Strain Fitness in Sphingobium sp. HT1-2 around GFF4444

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,438,015	+		GFF4441	0.58	-0.2
4,438,033	-		GFF4441	0.59	+1.1
4,438,033	-		GFF4441	0.59	-0.1
4,438,033	-		GFF4441	0.59	+0.4
4,438,047	+		GFF4441	0.61	+0.4
4,438,051	+		GFF4441	0.61	+0.7
4,438,052	+		GFF4441	0.61	+0.1
4,438,055	-		GFF4441	0.62	+0.0
4,438,055	-		GFF4441	0.62	-1.7
4,438,055	-		GFF4441	0.62	-0.9
4,438,057	+		GFF4441	0.62	+0.6
4,438,076	+		GFF4441	0.64	-0.2
4,438,084	-		GFF4441	0.64	+0.4
4,438,084	-		GFF4441	0.64	+0.0
4,438,092	-		GFF4441	0.65	+0.8
4,438,099	+		GFF4441	0.66	-0.7
4,438,102	+		GFF4441	0.66	+0.0
4,438,102	+		GFF4441	0.66	-0.8
4,438,102	+		GFF4441	0.66	-0.2
4,438,102	+		GFF4441	0.66	-1.2
4,438,107	+		GFF4441	0.67	+0.9
4,438,108	+		GFF4441	0.67	+1.1
4,438,110	-		GFF4441	0.67	+1.4
4,438,110	-		GFF4441	0.67	-1.8
4,438,110	-		GFF4441	0.67	+0.4
4,438,110	-		GFF4441	0.67	-0.3
4,438,118	-		GFF4441	0.68	+0.1
4,438,123	+		GFF4441	0.68	+0.5
4,438,123	+		GFF4441	0.68	-0.2
4,438,123	+		GFF4441	0.68	+1.3
4,438,123	+		GFF4441	0.68	-2.0
4,438,123	+		GFF4441	0.68	-0.2
4,438,123	+		GFF4441	0.68	-0.5
4,438,123	+		GFF4441	0.68	+0.3
4,438,131	-		GFF4441	0.69	+0.1
4,438,131	-		GFF4441	0.69	-0.3
4,438,131	-		GFF4441	0.69	-0.4
4,438,131	-		GFF4441	0.69	-1.1
4,438,131	-		GFF4441	0.69	-0.6
4,438,131	-		GFF4441	0.69	-1.1
4,438,139	-		GFF4441	0.70	-0.6
4,438,155	+		GFF4441	0.71	-0.7
4,438,155	+		GFF4441	0.71	+1.0
4,438,155	+		GFF4441	0.71	-2.3
4,438,155	+		GFF4441	0.71	-0.7
4,438,155	+		GFF4441	0.71	+1.4
4,438,191	+		GFF4441	0.75	-0.7
4,438,193	+		GFF4441	0.75	-0.3
4,438,201	-		GFF4441	0.76	-0.2
4,438,201	-		GFF4441	0.76	-0.3
4,438,201	-		GFF4441	0.76	-0.6
4,438,203	+		GFF4441	0.76	-1.6
4,438,206	-		GFF4441	0.76	-0.2
4,438,217	+		GFF4441	0.77	+0.5
4,438,224	-		GFF4441	0.78	+0.7
4,438,229	+		GFF4441	0.78	-1.2
4,438,229	+		GFF4441	0.78	+1.2
4,438,229	+		GFF4441	0.78	-1.5
4,438,229	+		GFF4441	0.78	-0.5
4,438,229	+		GFF4441	0.78	-0.2
4,438,229	+		GFF4441	0.78	-1.3
4,438,229	+		GFF4441	0.78	-1.5
4,438,229	+		GFF4441	0.78	-0.9
4,438,229	+		GFF4441	0.78	+0.1
4,438,229	+		GFF4441	0.78	+0.0
4,438,229	+		GFF4441	0.78	-0.6
4,438,236	+		GFF4441	0.79	+0.2
4,438,237	-		GFF4441	0.79	+0.5
4,438,237	-		GFF4441	0.79	+0.6
4,438,237	-		GFF4441	0.79	-1.8
4,438,237	-		GFF4441	0.79	-1.5
4,438,237	-		GFF4441	0.79	-2.6
4,438,237	-		GFF4441	0.79	-1.6
4,438,237	-		GFF4441	0.79	-0.6
4,438,237	-		GFF4441	0.79	-1.4
4,438,243	-		GFF4441	0.80	-0.2
4,438,244	-		GFF4441	0.80	-0.3
4,438,246	+		GFF4441	0.80	-1.1
4,438,254	-		GFF4441	0.81	-2.3
4,438,254	-		GFF4441	0.81	-0.0
4,438,257	+		GFF4441	0.81	+0.6
4,438,265	-		GFF4441	0.82	-1.5
4,438,278	+		GFF4441	0.83	-0.6
4,438,292	-		GFF4441	0.84	-0.4
4,438,292	-		GFF4441	0.84	-0.2
4,438,296	-		GFF4441	0.85	-0.6
