Strain Fitness in Sphingobium sp. HT1-2 around GFF4454

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,448,023	+				+0.1
4,448,031	-				-0.2
4,448,074	+		GFF4452	0.12	-0.9
4,448,113	+		GFF4452	0.17	-0.9
4,448,120	+		GFF4452	0.18	-1.3
4,448,120	+		GFF4452	0.18	+0.4
4,448,126	-		GFF4452	0.18	-0.3
4,448,130	+		GFF4452	0.19	-0.7
4,448,137	+		GFF4452	0.20	-0.2
4,448,137	+		GFF4452	0.20	-0.4
4,448,143	-		GFF4452	0.20	+0.8
4,448,145	-		GFF4452	0.21	-1.8
4,448,145	-		GFF4452	0.21	-0.2
4,448,157	+		GFF4452	0.22	+0.2
4,448,165	-		GFF4452	0.23	-0.7
4,448,172	+		GFF4452	0.24	+0.0
4,448,183	-		GFF4452	0.25	-2.1
4,448,190	-		GFF4452	0.26	+0.7
4,448,199	+		GFF4452	0.27	-0.2
4,448,247	-		GFF4452	0.33	+0.4
4,448,250	-		GFF4452	0.34	-0.5
4,448,253	+		GFF4452	0.34	-1.7
4,448,329	+		GFF4452	0.44	+0.4
4,448,332	+		GFF4452	0.44	+0.0
4,448,385	+		GFF4452	0.50	-0.9
4,448,385	+		GFF4452	0.50	+0.1
4,448,388	-		GFF4452	0.51	+0.3
4,448,393	-		GFF4452	0.51	-1.0
4,448,393	-		GFF4452	0.51	+0.8
4,448,393	-		GFF4452	0.51	+0.7
4,448,400	+		GFF4452	0.52	+0.9
4,448,420	+		GFF4452	0.55	-0.2
4,448,452	+		GFF4452	0.59	+1.4
4,448,452	-		GFF4452	0.59	+1.1
4,448,482	+		GFF4452	0.63	+1.4
4,448,490	-		GFF4452	0.64	+0.3
4,448,508	+		GFF4452	0.66	+0.8
4,448,513	+		GFF4452	0.66	+0.5
4,448,513	+		GFF4452	0.66	-0.8
4,448,513	+		GFF4452	0.66	-0.9
4,448,513	+		GFF4452	0.66	+0.1
4,448,513	+		GFF4452	0.66	-0.3
4,448,513	+		GFF4452	0.66	-1.0
4,448,513	+		GFF4452	0.66	-1.1
4,448,513	+		GFF4452	0.66	-1.5
4,448,515	+		GFF4452	0.67	+0.6
4,448,521	-		GFF4452	0.67	+0.3
4,448,521	-		GFF4452	0.67	+0.4
4,448,521	-		GFF4452	0.67	+1.2
4,448,521	-		GFF4452	0.67	-1.8
4,448,521	-		GFF4452	0.67	+0.2
4,448,521	-		GFF4452	0.67	-1.3
4,448,521	-		GFF4452	0.67	+0.8
4,448,526	+		GFF4452	0.68	+1.0
4,448,538	+		GFF4452	0.70	+0.5
4,448,538	+		GFF4452	0.70	-0.1
4,448,541	-		GFF4452	0.70	-1.2
4,448,541	-		GFF4452	0.70	-0.6
4,448,546	-		GFF4452	0.71	+1.7
4,448,546	-		GFF4452	0.71	+0.1
4,448,546	-		GFF4452	0.71	-1.9
4,448,549	+		GFF4452	0.71	-1.0
4,448,549	+		GFF4452	0.71	+0.4
4,448,551	-		GFF4452	0.71	+0.8
4,448,556	-		GFF4452	0.72	-0.4
4,448,595	+		GFF4452	0.77	-1.6
4,448,595	+		GFF4452	0.77	+0.3
4,448,638	+		GFF4452	0.82	+0.1
4,448,705	-				-0.3
4,448,707	+				+0.3
