Strain Fitness in Sphingobium sp. HT1-2 around GFF4414

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,410,421	-		GFF4412	0.30	+0.1
4,410,423	+		GFF4412	0.31	+0.5
4,410,423	+		GFF4412	0.31	+0.9
4,410,426	-		GFF4412	0.31	-0.1
4,410,429	-		GFF4412	0.32	-0.7
4,410,431	-		GFF4412	0.33	-1.0
4,410,431	-		GFF4412	0.33	+0.2
4,410,431	-		GFF4412	0.33	+0.6
4,410,431	-		GFF4412	0.33	-0.6
4,410,431	-		GFF4412	0.33	-0.2
4,410,442	+		GFF4412	0.35	+1.1
4,410,468	+		GFF4412	0.42	+0.5
4,410,488	+		GFF4412	0.47	-2.9
4,410,496	-		GFF4412	0.49	+0.8
4,410,501	-		GFF4412	0.50	+0.2
4,410,503	+		GFF4412	0.51	-2.6
4,410,506	+		GFF4412	0.52	-0.3
4,410,507	+		GFF4412	0.52	+1.2
4,410,507	+		GFF4412	0.52	+1.5
4,410,513	+		GFF4412	0.53	+0.1
4,410,513	+		GFF4412	0.53	+0.3
4,410,513	+		GFF4412	0.53	+0.5
4,410,513	+		GFF4412	0.53	-0.8
4,410,513	+		GFF4412	0.53	+0.2
4,410,513	+		GFF4412	0.53	+0.1
4,410,521	-		GFF4412	0.55	-0.2
4,410,521	-		GFF4412	0.55	-1.2
4,410,521	-		GFF4412	0.55	-0.8
4,410,521	-		GFF4412	0.55	+1.1
4,410,521	-		GFF4412	0.55	+0.7
4,410,521	-		GFF4412	0.55	+0.1
4,410,526	-		GFF4412	0.57	+0.3
4,410,528	-		GFF4412	0.57	+0.6
4,410,564	+		GFF4412	0.66	-1.3
4,410,572	-		GFF4412	0.68	-1.0
4,410,574	+		GFF4412	0.69	+0.2
4,410,574	+		GFF4412	0.69	-0.5
4,410,579	+		GFF4412	0.70	+0.7
4,410,582	-		GFF4412	0.71	-2.3
4,410,582	-		GFF4412	0.71	-2.3
4,410,584	+		GFF4412	0.71	+0.4
4,410,588	+		GFF4412	0.72	-0.1
4,410,607	-		GFF4412	0.77	-0.4
4,410,609	+		GFF4412	0.78	+0.5
4,410,612	-		GFF4412	0.78	+0.4
4,410,624	-		GFF4412	0.81	-1.3
4,410,646	-		GFF4412	0.87	+0.3
4,410,662	+				-0.3
4,410,690	-				-1.5
4,410,699	+				-1.6
4,410,714	-				+0.5
4,410,769	+				-1.1
4,410,769	+				-1.8
4,410,777	-				+0.4
4,410,777	-				+0.5
4,410,782	+				+0.3
4,410,787	-				-0.8
4,410,797	+				-0.2
4,410,797	+				+1.0
4,410,798	+				-1.6
4,410,805	-				+0.5
4,410,816	-				+0.4
4,410,817	-				-0.7
4,410,832	+				-0.0
4,410,832	+				-3.4
4,410,834	-				-0.1
4,410,840	-				-1.1
4,410,840	-				-0.3
4,410,853	+				-0.8
4,410,881	-				-0.3
4,410,885	+				-0.8
4,410,887	-				-1.3
4,410,893	-				-0.7
4,410,907	+				+1.2
4,410,907	+				-0.0
4,410,907	+				-0.4
4,410,907	+				-0.1
4,410,907	+				-1.4
4,410,907	+				-0.5
4,410,907	+				-1.8
4,410,907	+				+0.0
4,410,915	-				-2.6
4,410,915	-				-1.2
4,410,915	-				-0.1
4,410,915	-				+0.6
4,410,915	-				+0.4
4,410,915	-				+1.1
4,410,915	-				-1.4
4,410,915	-				+0.4
4,410,915	-				+0.6
4,410,936	-		GFF4413	0.13	-0.0
4,410,960	-		GFF4413	0.19	+1.0
4,410,963	+		GFF4413	0.20	-0.2
4,410,969	+		GFF4413	0.21	-0.2
4,410,969	+		GFF4413	0.21	+1.0
4,410,969	+		GFF4413	0.21	-1.2
