Strain Fitness in Sphingobium sp. HT1-2 around GFF4376

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,378,049	+		GFF4374	0.54	-0.8
4,378,049	-		GFF4374	0.54	+0.8
4,378,049	-		GFF4374	0.54	-1.0
4,378,049	-		GFF4374	0.54	+0.6
4,378,049	-		GFF4374	0.54	-1.5
4,378,049	-		GFF4374	0.54	-1.0
4,378,051	+		GFF4374	0.55	+1.5
4,378,051	+		GFF4374	0.55	-0.0
4,378,051	+		GFF4374	0.55	-2.5
4,378,051	+		GFF4374	0.55	-0.4
4,378,051	+		GFF4374	0.55	-0.5
4,378,057	-		GFF4374	0.55	+0.0
4,378,057	-		GFF4374	0.55	+0.4
4,378,057	-		GFF4374	0.55	-0.7
4,378,057	-		GFF4374	0.55	-0.7
4,378,057	-		GFF4374	0.55	-0.8
4,378,059	-		GFF4374	0.55	-1.1
4,378,059	-		GFF4374	0.55	-1.3
4,378,061	+		GFF4374	0.56	-0.1
4,378,074	-		GFF4374	0.57	-0.0
4,378,080	-		GFF4374	0.58	-0.7
4,378,080	-		GFF4374	0.58	-0.2
4,378,080	-		GFF4374	0.58	-0.5
4,378,080	-		GFF4374	0.58	-0.5
4,378,080	-		GFF4374	0.58	-0.0
4,378,084	-		GFF4374	0.58	+0.2
4,378,094	+		GFF4374	0.59	-0.7
4,378,094	+		GFF4374	0.59	+1.2
4,378,102	-		GFF4374	0.60	+0.7
4,378,102	-		GFF4374	0.60	-0.4
4,378,105	-		GFF4374	0.60	+0.5
4,378,105	-		GFF4374	0.60	-0.7
4,378,175	+		GFF4374	0.68	+0.1
4,378,175	+		GFF4374	0.68	-0.6
4,378,183	-		GFF4374	0.69	-0.6
4,378,194	-		GFF4374	0.70	-1.2
4,378,216	+		GFF4374	0.72	-2.0
4,378,224	-		GFF4374	0.73	-0.8
4,378,231	+		GFF4374	0.74	+0.6
4,378,239	-		GFF4374	0.75	+0.8
4,378,239	-		GFF4374	0.75	-0.4
4,378,270	+		GFF4374	0.78	+0.1
4,378,270	+		GFF4374	0.78	-1.2
4,378,270	+		GFF4374	0.78	-0.8
4,378,275	+		GFF4374	0.78	+0.7
4,378,278	-		GFF4374	0.79	-0.9
4,378,278	-		GFF4374	0.79	-0.6
4,378,278	-		GFF4374	0.79	-0.2
4,378,278	-		GFF4374	0.79	-0.3
4,378,278	-		GFF4374	0.79	+0.1
4,378,283	-		GFF4374	0.79	+0.1
4,378,294	-		GFF4374	0.81	-1.3
4,378,305	+		GFF4374	0.82	-0.5
4,378,313	-		GFF4374	0.83	-1.3
4,378,314	-		GFF4374	0.83	+2.0
4,378,330	+		GFF4374	0.84	+1.1
4,378,338	-		GFF4374	0.85	+1.0
4,378,352	-		GFF4374	0.87	-0.2
4,378,358	-		GFF4374	0.87	+1.2
4,378,374	+		GFF4374	0.89	-1.3
4,378,374	+		GFF4374	0.89	-1.0
4,378,374	+		GFF4374	0.89	-0.6
4,378,382	-		GFF4374	0.90	+0.2
4,378,382	-		GFF4374	0.90	-1.6
4,378,382	-		GFF4374	0.90	-2.0
4,378,382	-		GFF4374	0.90	-1.0
4,378,382	-		GFF4374	0.90	-1.0
4,378,393	+				-2.0
4,378,401	+				+1.2
4,378,401	+				-2.5
4,378,408	+				-0.4
4,378,409	-				-1.9
4,378,410	-				+0.2