4,448,712	-				-0.2
4,448,715	-				-0.4
4,448,715	-				-0.7
4,448,746	+				+1.2
4,448,756	+				-0.8
4,448,757	+				-1.5
4,448,757	+				-0.7
4,448,777	+				+0.4
4,448,777	+				+1.2
4,448,785	-				+0.6
4,448,792	+				+0.3
4,448,792	+				+0.2
4,448,794	+				+1.0
4,448,794	+				-1.9
4,448,794	+				+1.0
4,448,799	-				-1.7
4,448,799	-				+0.1
4,448,800	-				-1.3
4,448,801	+				+0.1
4,448,802	-				-2.0
4,448,816	+		GFF4453	0.12	+0.5
4,448,824	+		GFF4453	0.16	+0.4
4,448,824	+		GFF4453	0.16	-0.5
4,448,832	-		GFF4453	0.20	+0.3
4,448,832	-		GFF4453	0.20	-0.2
4,448,850	-		GFF4453	0.28	-1.7
4,448,858	-		GFF4453	0.32	+0.5
4,448,867	+		GFF4453	0.36	+0.9
4,448,918	-		GFF4453	0.60	+0.6
4,448,923	-		GFF4453	0.62	-1.1
4,448,923	-		GFF4453	0.62	+0.6
4,448,925	-		GFF4453	0.63	-0.1
4,448,928	-		GFF4453	0.64	-0.9
4,448,932	+		GFF4453	0.66	+0.0
4,448,934	-		GFF4453	0.67	-1.7
4,448,940	-		GFF4453	0.70	-0.5
4,448,940	-		GFF4453	0.70	+0.1
4,448,969	+				+0.7
4,448,971	-				+0.8
4,449,010	-				+0.9
4,449,042	-				-0.2
4,449,050	-				-0.4
4,449,054	+				-1.7
4,449,066	+				+1.1
4,449,082	+				+0.3
4,449,082	+				+0.1
4,449,082	+				-0.7
4,449,089	+				+0.0
4,449,089	+				-0.5
4,449,089	+				-0.8
4,449,090	-				-0.6
4,449,092	+				-0.2
4,449,097	-				+0.8
4,449,097	-				+0.2
4,449,098	-				-1.1
4,449,118	+				+1.0
4,449,126	-				+0.8
4,449,186	+		GFF4454	0.13	-1.2
4,449,191	+		GFF4454	0.13	-0.7
4,449,202	-		GFF4454	0.14	+0.7
4,449,243	+		GFF4454	0.16	-0.5
4,449,243	+		GFF4454	0.16	-0.6
4,449,251	-		GFF4454	0.17	+0.7
4,449,273	+		GFF4454	0.18	-0.4
4,449,273	+		GFF4454	0.18	+0.0
4,449,273	+		GFF4454	0.18	+0.0
4,449,332	-		GFF4454	0.22	+0.3
4,449,332	-		GFF4454	0.22	-0.7
4,449,332	-		GFF4454	0.22	-1.6
4,449,341	+		GFF4454	0.22	+1.5
4,449,349	-		GFF4454	0.23	+0.2
4,449,368	-		GFF4454	0.24	+1.4
4,449,368	-		GFF4454	0.24	+0.1
4,449,385	+		GFF4454	0.25	+0.1
4,449,393	-		GFF4454	0.25	+0.6
4,449,427	+		GFF4454	0.27	+0.9
4,449,427	+		GFF4454	0.27	+0.1
4,449,443	+		GFF4454	0.28	-1.1
4,449,456	+		GFF4454	0.29	-0.3
4,449,466	+		GFF4454	0.30	-1.7
4,449,471	+		GFF4454	0.30	+0.5
4,449,471	+		GFF4454	0.30	+0.8
4,449,474	-		GFF4454	0.30	+0.1
4,449,474	-		GFF4454	0.30	+0.0
4,449,484	-		GFF4454	0.31	+0.4
4,449,509	+		GFF4454	0.32	-0.1
4,449,528	-		GFF4454	0.33	-0.9
