Strain Fitness in Sphingobium sp. HT1-2 around GFF4367

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,365,492	-		GFF4366	0.56	+0.8
4,365,506	+		GFF4366	0.58	-2.2
4,365,513	-		GFF4366	0.59	-1.1
4,365,539	+		GFF4366	0.61	+0.6
4,365,542	-		GFF4366	0.62	-0.5
4,365,553	-		GFF4366	0.63	+0.9
4,365,567	+		GFF4366	0.64	-0.3
4,365,567	+		GFF4366	0.64	+0.5
4,365,574	-		GFF4366	0.65	+0.1
4,365,581	+		GFF4366	0.66	-0.1
4,365,581	+		GFF4366	0.66	-0.3
4,365,581	+		GFF4366	0.66	-2.2
4,365,581	+		GFF4366	0.66	+1.0
4,365,581	+		GFF4366	0.66	-0.1
4,365,581	+		GFF4366	0.66	+0.0
4,365,581	+		GFF4366	0.66	-0.6
4,365,589	-		GFF4366	0.67	-0.1
4,365,589	-		GFF4366	0.67	-0.8
4,365,591	+		GFF4366	0.67	+0.0
4,365,610	+		GFF4366	0.69	-0.9
4,365,632	+		GFF4366	0.72	-0.5
4,365,664	+		GFF4366	0.75	+1.0
4,365,664	+		GFF4366	0.75	+0.1
4,365,672	-		GFF4366	0.76	-0.2
4,365,731	+		GFF4366	0.82	+0.0
4,365,731	+		GFF4366	0.82	-0.6
4,365,731	+		GFF4366	0.82	+0.9
4,365,737	-		GFF4366	0.83	+1.1
4,365,739	-		GFF4366	0.83	-1.5
4,365,739	-		GFF4366	0.83	+0.2
4,365,739	-		GFF4366	0.83	-0.0
4,365,739	-		GFF4366	0.83	-0.0
4,365,739	-		GFF4366	0.83	-2.2
4,365,739	-		GFF4366	0.83	+0.7
4,365,739	-		GFF4366	0.83	-0.6
4,365,739	-		GFF4366	0.83	+0.2
4,365,739	-		GFF4366	0.83	+0.5
4,365,750	+		GFF4366	0.84	-0.1
4,365,764	-		GFF4366	0.86	+1.2
4,365,779	-		GFF4366	0.88	-0.1
4,365,779	-		GFF4366	0.88	-0.0
4,365,804	+				+1.6
4,365,804	+				+0.2
4,365,804	+				+0.8
4,365,804	+				-1.0
4,365,812	-				-0.8
4,365,850	+				-1.4
4,365,850	+				-2.3
4,365,850	+				-2.4
4,365,850	+				+1.0
4,365,850	+				-0.5
4,365,858	-				-0.1
4,365,858	-				+0.4
4,365,858	-				-0.8
4,365,859	-				+0.2
4,365,861	+				+0.5
4,365,879	+				-0.3
4,365,887	+				-0.0
4,365,887	+				+1.0
4,365,887	+				+1.0
4,365,894	+				-1.0
4,365,894	+				-0.5
4,365,894	+				+0.2
4,365,894	+				-0.5
4,365,894	+				+0.2
4,365,894	+				-0.2
4,365,895	-				+0.7
4,365,895	-				-0.7
4,365,895	-				+0.1
4,365,945	-				-1.5
4,365,954	+				-0.7
4,365,955	+				+0.3
4,365,963	-				-2.4
4,365,963	-				-1.4
4,365,968	-				-0.6
4,365,973	-				-1.8
4,365,983	-				+1.1
4,365,989	+				-1.0
4,365,994	+				+0.6
4,365,994	+				+0.9
4,365,997	-				-0.2
4,365,997	-				+0.3
4,365,999	+				+0.9
4,366,000	-				+0.5
4,366,000	-				+0.3
4,366,002	-				+1.0