4,378,412	+				-2.0
4,378,412	+				-0.7
4,378,412	+				-2.6
4,378,412	+				+0.2
4,378,420	-				+0.3
4,378,420	-				-0.1
4,378,420	-				-2.5
4,378,426	-				-1.5
4,378,432	+				+1.0
4,378,432	+				-0.7
4,378,432	+				-0.7
4,378,432	+				-0.1
4,378,436	+				+0.6
4,378,441	+				-0.8
4,378,446	+				+1.1
4,378,446	+				+1.4
4,378,446	+				-0.9
4,378,446	+				-0.1
4,378,446	+				-0.9
4,378,446	+				-0.2
4,378,446	+				-1.8
4,378,446	+				+0.1
4,378,446	+				-0.4
4,378,449	-				-0.8
4,378,449	-				+0.3
4,378,449	-				-0.9
4,378,454	-				-0.2
4,378,454	-				-0.4
4,378,454	-				-1.8
4,378,454	-				-0.1
4,378,454	-				-0.1
4,378,454	-				-0.6
4,378,454	-				+1.1
4,378,454	-				+0.1
4,378,456	+				-0.7
4,378,456	+				-0.8
4,378,456	+				-1.9
4,378,456	+				-0.4
4,378,456	+				-0.3
4,378,456	+				-0.3
4,378,463	+				-0.6
4,378,463	+				-0.5
4,378,464	-				-1.8
4,378,464	-				+0.1
4,378,464	-				+0.5
4,378,471	-				-1.6
4,378,471	-				-1.5
4,378,471	-				+0.5
4,378,471	-				-1.4
4,378,474	+				+0.6
4,378,475	+				-1.0
4,378,483	-				-0.9
4,378,483	-				-1.5
4,378,496	+				-0.1
4,378,497	+				-0.2
4,378,502	-				+0.7
4,378,506	+				-1.0
4,378,521	-				-0.6
4,378,523	+				+0.9
4,378,546	+		GFF4375	0.11	-1.1
4,378,546	+		GFF4375	0.11	+0.3
4,378,546	+		GFF4375	0.11	-2.8
4,378,546	+		GFF4375	0.11	+1.0
4,378,546	+		GFF4375	0.11	-1.8
4,378,554	-		GFF4375	0.13	-0.6
4,378,554	-		GFF4375	0.13	+0.1
4,378,554	-		GFF4375	0.13	+0.5
4,378,556	-		GFF4375	0.13	-0.6
4,378,556	-		GFF4375	0.13	-0.3
4,378,563	+		GFF4375	0.15	-2.8
4,378,578	+		GFF4375	0.18	-1.3
4,378,578	+		GFF4375	0.18	+0.2
4,378,578	+		GFF4375	0.18	+1.3
4,378,588	-		GFF4375	0.20	-0.3
4,378,593	-		GFF4375	0.21	-0.8
4,378,594	+		GFF4375	0.21	-0.5
4,378,597	-		GFF4375	0.21	-0.5
4,378,602	-		GFF4375	0.22	+1.7
4,378,624	-		GFF4375	0.27	+1.5
4,378,624	-		GFF4375	0.27	-0.6
4,378,636	+		GFF4375	0.29	-0.6
4,378,639	-		GFF4375	0.30	-0.5
4,378,680	+		GFF4375	0.38	+1.3
4,378,693	-		GFF4375	0.41	+0.1
4,378,693	-		GFF4375	0.41	-0.2
4,378,712	+		GFF4375	0.45	-0.3
4,378,714	+		GFF4375	0.45	-0.3
4,378,722	-		GFF4375	0.47	-0.7
4,378,739	-		GFF4375	0.51	+0.9
4,378,747	+		GFF4375	0.52	-0.7
4,378,747	+		GFF4375	0.52	-1.1
4,378,749	+		GFF4375	0.53	+0.2
4,378,755	-		GFF4375	0.54	-0.7
4,378,769	+		GFF4375	0.57	+0.1
4,378,824	+		GFF4375	0.68	-1.6