4,449,535	-		GFF4454	0.34	-2.4
4,449,572	+		GFF4454	0.36	-1.1
4,449,575	-		GFF4454	0.36	-0.5
4,449,580	-		GFF4454	0.36	+1.5
4,449,580	-		GFF4454	0.36	+1.6
4,449,618	+		GFF4454	0.38	+0.7
4,449,621	-		GFF4454	0.39	-0.1
4,449,621	-		GFF4454	0.39	-0.1
4,449,626	-		GFF4454	0.39	-0.5
4,449,644	+		GFF4454	0.40	-1.6
4,449,676	+		GFF4454	0.42	-1.9
4,449,677	+		GFF4454	0.42	+0.5
4,449,697	-		GFF4454	0.43	-0.6
4,449,713	+		GFF4454	0.44	+0.0
4,449,723	+		GFF4454	0.45	-0.8
4,449,723	+		GFF4454	0.45	+1.2
4,449,723	+		GFF4454	0.45	+0.1
4,449,731	-		GFF4454	0.45	-1.4
4,449,749	+		GFF4454	0.46	-0.7
4,449,749	+		GFF4454	0.46	+0.0
4,449,757	-		GFF4454	0.47	+0.4
4,449,766	-		GFF4454	0.47	+1.4
4,449,789	-		GFF4454	0.48	-1.2
4,449,811	-		GFF4454	0.50	-0.1
4,449,815	-		GFF4454	0.50	+0.0
4,449,850	+		GFF4454	0.52	-1.4
4,449,855	+		GFF4454	0.52	+2.0
4,449,858	-		GFF4454	0.52	-0.7
4,449,876	+		GFF4454	0.54	+0.9
4,449,911	+		GFF4454	0.56	-0.6
4,449,919	-		GFF4454	0.56	+1.5
4,449,921	+		GFF4454	0.56	-0.3
4,449,921	+		GFF4454	0.56	+2.0
4,449,925	+		GFF4454	0.56	+1.2
4,449,925	+		GFF4454	0.56	+1.1
4,449,925	+		GFF4454	0.56	+1.0
4,449,925	+		GFF4454	0.56	-1.9
4,449,929	-		GFF4454	0.57	+0.2
4,449,929	-		GFF4454	0.57	-0.9
4,449,932	-		GFF4454	0.57	-0.4
4,449,933	-		GFF4454	0.57	-1.6
4,449,933	-		GFF4454	0.57	+0.2
4,449,933	-		GFF4454	0.57	-0.9
4,449,933	-		GFF4454	0.57	+0.6
4,449,933	-		GFF4454	0.57	+0.1
4,449,933	-		GFF4454	0.57	+0.8
4,449,950	+		GFF4454	0.58	-0.3
4,449,969	+		GFF4454	0.59	-0.6
4,449,979	+		GFF4454	0.60	-0.1
4,450,009	+		GFF4454	0.61	+0.9
4,450,009	+		GFF4454	0.61	+0.5
4,450,009	+		GFF4454	0.61	+1.0
4,450,017	-		GFF4454	0.62	+0.8
4,450,078	+		GFF4454	0.65	+0.6
4,450,142	+		GFF4454	0.69	+0.2
4,450,172	+		GFF4454	0.71	-0.1
4,450,205	+		GFF4454	0.73	+0.5
4,450,205	+		GFF4454	0.73	+0.1
4,450,232	+		GFF4454	0.74	+0.7
4,450,261	-		GFF4454	0.76	+0.7
4,450,269	+		GFF4454	0.77	-0.9
4,450,282	+		GFF4454	0.77	+0.7
4,450,288	+		GFF4454	0.78	-0.3
4,450,290	-		GFF4454	0.78	-0.5
4,450,297	-		GFF4454	0.78	+0.1
4,450,331	+		GFF4454	0.80	+0.5
4,450,360	+		GFF4454	0.82	-0.7
4,450,383	+		GFF4454	0.83	+0.5
4,450,391	-		GFF4454	0.84	+1.9
4,450,391	-		GFF4454	0.84	+1.0
4,450,391	-		GFF4454	0.84	+0.9
4,450,405	+		GFF4454	0.85	+0.2