4,366,002	-				-0.3
4,366,002	-				-1.7
4,366,004	+				-0.0
4,366,012	-				-0.4
4,366,014	+				-0.5
4,366,022	-				-0.0
4,366,026	-				+0.7
4,366,043	-				+0.5
4,366,058	+				-0.1
4,366,059	+				-0.1
4,366,067	-				-1.1
4,366,087	-				+0.1
4,366,092	+				-2.2
4,366,092	+				+0.1
4,366,092	+				+0.8
4,366,092	+				-0.2
4,366,092	+				+1.3
4,366,092	+				-2.3
4,366,092	+				+0.5
4,366,092	+				-0.6
4,366,092	+				+0.1
4,366,092	+				-0.5
4,366,092	+				+1.3
4,366,092	+				-1.4
4,366,092	+				+1.0
4,366,092	+				+0.2
4,366,092	+				-0.2
4,366,092	+				-0.3
4,366,094	+				+0.6
4,366,094	+				+0.9
4,366,100	-				+0.5
4,366,100	-				-0.4
4,366,100	-				+0.7
4,366,100	-				-0.1
4,366,100	-				-0.5
4,366,100	-				-0.7
4,366,100	-				-1.9
4,366,100	-				-1.6
4,366,100	-				-0.2
4,366,100	-				-0.3
4,366,100	-				+0.3
4,366,100	-				+0.1
4,366,102	-				+0.5
4,366,112	-				-0.0
4,366,112	-				-1.5
4,366,112	-				-0.5
4,366,119	-				+1.2
4,366,123	-				-0.2
4,366,180	+				+0.1
4,366,188	-				-1.4
4,366,250	-				-0.1
4,366,257	-				+0.1
4,366,265	+				-0.6
4,366,276	+				-1.6
4,366,311	-				+0.1
4,366,351	+				-0.2
4,366,366	-				+0.1
4,366,366	-				-0.5
4,366,449	+				-2.3
4,366,473	+				+0.7
4,366,477	-				+0.8
4,366,480	+				+0.1
4,366,481	-				-1.6
4,366,496	-				-0.4
4,366,513	+				+0.3
4,366,523	+				+1.4
4,366,523	+				-0.4
4,366,525	+				-1.9
4,366,531	-				-0.1
4,366,531	-				+0.9
4,366,533	-				-2.9
4,366,559	-		GFF4367	0.12	-2.0
4,366,561	+		GFF4367	0.12	-1.5
4,366,564	-		GFF4367	0.13	-0.5
4,366,566	+		GFF4367	0.13	-0.4
4,366,566	+		GFF4367	0.13	-0.0
4,366,566	+		GFF4367	0.13	-0.3
4,366,569	-		GFF4367	0.14	+0.4
4,366,573	+		GFF4367	0.14	+0.3
4,366,574	-		GFF4367	0.14	-0.4
4,366,574	-		GFF4367	0.14	-1.3
4,366,574	-		GFF4367	0.14	-0.0
4,366,581	+		GFF4367	0.15	-0.6
4,366,581	+		GFF4367	0.15	-0.2
4,366,581	+		GFF4367	0.15	-0.9
4,366,581	+		GFF4367	0.15	-2.3
4,366,581	+		GFF4367	0.15	-3.2
4,366,581	+		GFF4367	0.15	-1.2
4,366,581	+		GFF4367	0.15	-0.4
4,366,581	+		GFF4367	0.15	+1.0
4,366,589	-		GFF4367	0.17	+0.3
4,366,589	-		GFF4367	0.17	-1.6
4,366,589	-		GFF4367	0.17	+1.1
4,366,589	-		GFF4367	0.17	-0.8
4,366,589	-		GFF4367	0.17	-0.0
4,366,606	+		GFF4367	0.19	-0.1
4,366,612	+		GFF4367	0.20	-2.1
4,366,614	-		GFF4367	0.20	+0.2
4,366,614	-		GFF4367	0.20	+0.4