4,410,977	-		GFF4413	0.23	+0.1
4,410,982	+		GFF4413	0.25	-0.6
4,410,982	-		GFF4413	0.25	+0.8
4,410,994	+		GFF4413	0.28	-0.2
4,411,002	+		GFF4413	0.30	-1.1
4,411,002	-		GFF4413	0.30	-0.1
4,411,015	-		GFF4413	0.33	-1.3
4,411,015	-		GFF4413	0.33	-0.1
4,411,036	+		GFF4413	0.39	+0.2
4,411,036	+		GFF4413	0.39	-1.8
4,411,036	+		GFF4413	0.39	+0.2
4,411,036	+		GFF4413	0.39	-1.5
4,411,038	+		GFF4413	0.39	-0.3
4,411,044	-		GFF4413	0.41	+0.6
4,411,074	-		GFF4413	0.49	+1.3
4,411,087	-		GFF4413	0.52	+0.7
4,411,089	-		GFF4413	0.53	+1.2
4,411,094	-		GFF4413	0.54	-1.6
4,411,094	-		GFF4413	0.54	+0.5
4,411,111	-		GFF4413	0.59	-0.3
4,411,111	-		GFF4413	0.59	-2.3
4,411,166	-		GFF4413	0.73	-0.9
4,411,172	-		GFF4413	0.75	+0.5
4,411,189	-		GFF4413	0.79	+0.5
4,411,190	-		GFF4413	0.79	+0.4
4,411,212	-		GFF4413	0.85	-0.3
4,411,212	-		GFF4413	0.85	-1.5
4,411,212	-		GFF4413	0.85	+0.8
4,411,249	+				+0.3
4,411,249	+				-1.0
4,411,253	+				+0.2
4,411,253	+				+0.3
4,411,253	+				+0.1
4,411,253	+				-0.9
4,411,253	+				-0.8
4,411,253	+				+0.1
4,411,257	-				-0.5
4,411,261	-				+0.4
4,411,261	-				+0.7
4,411,263	+				+1.5
4,411,263	+				-0.6
4,411,263	+				+0.7
4,411,263	+				-1.7
4,411,270	+				-0.9
4,411,270	+				-0.3
4,411,271	-				-1.1
4,411,271	-				-0.3
4,411,271	-				+0.5
4,411,278	-				-1.6
4,411,304	+				+0.3
4,411,338	-				-0.5
4,411,343	-				-1.5
4,411,366	+				+0.5
4,411,366	+				-0.5
4,411,366	+				+0.3
4,411,369	-				-1.0
4,411,374	-				-1.9
4,411,378	+				+0.1
4,411,378	+				+0.3
4,411,378	+				-0.6
4,411,394	+				-0.3
4,411,407	-				-0.6
4,411,426	+				-1.0
4,411,426	+				+1.0
4,411,448	+				-0.8
4,411,449	-				+0.3
4,411,470	-				+0.7
4,411,470	-				-0.9
4,411,473	+				+1.5
4,411,473	+				-0.7
4,411,473	+				-1.0
4,411,473	+				-0.9
4,411,478	+				-0.3
4,411,478	+				-0.7
4,411,478	+				+1.1
4,411,481	-				-0.3
4,411,481	-				+0.7
4,411,481	-				+0.4
4,411,481	-				-1.0
4,411,481	-				+0.8
4,411,492	-				-1.0
4,411,496	-				-0.3
4,411,505	+				+0.1
4,411,514	+				-0.1
4,411,527	+				+0.0
4,411,534	+		GFF4414	0.11	-2.1
4,411,534	+		GFF4414	0.11	-2.2
4,411,534	+		GFF4414	0.11	-1.2
4,411,534	+		GFF4414	0.11	+0.9
4,411,534	+		GFF4414	0.11	+0.0
4,411,538	-		GFF4414	0.11	-0.6
4,411,542	-		GFF4414	0.11	-1.9
4,411,546	+		GFF4414	0.12	-2.9
4,411,599	-		GFF4414	0.17	-0.6
4,411,631	-		GFF4414	0.20	+1.0
4,411,650	+		GFF4414	0.21	+1.5
4,411,669	-		GFF4414	0.23	+0.0
4,411,683	-		GFF4414	0.24	-0.6
4,411,712	-		GFF4414	0.27	-1.8
4,411,714	+		GFF4414	0.27	+0.7
4,411,747	+		GFF4414	0.30	+0.0
4,411,755	-		GFF4414	0.31	+0.3
4,411,756	+		GFF4414	0.31	-0.2
4,411,761	+		GFF4414	0.32	+0.5
4,411,763	+		GFF4414	0.32	+1.4