4,438,296	-		GFF4441	0.85	-1.4
4,438,297	-		GFF4441	0.85	-0.3
4,438,306	+		GFF4441	0.86	+0.0
4,438,314	+		GFF4441	0.86	+0.7
4,438,314	+		GFF4441	0.86	-1.8
4,438,314	+		GFF4441	0.86	-1.1
4,438,322	-		GFF4441	0.87	-1.6
4,438,322	-		GFF4441	0.87	+0.5
4,438,336	-		GFF4441	0.89	+0.8
4,438,346	+		GFF4441	0.89	-0.8
4,438,354	-				-1.2
4,438,361	+				-0.7
4,438,361	+				-0.7
4,438,361	+				+0.4
4,438,361	+				-1.0
4,438,361	-				+0.5
4,438,361	-				+0.4
4,438,369	-				-2.5
4,438,369	-				+0.6
4,438,376	+				-0.9
4,438,376	+				+0.2
4,438,376	+				+1.0
4,438,376	+				-0.4
4,438,376	+				-0.2
4,438,379	-				+1.2
4,438,379	-				+1.5
4,438,384	-				-0.1
4,438,384	-				-0.3
4,438,404	+				+1.6
4,438,404	+				+1.1
4,438,412	-				-0.1
4,438,473	-				-0.5
4,438,474	-				-0.7
4,438,871	+				+0.9
4,438,871	+				-0.7
4,438,871	+				+2.8
4,438,930	+				-0.2
4,438,935	+				+0.3
4,438,936	-				+1.2
4,438,936	-				+0.6
4,438,937	-				-0.3
4,438,938	-				+0.5
4,438,943	-				+1.3
4,438,943	-				+0.8
4,438,948	+				-0.6
4,438,958	+				-0.0
4,438,966	-				-0.2
4,438,966	-				+0.7
4,438,966	-				+0.3
4,438,983	-				-0.4
4,439,032	+				-0.3
4,439,034	+				+0.5
4,439,034	+				-0.9
4,439,042	-				-2.3
4,439,044	+				+0.3
4,439,044	+				+0.2
4,439,140	-		GFF4444	0.17	-0.7
4,439,140	-		GFF4444	0.17	+0.2
4,439,175	+		GFF4444	0.21	+0.6
4,439,207	-		GFF4444	0.25	-0.1
4,439,207	-		GFF4444	0.25	-1.1
4,439,269	-		GFF4444	0.32	-0.7
4,439,293	-		GFF4444	0.35	-1.9
4,439,301	+		GFF4444	0.36	-0.6
4,439,321	-		GFF4444	0.39	+0.1
4,439,323	+		GFF4444	0.39	-0.8
4,439,323	+		GFF4444	0.39	+0.0
4,439,331	+		GFF4444	0.40	-0.5
4,439,331	-		GFF4444	0.40	-0.1
4,439,332	+		GFF4444	0.40	+0.9
4,439,332	-		GFF4444	0.40	-0.9
4,439,340	-		GFF4444	0.41	-1.7
4,439,340	-		GFF4444	0.41	+1.9
4,439,340	-		GFF4444	0.41	+1.2
4,439,340	-		GFF4444	0.41	-0.7
4,439,374	-		GFF4444	0.45	+1.2
4,439,374	-		GFF4444	0.45	+0.8
4,439,389	+		GFF4444	0.47	+0.7
4,439,414	+		GFF4444	0.50	-2.1
4,439,414	+		GFF4444	0.50	-0.5
4,439,430	-		GFF4444	0.52	+0.3
4,439,454	+		GFF4444	0.55	+0.6
4,439,476	+		GFF4444	0.57	-0.4
4,439,476	+		GFF4444	0.57	+0.3
4,439,483	+		GFF4444	0.58	+1.0
4,439,484	-		GFF4444	0.58	+0.3
4,439,493	+		GFF4444	0.59	+0.0
4,439,525	-		GFF4444	0.63	-0.7
4,439,549	-		GFF4444	0.66	+0.6
4,439,599	-		GFF4444	0.72	+0.6
4,439,607	+		GFF4444	0.73	+0.3
4,439,615	-		GFF4444	0.74	+0.1
4,439,616	+		GFF4444	0.74	-1.2
4,439,635	-		GFF4444	0.76	+0.5
4,439,635	-		GFF4444	0.76	+0.4
4,439,663	+		GFF4444	0.80	-0.7
4,439,679	-		GFF4444	0.82	-0.3
4,439,710	+		GFF4444	0.85	-0.1
4,439,718	-		GFF4444	0.86	+0.4
4,439,718	-		GFF4444	0.86	+0.2
4,439,725	-		GFF4444	0.87	+0.1
4,439,739	+		GFF4444	0.89	+0.1
4,439,740	+		GFF4444	0.89	-0.5
4,439,777	-				+0.4
4,439,787	-				-1.3
4,439,787	-				-0.5
4,439,886	+				+0.1
4,439,887	+				-0.6
4,439,887	+				-0.7