4,378,825	+		GFF4375	0.68	-1.2
4,378,825	+		GFF4375	0.68	+0.4
4,378,825	+		GFF4375	0.68	-1.4
4,378,825	+		GFF4375	0.68	-0.9
4,378,832	+		GFF4375	0.70	-0.5
4,378,832	+		GFF4375	0.70	-0.0
4,378,832	+		GFF4375	0.70	+0.5
4,378,832	+		GFF4375	0.70	-0.1
4,378,833	-		GFF4375	0.70	-1.8
4,378,833	-		GFF4375	0.70	+0.6
4,378,833	-		GFF4375	0.70	-0.3
4,378,833	-		GFF4375	0.70	-1.6
4,378,833	-		GFF4375	0.70	+0.0
4,378,833	-		GFF4375	0.70	-0.5
4,378,833	-		GFF4375	0.70	+1.0
4,378,833	-		GFF4375	0.70	+0.1
4,378,840	+		GFF4375	0.71	-0.5
4,378,840	-		GFF4375	0.71	+0.3
4,378,846	-		GFF4375	0.72	-1.5
4,378,848	-		GFF4375	0.73	+0.2
4,378,848	-		GFF4375	0.73	-0.2
4,378,872	-		GFF4375	0.78	+1.0
4,378,889	+		GFF4375	0.81	-0.9
4,378,889	+		GFF4375	0.81	+0.6
4,378,933	+				-0.5
4,378,950	+				-0.8
4,378,950	+				-0.4
4,378,983	+				-1.8
4,378,983	+				-0.8
4,378,983	+				-0.2
4,378,984	-				+0.5
4,378,991	-				+1.4
4,378,997	+				-1.6
4,379,005	-				-1.0
4,379,025	-				-1.8
4,379,034	+				-0.1
4,379,034	+				-1.3
4,379,042	-				-0.6
4,379,046	+				-1.8
4,379,051	+				+0.1
4,379,051	+				+0.5
4,379,051	+				-1.3
4,379,051	+				+0.2
4,379,052	-				-0.5
4,379,058	-				+0.5
4,379,059	-				-1.5
4,379,059	-				+0.8
4,379,059	-				+0.8
4,379,059	-				-0.5
4,379,089	+				+0.1
4,379,089	+				-0.9
4,379,091	-				+0.8
4,379,093	-				+0.8
4,379,093	-				-0.2
4,379,093	-				+0.1
4,379,095	-				-0.4
4,379,097	-				-2.4
4,379,098	-				-1.3
4,379,119	+		GFF4376	0.11	-2.0
4,379,121	-		GFF4376	0.11	+1.8
4,379,147	+		GFF4376	0.15	-0.4
4,379,179	-		GFF4376	0.20	-1.2
4,379,179	-		GFF4376	0.20	+1.5
4,379,197	+		GFF4376	0.23	+0.5
4,379,205	-		GFF4376	0.24	-0.7
4,379,238	+		GFF4376	0.29	-0.4
4,379,244	-		GFF4376	0.30	-1.3
4,379,263	-		GFF4376	0.33	+0.1
4,379,293	+		GFF4376	0.38	-0.8
4,379,299	-		GFF4376	0.39	-0.9
4,379,303	+		GFF4376	0.39	-0.8
4,379,308	+		GFF4376	0.40	-0.1
4,379,311	-		GFF4376	0.41	+0.2
4,379,311	-		GFF4376	0.41	-0.6
4,379,336	-		GFF4376	0.44	-1.3
4,379,343	-		GFF4376	0.46	-0.6
4,379,348	-		GFF4376	0.46	-2.2
4,379,354	+		GFF4376	0.47	+0.8
4,379,354	+		GFF4376	0.47	-0.8
4,379,369	+		GFF4376	0.50	-0.8
4,379,370	+		GFF4376	0.50	-0.9
4,379,384	-		GFF4376	0.52	+0.5
4,379,384	-		GFF4376	0.52	-0.5
4,379,404	+		GFF4376	0.55	+1.6
4,379,414	-		GFF4376	0.57	-0.7
4,379,414	-		GFF4376	0.57	-1.3