4,411,763	-		GFF4414	0.32	+0.0
4,411,769	-		GFF4414	0.32	+0.1
4,411,785	-		GFF4414	0.34	-1.5
4,411,799	+		GFF4414	0.35	-0.1
4,411,800	+		GFF4414	0.35	-1.5
4,411,822	-		GFF4414	0.37	-0.5
4,411,824	+		GFF4414	0.38	+0.5
4,411,855	+		GFF4414	0.40	-0.2
4,411,855	+		GFF4414	0.40	-0.4
4,411,862	-		GFF4414	0.41	-1.1
4,411,862	-		GFF4414	0.41	+0.8
4,411,868	+		GFF4414	0.42	+0.3
4,411,868	+		GFF4414	0.42	+0.4
4,411,876	-		GFF4414	0.42	+0.0
4,411,876	-		GFF4414	0.42	-1.1
4,411,876	-		GFF4414	0.42	-0.0
4,411,890	-		GFF4414	0.44	-2.0
4,411,890	-		GFF4414	0.44	-0.5
4,411,890	-		GFF4414	0.44	-1.3
4,411,909	-		GFF4414	0.45	+0.4
4,411,914	-		GFF4414	0.46	-2.1
4,411,928	+		GFF4414	0.47	-0.9
4,411,928	+		GFF4414	0.47	-1.6
4,411,928	+		GFF4414	0.47	-0.1
4,411,936	-		GFF4414	0.48	-1.7
4,411,941	-		GFF4414	0.48	+0.7
4,411,946	+		GFF4414	0.49	+0.5
4,411,949	-		GFF4414	0.49	-0.7
4,411,950	+		GFF4414	0.49	-1.4
4,411,958	-		GFF4414	0.50	+0.5
4,411,967	+		GFF4414	0.51	-0.8
4,411,979	-		GFF4414	0.52	-2.0
4,411,982	+		GFF4414	0.52	+0.1
4,411,985	-		GFF4414	0.52	+1.1
4,412,017	+		GFF4414	0.55	-1.3
4,412,017	+		GFF4414	0.55	-1.0
4,412,017	+		GFF4414	0.55	-1.4
4,412,017	+		GFF4414	0.55	+0.4
4,412,017	+		GFF4414	0.55	+0.9
4,412,017	+		GFF4414	0.55	+0.1
4,412,017	+		GFF4414	0.55	-1.6
4,412,017	+		GFF4414	0.55	+0.4
4,412,017	+		GFF4414	0.55	-0.5
4,412,017	+		GFF4414	0.55	-0.8
4,412,017	+		GFF4414	0.55	-0.4
4,412,017	+		GFF4414	0.55	-0.2
4,412,017	+		GFF4414	0.55	-0.1
4,412,017	+		GFF4414	0.55	-1.0
4,412,017	+		GFF4414	0.55	+0.8
4,412,017	+		GFF4414	0.55	-0.1
4,412,017	+		GFF4414	0.55	-1.2
4,412,017	+		GFF4414	0.55	-0.5
4,412,017	+		GFF4414	0.55	-1.1
4,412,017	+		GFF4414	0.55	-0.2
4,412,025	-		GFF4414	0.56	-0.2
4,412,025	-		GFF4414	0.56	-2.2
4,412,025	-		GFF4414	0.56	-0.9
4,412,025	-		GFF4414	0.56	-0.7
4,412,025	-		GFF4414	0.56	-1.0
4,412,025	-		GFF4414	0.56	+0.1
4,412,025	-		GFF4414	0.56	+0.3
4,412,025	-		GFF4414	0.56	-1.7
4,412,025	-		GFF4414	0.56	+0.7
4,412,025	-		GFF4414	0.56	+0.0
4,412,025	-		GFF4414	0.56	-2.2
4,412,025	-		GFF4414	0.56	+0.7
4,412,025	-		GFF4414	0.56	+0.8
4,412,025	-		GFF4414	0.56	+0.3
4,412,025	-		GFF4414	0.56	-0.5
4,412,025	-		GFF4414	0.56	+0.2
4,412,026	-		GFF4414	0.56	-1.0
4,412,036	-		GFF4414	0.57	-2.0
4,412,039	+		GFF4414	0.57	-2.5
4,412,047	-		GFF4414	0.58	+0.6
4,412,068	+		GFF4414	0.60	-1.6
4,412,068	+		GFF4414	0.60	+0.5
4,412,068	+		GFF4414	0.60	-0.5
4,412,076	-		GFF4414	0.61	+0.4
4,412,076	-		GFF4414	0.61	+0.6
4,412,076	-		GFF4414	0.61	-3.0
4,412,076	-		GFF4414	0.61	-1.1
4,412,076	-		GFF4414	0.61	+1.0
4,412,076	-		GFF4414	0.61	+0.4
4,412,076	-		GFF4414	0.61	-1.6
4,412,080	+		GFF4414	0.61	-0.5