4,366,620	-		GFF4367	0.21	+1.3
4,366,630	+		GFF4367	0.23	-1.7
4,366,661	-		GFF4367	0.27	-2.5
4,366,682	+		GFF4367	0.31	-1.7
4,366,740	+		GFF4367	0.39	+0.1
4,366,755	+		GFF4367	0.42	-0.5
4,366,755	-		GFF4367	0.42	-1.6
4,366,757	+		GFF4367	0.42	-0.9
4,366,760	-		GFF4367	0.42	-1.9
4,366,802	-		GFF4367	0.49	+0.9
4,366,807	-		GFF4367	0.49	-0.2
4,366,899	+		GFF4367	0.63	+0.2
4,366,907	-		GFF4367	0.65	-1.2
4,366,907	-		GFF4367	0.65	-0.2
4,366,910	+		GFF4367	0.65	+1.0
4,366,910	+		GFF4367	0.65	-2.0
4,366,918	-		GFF4367	0.66	-2.2
4,366,918	-		GFF4367	0.66	-0.1
4,366,918	-		GFF4367	0.66	-2.2
4,366,918	-		GFF4367	0.66	+0.5
4,366,924	+		GFF4367	0.67	-0.6
4,366,924	+		GFF4367	0.67	-0.2
4,366,968	+		GFF4367	0.74	-0.9
4,366,969	+		GFF4367	0.74	-0.6
4,366,969	+		GFF4367	0.74	-0.2
4,366,969	+		GFF4367	0.74	-1.4
4,366,969	+		GFF4367	0.74	-0.0
4,366,977	-		GFF4367	0.75	+1.1
4,366,984	+		GFF4367	0.76	-0.5
4,366,984	+		GFF4367	0.76	-0.2
4,366,986	+		GFF4367	0.76	-2.0
4,367,007	+		GFF4367	0.80	+0.2
4,367,011	+		GFF4367	0.80	-1.2
4,367,011	+		GFF4367	0.80	-0.0
4,367,032	+		GFF4367	0.83	+0.5
4,367,047	-		GFF4367	0.86	-0.5
4,367,049	+		GFF4367	0.86	+0.2
4,367,049	+		GFF4367	0.86	-0.3
4,367,055	+		GFF4367	0.87	+0.3
4,367,055	+		GFF4367	0.87	+0.6
4,367,057	-		GFF4367	0.87	-0.0
4,367,063	-		GFF4367	0.88	-2.5
4,367,063	-		GFF4367	0.88	+1.3
4,367,063	-		GFF4367	0.88	-1.6
4,367,068	-		GFF4367	0.89	-2.0
4,367,076	+				-0.4
4,367,079	+				-0.0
4,367,082	-				+0.1
4,367,084	-				-1.2
4,367,089	+				+0.8
4,367,089	-				-3.3
4,367,094	+				+0.0
4,367,117	-				-0.8
4,367,123	+				+0.1
4,367,123	+				-0.3
4,367,126	-				-1.0
4,367,205	+		GFF4368	0.23	+0.3
4,367,213	-		GFF4368	0.26	-1.7
4,367,240	+		GFF4368	0.35	-0.6
4,367,245	-		GFF4368	0.36	+0.1
4,367,262	+		GFF4368	0.42	-0.6
4,367,262	+		GFF4368	0.42	-1.1
4,367,262	+		GFF4368	0.42	-0.8
4,367,262	+		GFF4368	0.42	+0.6
4,367,262	+		GFF4368	0.42	+0.2
4,367,262	+		GFF4368	0.42	-1.3
4,367,262	+		GFF4368	0.42	-0.7
4,367,262	+		GFF4368	0.42	-1.1
4,367,262	+		GFF4368	0.42	+0.1
4,367,262	+		GFF4368	0.42	+1.6
4,367,270	-		GFF4368	0.45	-1.1
4,367,270	-		GFF4368	0.45	-1.0
4,367,270	-		GFF4368	0.45	+0.2
4,367,270	-		GFF4368	0.45	-0.8
4,367,270	-		GFF4368	0.45	-0.4
4,367,270	-		GFF4368	0.45	-0.7
4,367,270	-		GFF4368	0.45	+0.3
4,367,270	-		GFF4368	0.45	+0.5