4,450,413	-		GFF4454	0.85	-0.4
4,450,415	-		GFF4454	0.85	+0.0
4,450,415	-		GFF4454	0.85	+1.4
4,450,437	+		GFF4454	0.86	+1.0
4,450,445	-		GFF4454	0.87	+0.2
4,450,532	+				+0.5
4,450,532	+				-0.3
4,450,535	+				+0.5
4,450,537	+				-0.2
4,450,540	+				+0.3
4,450,548	-				-0.2
4,450,559	+				+0.9
4,450,578	-				+0.2
4,450,618	+				+0.1
4,450,626	-				-0.9
4,450,654	+				-0.4
4,450,664	+				+0.3
4,450,669	+				-0.4
4,450,672	-				+0.7
4,450,687	+				+0.2
4,450,703	+				+0.8
4,450,763	+				-0.1
4,450,763	-				+1.3
4,450,763	-				-1.1
4,450,765	+				+0.0
4,450,765	+				-1.5
4,450,773	-				+0.9
4,450,773	-				+1.2
4,450,784	+				-0.2
4,450,791	+				+0.1
4,450,797	+		GFF4455	0.10	+0.0
4,450,799	-		GFF4455	0.10	+0.8
4,450,799	-		GFF4455	0.10	-0.5
4,450,799	-		GFF4455	0.10	+0.0
4,450,799	-		GFF4455	0.10	+0.4
4,450,799	-		GFF4455	0.10	+0.7
4,450,805	-		GFF4455	0.11	+0.4
4,450,805	-		GFF4455	0.11	-0.0
4,450,805	-		GFF4455	0.11	-0.2
4,450,832	-		GFF4455	0.13	-0.1
4,450,834	+		GFF4455	0.14	-0.4
4,450,867	+		GFF4455	0.17	+0.8
4,450,867	+		GFF4455	0.17	-0.0
4,450,867	+		GFF4455	0.17	+1.8
4,450,867	+		GFF4455	0.17	+0.2
4,450,867	+		GFF4455	0.17	-1.5
4,450,867	+		GFF4455	0.17	+1.0
4,450,870	-		GFF4455	0.17	-0.3
4,450,870	-		GFF4455	0.17	+0.9
4,450,875	-		GFF4455	0.18	-0.2
4,450,875	-		GFF4455	0.18	-2.8
4,450,875	-		GFF4455	0.18	+0.8
4,450,875	-		GFF4455	0.18	-1.7
4,450,875	-		GFF4455	0.18	+0.1
4,450,875	-		GFF4455	0.18	+0.5
4,450,875	-		GFF4455	0.18	-2.1
4,450,875	-		GFF4455	0.18	+0.0
4,450,875	-		GFF4455	0.18	-1.5
4,450,875	-		GFF4455	0.18	+0.5
4,450,875	-		GFF4455	0.18	+0.9
4,450,875	-		GFF4455	0.18	-0.7
4,450,875	-		GFF4455	0.18	-1.4
4,450,875	-		GFF4455	0.18	-0.5
4,450,875	-		GFF4455	0.18	+0.0
4,450,882	+		GFF4455	0.18	+0.2
4,450,885	-		GFF4455	0.19	-0.3
4,450,885	-		GFF4455	0.19	-0.6
4,450,887	+		GFF4455	0.19	-0.3
4,450,887	+		GFF4455	0.19	+0.9
4,450,895	-		GFF4455	0.20	-0.1
4,450,896	+		GFF4455	0.20	+0.2
4,450,897	-		GFF4455	0.20	-1.7
4,450,944	-		GFF4455	0.24	+0.4
4,450,949	+		GFF4455	0.25	-0.2
4,450,949	+		GFF4455	0.25	-1.4
4,450,957	-		GFF4455	0.26	+0.5
4,450,957	-		GFF4455	0.26	+0.5
4,450,957	-		GFF4455	0.26	+0.1
4,450,990	+		GFF4455	0.29	-1.8
4,450,993	-		GFF4455	0.29	+0.2
4,450,998	-		GFF4455	0.30	-0.8