4,379,422	+		GFF4376	0.58	-0.7
4,379,422	+		GFF4376	0.58	-0.7
4,379,430	+		GFF4376	0.59	-0.0
4,379,438	+		GFF4376	0.60	-0.2
4,379,441	+		GFF4376	0.61	-0.2
4,379,449	+		GFF4376	0.62	-0.4
4,379,449	-		GFF4376	0.62	+0.5
4,379,449	-		GFF4376	0.62	+0.1
4,379,486	+		GFF4376	0.68	-2.6
4,379,486	+		GFF4376	0.68	+0.7
4,379,486	+		GFF4376	0.68	-0.4
4,379,486	+		GFF4376	0.68	-1.7
4,379,486	+		GFF4376	0.68	+0.3
4,379,486	+		GFF4376	0.68	-1.4
4,379,487	+		GFF4376	0.68	+0.4
4,379,499	-		GFF4376	0.70	+0.2
4,379,506	-		GFF4376	0.71	-0.9
4,379,515	-		GFF4376	0.72	-0.2
4,379,517	+		GFF4376	0.73	-0.9
4,379,525	-		GFF4376	0.74	-0.2
4,379,525	-		GFF4376	0.74	-0.7
4,379,525	-		GFF4376	0.74	-3.8
4,379,554	+		GFF4376	0.78	+0.4
4,379,564	-		GFF4376	0.80	-0.5
4,379,592	-		GFF4376	0.84	+0.3
4,379,606	+		GFF4376	0.86	-0.5
4,379,606	+		GFF4376	0.86	-1.8
4,379,611	-		GFF4376	0.87	-1.3
4,379,613	+		GFF4376	0.87	+0.2
4,379,614	-		GFF4376	0.88	+0.3
4,379,614	-		GFF4376	0.88	-0.4
4,379,658	+				-1.7
4,379,665	+				+0.4
4,379,668	-				-1.2
4,379,668	-				-1.6
4,379,668	-				-0.6
4,379,668	-				+0.8
4,379,670	+				-0.0
4,379,670	+				-0.9
4,379,670	+				+1.5
4,379,670	+				-0.4
4,379,673	-				+1.1
4,379,673	-				-0.5
4,379,678	-				+1.0
4,379,678	-				-0.3
4,379,678	-				-0.9
4,379,678	-				-0.2
4,379,682	+				+0.1
4,379,687	+				-0.6
4,379,693	+				+0.1
4,379,695	-				-1.0
4,379,725	+				+0.3
4,379,727	-				-0.8
4,379,735	+				-0.2
4,379,738	-				+1.9
4,379,748	-				-0.1
4,379,768	+				-1.1
4,379,775	+				-1.1
4,379,775	+				-1.6
4,379,776	+				-1.5
4,379,781	+				-0.8
4,379,781	+				-1.5
4,379,781	+				-1.4
4,379,781	+				+0.2
4,379,786	+				+0.3
4,379,789	-				-0.1
4,379,789	-				-0.0
4,379,789	-				-0.7
4,379,794	-		GFF4377	0.11	-1.6
4,379,799	+		GFF4377	0.12	-0.6
4,379,799	+		GFF4377	0.12	+0.7
4,379,800	-		GFF4377	0.12	-2.0
4,379,803	+		GFF4377	0.12	-0.1
4,379,804	+		GFF4377	0.12	+1.2
4,379,804	+		GFF4377	0.12	-0.3
4,379,805	-		GFF4377	0.13	-0.0
4,379,807	-		GFF4377	0.13	-1.1
4,379,812	-		GFF4377	0.14	+0.1
4,379,832	+		GFF4377	0.17	+0.8
4,379,833	+		GFF4377	0.17	-0.9
4,379,833	+		GFF4377	0.17	-0.3
4,379,834	+		GFF4377	0.17	+0.4
4,379,840	-		GFF4377	0.18	-0.5
4,379,842	-		GFF4377	0.19	+1.6
4,379,854	+		GFF4377	0.20	-0.1
4,379,858	+		GFF4377	0.21	-1.0
4,379,862	-		GFF4377	0.22	-0.8
4,379,866	-		GFF4377	0.22	+0.5