4,412,084	-		GFF4414	0.62	-0.7
4,412,091	-		GFF4414	0.62	-2.9
4,412,092	+		GFF4414	0.62	+0.2
4,412,095	+		GFF4414	0.63	+0.6
4,412,095	+		GFF4414	0.63	-0.0
4,412,095	+		GFF4414	0.63	+0.8
4,412,095	+		GFF4414	0.63	-1.1
4,412,103	-		GFF4414	0.63	-0.2
4,412,104	-		GFF4414	0.64	-0.4
4,412,107	+		GFF4414	0.64	-0.3
4,412,107	+		GFF4414	0.64	-2.3
4,412,107	+		GFF4414	0.64	-0.9
4,412,107	+		GFF4414	0.64	+1.8
4,412,110	-		GFF4414	0.64	-0.5
4,412,115	-		GFF4414	0.65	-0.3
4,412,115	-		GFF4414	0.65	-1.6
4,412,139	-		GFF4414	0.67	+0.3
4,412,186	+		GFF4414	0.71	+0.2
4,412,191	+		GFF4414	0.72	-0.2
4,412,191	+		GFF4414	0.72	-0.5
4,412,191	+		GFF4414	0.72	-0.7
4,412,194	-		GFF4414	0.72	-0.4
4,412,199	-		GFF4414	0.72	-0.1
4,412,199	-		GFF4414	0.72	-1.5
4,412,206	+		GFF4414	0.73	+0.7
4,412,213	+		GFF4414	0.74	-0.5
4,412,214	-		GFF4414	0.74	+0.6
4,412,216	+		GFF4414	0.74	-0.4
4,412,216	+		GFF4414	0.74	+0.4
4,412,216	+		GFF4414	0.74	-1.1
4,412,224	-		GFF4414	0.75	-0.8
4,412,224	-		GFF4414	0.75	+0.5
4,412,224	-		GFF4414	0.75	-0.2
4,412,224	-		GFF4414	0.75	-0.6
4,412,224	-		GFF4414	0.75	+0.0
4,412,224	-		GFF4414	0.75	+0.0
4,412,225	+		GFF4414	0.75	+1.1
4,412,233	-		GFF4414	0.75	-0.9
4,412,235	+		GFF4414	0.76	-1.7
4,412,235	+		GFF4414	0.76	-0.8
4,412,235	+		GFF4414	0.76	+0.7
4,412,235	+		GFF4414	0.76	-1.0
4,412,235	+		GFF4414	0.76	-0.7
4,412,243	-		GFF4414	0.76	+0.7
4,412,243	-		GFF4414	0.76	+0.2
4,412,243	-		GFF4414	0.76	-0.9
4,412,249	+		GFF4414	0.77	-0.8
4,412,249	+		GFF4414	0.77	-2.2
4,412,254	+		GFF4414	0.77	-0.5
4,412,254	+		GFF4414	0.77	-2.4
4,412,254	+		GFF4414	0.77	-1.7
4,412,254	+		GFF4414	0.77	-0.9
4,412,254	+		GFF4414	0.77	+0.5
4,412,254	+		GFF4414	0.77	+0.3
4,412,262	-		GFF4414	0.78	+0.3
4,412,262	-		GFF4414	0.78	-0.7
4,412,262	-		GFF4414	0.78	-1.4
4,412,262	-		GFF4414	0.78	-1.0
4,412,277	-		GFF4414	0.80	+0.7
4,412,301	+		GFF4414	0.82	+1.0
4,412,301	+		GFF4414	0.82	-0.4
4,412,301	+		GFF4414	0.82	-1.2
4,412,301	+		GFF4414	0.82	+1.1
4,412,301	+		GFF4414	0.82	+0.8
4,412,301	+		GFF4414	0.82	+0.4
4,412,304	-		GFF4414	0.82	-0.3
4,412,309	-		GFF4414	0.83	-1.0
4,412,309	-		GFF4414	0.83	+0.3
4,412,309	-		GFF4414	0.83	-0.9
4,412,309	-		GFF4414	0.83	-0.2
4,412,309	-		GFF4414	0.83	-0.7
4,412,309	-		GFF4414	0.83	-0.7
4,412,309	-		GFF4414	0.83	+0.0
4,412,317	+		GFF4414	0.83	+0.2
4,412,324	+		GFF4414	0.84	+0.5
4,412,324	+		GFF4414	0.84	+0.0
4,412,324	+		GFF4414	0.84	-0.8
4,412,332	-		GFF4414	0.85	-0.5
4,412,332	-		GFF4414	0.85	+0.8
4,412,336	+		GFF4414	0.85	-0.5
4,412,338	-		GFF4414	0.85	-1.2
4,412,344	-		GFF4414	0.86	+0.1
4,412,344	-		GFF4414	0.86	-1.1
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