4,439,888	-				+0.3
4,439,895	-				+0.2
4,439,922	+				+0.7
4,439,922	+				+0.0
4,439,927	+				-0.5
4,439,930	-				+0.3
4,439,932	-				+0.1
4,439,935	-				+1.4
4,439,935	-				-1.3
4,439,945	+				-0.1
4,439,955	-				+1.3
4,439,960	+		GFF4445	0.11	+0.5
4,439,968	-		GFF4445	0.12	+0.5
4,439,978	+		GFF4445	0.14	-1.6
4,440,016	+		GFF4445	0.20	+0.0
4,440,024	-		GFF4445	0.22	+0.5
4,440,040	+		GFF4445	0.25	+0.7
4,440,040	+		GFF4445	0.25	+0.6
4,440,040	+		GFF4445	0.25	-1.2
4,440,040	+		GFF4445	0.25	-1.5
4,440,040	+		GFF4445	0.25	+0.3
4,440,041	-		GFF4445	0.25	+0.5
4,440,048	-		GFF4445	0.26	-1.9
4,440,048	-		GFF4445	0.26	-2.3
4,440,049	-		GFF4445	0.26	+0.3
4,440,073	+		GFF4445	0.31	+0.3
4,440,073	+		GFF4445	0.31	+0.4
4,440,081	-		GFF4445	0.32	+0.4
4,440,103	-		GFF4445	0.36	+0.3
4,440,110	+		GFF4445	0.37	-0.8
4,440,145	+		GFF4445	0.43	+0.5
4,440,145	+		GFF4445	0.43	+0.8
4,440,147	-		GFF4445	0.44	+1.5
4,440,153	-		GFF4445	0.45	+0.9
4,440,155	-		GFF4445	0.45	+0.1
4,440,162	+		GFF4445	0.46	+1.3
4,440,162	+		GFF4445	0.46	+0.3
4,440,162	+		GFF4445	0.46	+1.8
4,440,162	+		GFF4445	0.46	+0.9
4,440,170	-		GFF4445	0.48	-1.7
4,440,170	-		GFF4445	0.48	+0.6
4,440,170	-		GFF4445	0.48	-0.7
4,440,170	-		GFF4445	0.48	-0.7
4,440,191	+		GFF4445	0.51	-0.6
4,440,200	-		GFF4445	0.53	+0.0
4,440,208	-		GFF4445	0.54	-0.7
4,440,215	+		GFF4445	0.56	+0.0
4,440,217	+		GFF4445	0.56	+0.9
4,440,223	-		GFF4445	0.57	-0.2
4,440,236	+		GFF4445	0.59	+0.1
4,440,244	-		GFF4445	0.61	+0.6
4,440,244	-		GFF4445	0.61	+0.0
4,440,245	+		GFF4445	0.61	+0.3
4,440,260	+		GFF4445	0.63	+1.1
4,440,266	-		GFF4445	0.65	+0.5
4,440,278	-		GFF4445	0.67	-0.5
4,440,285	+		GFF4445	0.68	-0.4
4,440,325	-		GFF4445	0.75	-0.4
4,440,334	+		GFF4445	0.77	+0.1
4,440,342	-		GFF4445	0.78	+0.9
4,440,342	-		GFF4445	0.78	-0.3
4,440,360	+		GFF4445	0.81	+0.5
4,440,360	+		GFF4445	0.81	+1.5
4,440,370	+		GFF4445	0.83	-1.0
4,440,370	+		GFF4445	0.83	-1.2
4,440,373	-		GFF4445	0.83	-0.9
4,440,378	-		GFF4445	0.84	+1.0
4,440,378	-		GFF4445	0.84	-0.7
4,440,378	-		GFF4445	0.84	+0.6
4,440,382	+		GFF4445	0.85	-0.3
4,440,382	+		GFF4445	0.85	-0.1
4,440,390	-		GFF4445	0.86	+0.9
4,440,404	+		GFF4445	0.89	+0.3
4,440,404	+		GFF4445	0.89	+0.3
4,440,404	+		GFF4445	0.89	+0.3
4,440,412	-				+0.5
4,440,443	+				-0.3
4,440,459	+				-0.2
4,440,465	-				+0.1
4,440,469	-				+0.5
4,440,483	+				-0.4
4,440,483	+				+0.8
4,440,508	-				+1.5
4,440,508	-				-0.5
4,440,530	+				+0.2
4,440,530	+				-0.3
4,440,530	+				+0.5
4,440,535	+				-2.6
4,440,538	-				-0.1
4,440,540	+				+0.7
4,440,543	-				+0.7
4,440,560	-				+0.3
4,440,562	+				-0.5
4,440,563	+				+0.6
4,440,597	-				-0.1
4,440,607	+				-0.1
4,440,607	+				+1.4
4,440,607	+				-0.5
4,440,654	+				-0.6
4,440,666	-				-0.9
4,440,666	-				+0.1
4,440,683	-				-1.4
4,440,760	+				-0.2
4,440,783	-				-2.3