4,379,866	-		GFF4377	0.22	-1.9
4,379,877	+		GFF4377	0.24	+0.7
4,379,877	+		GFF4377	0.24	-0.2
4,379,885	-		GFF4377	0.26	-0.5
4,379,885	-		GFF4377	0.26	-2.2
4,379,886	-		GFF4377	0.26	+0.4
4,379,888	+		GFF4377	0.26	-0.0
4,379,898	+		GFF4377	0.28	-0.2
4,379,898	+		GFF4377	0.28	+0.3
4,379,898	+		GFF4377	0.28	+0.6
4,379,898	+		GFF4377	0.28	-1.0
4,379,898	+		GFF4377	0.28	-0.6
4,379,898	-		GFF4377	0.28	-0.6
4,379,906	-		GFF4377	0.29	-0.2
4,379,950	+		GFF4377	0.36	-1.6
4,379,959	-		GFF4377	0.38	+0.4
4,379,970	+		GFF4377	0.39	+0.5
4,379,970	+		GFF4377	0.39	+0.6
4,379,972	-		GFF4377	0.40	+0.3
4,379,972	-		GFF4377	0.40	+0.8
4,379,978	-		GFF4377	0.41	-1.0
4,379,978	-		GFF4377	0.41	+0.8
4,379,978	-		GFF4377	0.41	+0.9
4,379,978	-		GFF4377	0.41	-0.6
4,379,978	-		GFF4377	0.41	-1.5
4,379,978	-		GFF4377	0.41	+0.5
4,379,980	+		GFF4377	0.41	+0.3
4,379,980	+		GFF4377	0.41	-0.0
4,379,980	+		GFF4377	0.41	-1.5
4,379,987	+		GFF4377	0.42	+0.9
4,379,988	-		GFF4377	0.42	-0.4
4,379,988	-		GFF4377	0.42	-1.8
4,379,988	-		GFF4377	0.42	+0.2
4,379,994	+		GFF4377	0.43	-1.8
4,380,002	-		GFF4377	0.45	-1.5
4,380,007	+		GFF4377	0.45	-0.5
4,380,027	+		GFF4377	0.49	-1.9
4,380,032	+		GFF4377	0.49	+0.9
4,380,040	-		GFF4377	0.51	-0.5
4,380,040	-		GFF4377	0.51	-0.9
4,380,052	+		GFF4377	0.53	+0.1
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4,380,282	+				-1.5
4,380,288	+				+0.3
4,380,288	-				-2.5
4,380,288	-				-0.6
4,380,291	+				-0.6
4,380,291	+				+0.2
4,380,291	+				+0.5
4,380,291	+				+0.1
4,380,299	+				-0.7
4,380,299	-				-1.9
4,380,299	-				-0.6
4,380,299	-				+0.4
4,380,299	-				+0.9
4,380,307	+				-0.6
4,380,314	+				+0.3
4,380,315	-				-0.1
4,380,315	-				+0.1
4,380,321	+				-2.5
4,380,331	+				+0.1
4,380,331	+				-0.6
4,380,339	-				-2.0
4,380,339	-				-0.3
4,380,339	-				-2.3
4,380,339	-				-1.2
4,380,339	-				+0.8
4,380,344	-				+0.1
4,380,352	+				+1.3
4,380,368	-				-0.2
4,380,369	+				-0.5
4,380,370	+				+0.1
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4,380,387	+				+0.3
4,380,388	+				-0.4
4,380,388	+				+1.1
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4,380,564	+				+1.6
4,380,575	+				+0.2
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4,380,583	-				-0.2
4,380,585	-				+1.1
4,380,608	+				-1.1
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