4,451,003	-		GFF4455	0.30	-0.2
4,451,033	+		GFF4455	0.33	-1.8
4,451,043	+		GFF4455	0.34	+0.7
4,451,050	+		GFF4455	0.35	+0.1
4,451,051	-		GFF4455	0.35	-2.1
4,451,051	-		GFF4455	0.35	-0.9
4,451,051	-		GFF4455	0.35	+0.3
4,451,058	-		GFF4455	0.35	-0.2
4,451,071	+		GFF4455	0.37	-0.1
4,451,071	+		GFF4455	0.37	+2.0
4,451,077	+		GFF4455	0.37	-0.4
4,451,077	+		GFF4455	0.37	+1.1
4,451,089	+		GFF4455	0.38	+0.1
4,451,090	-		GFF4455	0.39	-1.7
4,451,092	+		GFF4455	0.39	+0.4
4,451,124	-		GFF4455	0.42	+1.3
4,451,136	+		GFF4455	0.43	-0.4
4,451,145	+		GFF4455	0.44	+0.0
4,451,145	-		GFF4455	0.44	-1.1
4,451,177	-		GFF4455	0.47	+1.4
4,451,200	+		GFF4455	0.49	-0.9
4,451,206	+		GFF4455	0.50	-1.7
4,451,232	-		GFF4455	0.52	-0.9
4,451,234	+		GFF4455	0.53	-1.9
4,451,242	-		GFF4455	0.53	-0.5
4,451,242	-		GFF4455	0.53	-0.6
4,451,243	+		GFF4455	0.54	+1.5
4,451,243	+		GFF4455	0.54	+0.6
4,451,249	-		GFF4455	0.54	+1.2
4,451,283	-		GFF4455	0.57	+0.5
4,451,283	-		GFF4455	0.57	-1.3
4,451,308	-		GFF4455	0.60	+0.0
4,451,373	+		GFF4455	0.66	-1.3
4,451,383	-		GFF4455	0.67	+0.6
4,451,383	-		GFF4455	0.67	+0.3
4,451,391	-		GFF4455	0.68	+0.6
4,451,391	-		GFF4455	0.68	-0.4
4,451,395	+		GFF4455	0.68	+0.7
4,451,415	-		GFF4455	0.70	-0.9
4,451,428	+		GFF4455	0.72	-2.1
4,451,435	+		GFF4455	0.72	-0.9
4,451,439	+		GFF4455	0.73	+0.4
4,451,439	+		GFF4455	0.73	+1.8
4,451,439	+		GFF4455	0.73	-1.1
4,451,439	+		GFF4455	0.73	+0.0
4,451,439	+		GFF4455	0.73	+1.0
4,451,447	-		GFF4455	0.73	-2.1
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4,451,447	-		GFF4455	0.73	-1.8
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4,451,462	-		GFF4455	0.75	+0.5
4,451,477	+		GFF4455	0.76	-1.2
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4,451,569	+		GFF4455	0.85	-1.0
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4,451,584	+		GFF4455	0.87	-0.9
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4,451,597	-		GFF4455	0.88	+0.3
4,451,597	-		GFF4455	0.88	-0.7
4,451,608	+		GFF4455	0.89	-2.0
4,451,618	+				+1.1
4,451,621	-				-1.7
4,451,621	-				-1.0
4,451,624	+				+0.0
4,451,629	+				+0.2
4,451,629	+				+0.8
4,451,629	+				-2.3
4,451,632	-				-0.6
4,451,637	-				-0.0
4,451,637	-				+0.0
4,451,637	-				-0.3
4,451,637	-				-0.4
4,451,643	+				-0.6
4,451,667	+				+0.4