Strain Fitness in Sphingobium sp. HT1-2 around GFF4458

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,453,019	+		GFF4456	0.84	+0.5
4,453,060	-		GFF4456	0.86	+0.9
4,453,136	+				+0.6
4,453,136	+				+1.9
4,453,141	+				+0.4
4,453,179	-				+0.7
4,453,218	+				-0.4
4,453,226	-				+0.9
4,453,226	-				+0.5
4,453,235	+				-1.1
4,453,262	+				+1.2
4,453,266	-				-0.8
4,453,367	-				+0.2
4,453,369	+				+0.2
4,453,375	+				+1.6
4,453,377	-				+0.7
4,453,532	+				-0.7
4,453,533	+				-0.1
4,453,533	+				+0.2
4,453,535	-				+0.2
4,453,588	+		GFF4457	0.21	+0.8
4,453,596	-		GFF4457	0.24	+0.8
4,453,596	-		GFF4457	0.24	-0.6
4,453,596	-		GFF4457	0.24	-0.2
4,453,623	-		GFF4457	0.32	+0.7
4,453,623	-		GFF4457	0.32	+0.9
4,453,627	-		GFF4457	0.33	-1.4
4,453,696	+		GFF4457	0.54	-0.1
4,453,696	+		GFF4457	0.54	-0.1
4,453,698	-		GFF4457	0.55	+0.0
4,453,700	+		GFF4457	0.55	+0.2
4,453,704	-		GFF4457	0.56	+0.3
4,453,704	-		GFF4457	0.56	+0.4
4,453,708	-		GFF4457	0.58	+0.5
4,453,708	-		GFF4457	0.58	+0.1
4,453,720	-		GFF4457	0.61	-1.4
4,453,723	+		GFF4457	0.62	+1.0
4,453,767	+		GFF4457	0.75	-0.8
4,453,768	+		GFF4457	0.76	+0.0
4,453,768	+		GFF4457	0.76	+0.1
4,453,774	-		GFF4457	0.78	+0.5
4,453,776	-		GFF4457	0.78	-2.6
4,453,776	-		GFF4457	0.78	+0.3
4,453,776	-		GFF4457	0.78	+0.2
4,453,776	-		GFF4457	0.78	-0.7
4,453,776	-		GFF4457	0.78	+0.7
4,453,776	-		GFF4457	0.78	-0.3
4,453,776	-		GFF4457	0.78	+1.8
4,453,776	-		GFF4457	0.78	+0.0
4,453,812	+		GFF4457	0.89	-1.9
4,453,812	+		GFF4457	0.89	-0.3
4,453,817	+				+1.4
4,453,857	-				+0.3
4,453,857	-				+0.4
4,453,864	-				-1.6
4,453,873	-				+1.7
4,453,914	+				+0.4
4,453,917	-				+0.6
4,453,917	-				-0.2
4,453,935	-				+0.8
4,453,956	+				+0.8
4,453,963	+				+0.2
4,453,971	-				-0.3
4,453,994	-				+0.7
4,454,014	-				-0.7
4,454,021	+				-1.0
4,454,021	+				+0.0
4,454,021	+				-0.3
4,454,038	+		GFF4458	0.10	+0.2
4,454,044	-		GFF4458	0.12	-1.0
4,454,054	+		GFF4458	0.14	+1.5
4,454,054	+		GFF4458	0.14	+1.0
4,454,090	+		GFF4458	0.23	-0.2
4,454,090	+		GFF4458	0.23	+0.6
4,454,090	+		GFF4458	0.23	-0.4
4,454,090	+		GFF4458	0.23	+0.6
4,454,098	-		GFF4458	0.25	+0.7
4,454,098	-		GFF4458	0.25	-1.3
4,454,098	-		GFF4458	0.25	-1.0
4,454,098	-		GFF4458	0.25	+0.5
4,454,098	-		GFF4458	0.25	-0.6
4,454,098	-		GFF4458	0.25	+0.9
4,454,109	+		GFF4458	0.28	+0.3
4,454,117	-		GFF4458	0.30	-3.3
4,454,117	-		GFF4458	0.30	+1.3
4,454,119	+		GFF4458	0.31	-0.2
4,454,143	+		GFF4458	0.37	-1.4
4,454,159	+		GFF4458	0.41	+0.4
4,454,162	-		GFF4458	0.41	-1.2
4,454,162	-		GFF4458	0.41	+0.1
4,454,165	-		GFF4458	0.42	+1.6
4,454,167	+		GFF4458	0.43	-0.8
4,454,178	+		GFF4458	0.45	-0.9
4,454,207	+		GFF4458	0.52	+0.2
4,454,212	+		GFF4458	0.54	+0.6
4,454,263	-		GFF4458	0.66	+0.7
4,454,267	-		GFF4458	0.67	+1.2
4,454,267	-		GFF4458	0.67	+0.4
4,454,277	-		GFF4458	0.70	+0.0
