +1.4 4,465,392 + +0.8 4,465,392 + +0.4 4,465,392 + +0.6 4,465,392 + +0.3 4,465,392 + +1.3 4,465,400 - +0.6 4,465,400 - -0.8 4,465,400 - +0.4 4,465,400 - -0.4 4,465,400 - -1.1 4,465,400 - +0.4 4,465,400 - -1.8 4,465,400 - +0.0 4,465,400 - +0.6 4,465,400 - -0.4 4,465,400 - +1.0 4,465,400 - +0.3 4,465,400 - -0.1 4,465,400 - -0.2 4,465,400 - +0.2 4,465,400 - +0.1 4,465,400 - +0.0 4,465,400 - +0.7 4,465,400 - -1.1 4,465,400 - -0.2 4,465,400 - +0.7 4,465,412 - -0.3 4,465,420 + +0.6
Or see this region's nucleotide sequence