4,454,279	+		GFF4458	0.70	-0.1
4,454,279	-		GFF4458	0.70	-2.2
4,454,282	-		GFF4458	0.71	-2.2
4,454,287	-		GFF4458	0.72	-1.8
4,454,288	+		GFF4458	0.73	+0.5
4,454,292	-		GFF4458	0.74	+0.8
4,454,292	-		GFF4458	0.74	+0.3
4,454,292	-		GFF4458	0.74	+0.3
4,454,309	+		GFF4458	0.78	-0.1
4,454,317	-		GFF4458	0.80	+0.3
4,454,317	-		GFF4458	0.80	+0.8
4,454,317	-		GFF4458	0.80	-0.1
4,454,317	-		GFF4458	0.80	-0.9
4,454,323	-		GFF4458	0.81	+0.6
4,454,325	+		GFF4458	0.82	-0.2
4,454,328	-		GFF4458	0.83	-0.4
4,454,344	+		GFF4458	0.87	+0.4
4,454,344	+		GFF4458	0.87	+0.9
4,454,352	-		GFF4458	0.89	+0.4
4,454,352	-		GFF4458	0.89	-1.3
4,454,352	-		GFF4458	0.89	+0.6
4,454,352	-		GFF4458	0.89	+1.5
4,454,352	-		GFF4458	0.89	-0.2
4,454,356	-		GFF4458	0.90	-1.7
4,454,361	+				-0.4
4,454,369	-				+0.7
4,454,369	-				-1.3
4,454,369	-				+1.5
4,454,390	-				+0.2
4,454,403	+				+1.4
4,454,403	-				+0.7
4,454,403	-				+0.6
4,454,403	-				+0.4
4,454,411	+				+1.1
4,454,427	-				+0.1
4,454,474	+				+0.2
4,454,487	-				-0.3
4,454,488	+				+1.0
4,454,494	-				+0.9
4,454,509	+				-1.0
4,454,538	-				+1.4
4,454,545	+				-0.6
4,454,553	-				+0.7
4,454,556	+				+0.9
4,454,557	+				-2.4
4,454,565	-				-0.4
4,454,645	+				+0.7
4,454,645	+				+0.4
4,454,667	+				+0.3
4,454,675	-				-0.4
4,454,675	-				+1.0
4,454,677	-				+0.5
4,454,682	-				-1.0
4,454,701	+				-0.4
4,454,701	+				-1.8
4,454,709	-				+0.2
4,454,714	-				-0.4
4,454,714	-				+0.2
4,454,720	+				+0.5
4,454,728	-				+0.4
4,454,758	+		GFF4459	0.13	-0.2
4,454,769	-		GFF4459	0.16	-1.7
4,454,773	+		GFF4459	0.18	+1.0
4,454,799	+		GFF4459	0.27	+1.1
4,454,828	-		GFF4459	0.37	-0.5
4,454,837	+		GFF4459	0.40	+0.9
4,454,837	+		GFF4459	0.40	-0.1
4,454,845	+		GFF4459	0.43	-1.2
4,454,845	+		GFF4459	0.43	+0.4
4,454,845	-		GFF4459	0.43	-1.7
4,454,850	+		GFF4459	0.44	+0.2
4,454,850	+		GFF4459	0.44	+0.4
4,454,858	-		GFF4459	0.47	+0.6
4,454,858	-		GFF4459	0.47	+0.3
4,454,858	-		GFF4459	0.47	+1.2
4,454,858	-		GFF4459	0.47	+1.1
4,454,860	+		GFF4459	0.48	-0.9
4,454,860	+		GFF4459	0.48	-1.8
4,454,868	-		GFF4459	0.51	+1.1
4,454,908	-		GFF4459	0.64	+1.2
4,454,916	+		GFF4459	0.67	+1.5
4,454,947	-		GFF4459	0.78	-0.7
4,454,967	+		GFF4459	0.85	+1.0
4,455,019	-				-0.4
4,455,035	-				-0.6
4,455,039	-				-0.3
4,455,044	+				+1.0
4,455,075	+				-0.8
4,455,081	-				-0.3
4,455,106	-				+1.4
4,455,112	-				-1.8
4,455,118	+				-0.8
4,455,159	-				-1.1
4,455,185	-				+0.4
4,455,187	+				-0.4
4,455,230	+				+0.6
4,455,230	+				-0.8
4,455,238	-				+0.3
4,455,240	+		GFF4460	0.10	+1.0
4,455,248	-		GFF4460	0.17	+0.9
4,455,260	+		GFF4460	0.27	-0.6
4,455,326	-		GFF4460	0.84	-1.0
4,455,329	+		GFF4460	0.86	+0.4
4,455,337	-				+1.1
4,455,352	+				+0.5
4,455,388	+				-0.9
4,455,388	+				+1.4
4,455,393	+				+0.9
4,455,396	-				-1.5
4,455,396	-				+0.1