4,367,270	-		GFF4368	0.45	-0.0
4,367,270	-		GFF4368	0.45	-1.6
4,367,270	-		GFF4368	0.45	-1.2
4,367,270	-		GFF4368	0.45	-0.1
4,367,270	-		GFF4368	0.45	+0.9
4,367,270	-		GFF4368	0.45	+0.1
4,367,270	-		GFF4368	0.45	-0.0
4,367,270	-		GFF4368	0.45	+0.7
4,367,271	-		GFF4368	0.45	+1.0
4,367,272	+		GFF4368	0.46	+1.4
4,367,272	+		GFF4368	0.46	-0.1
4,367,280	-		GFF4368	0.48	-0.4
4,367,280	-		GFF4368	0.48	-0.5
4,367,287	+		GFF4368	0.51	-2.2
4,367,287	-		GFF4368	0.51	-2.6
4,367,301	+		GFF4368	0.55	-0.8
4,367,304	+		GFF4368	0.56	-1.7
4,367,306	+		GFF4368	0.57	-1.3
4,367,306	+		GFF4368	0.57	+0.1
4,367,306	+		GFF4368	0.57	-0.0
4,367,306	+		GFF4368	0.57	+0.6
4,367,306	+		GFF4368	0.57	-1.9
4,367,309	-		GFF4368	0.58	+0.9
4,367,316	+		GFF4368	0.61	-0.8
4,367,317	+		GFF4368	0.61	-2.0
4,367,317	+		GFF4368	0.61	-0.5
4,367,322	+		GFF4368	0.63	+0.5
4,367,324	+		GFF4368	0.63	-1.0
4,367,324	+		GFF4368	0.63	-2.3
4,367,332	-		GFF4368	0.66	-1.8
4,367,360	+		GFF4368	0.76	-1.5
4,367,365	+		GFF4368	0.77	+0.8
4,367,368	-		GFF4368	0.78	+0.1
4,367,368	-		GFF4368	0.78	+0.5
4,367,368	-		GFF4368	0.78	-2.2
4,367,373	+		GFF4368	0.80	+0.2
4,367,373	+		GFF4368	0.80	+1.0
4,367,385	-		GFF4368	0.84	+0.6
4,367,386	-		GFF4368	0.84	+0.7
4,367,392	+		GFF4368	0.86	-0.1
4,367,392	+		GFF4368	0.86	+0.4
4,367,392	+		GFF4368	0.86	-0.4
4,367,400	-		GFF4368	0.89	-0.2
4,367,400	-		GFF4368	0.89	-0.2
4,367,400	-		GFF4368	0.89	-0.1
4,367,404	-				+0.4
4,367,409	-				+0.1
4,367,413	+				-1.1
4,367,413	+				+0.8
4,367,413	+				-0.7
4,367,413	+				-1.0
4,367,413	+				+0.5
4,367,421	-				-1.7
4,367,421	-				-0.8
4,367,448	+				-0.2
4,367,451	-				-0.0
4,367,456	+				-0.6
4,367,456	-				+0.8
4,367,458	-				-1.2
4,367,459	-				+1.9
4,367,474	-				-2.1
4,367,475	+				+0.7
4,367,475	+				-0.6
4,367,481	+				-0.5
4,367,489	-				-1.8
4,367,497	+				+0.6
4,367,499	+				+0.6
4,367,505	-				-1.1
4,367,506	-				+0.6
4,367,506	-				+0.2
4,367,506	-				-1.5
4,367,506	-				+1.8
4,367,508	+				+0.6
4,367,508	+				-0.3
4,367,508	+				+0.4
4,367,508	+				+0.4
4,367,508	+				-1.5
4,367,508	+				+0.1
4,367,508	+				-0.7
4,367,508	+				+0.1
4,367,516	-				+0.6
4,367,516	-				+0.2
4,367,516	-				+0.1
4,367,516	-				-0.0
4,367,516	-				+0.3
4,367,516	-				-1.0
4,367,538	-				-0.2
4,367,544	-				-1.3
4,367,544	-				-1.6
4,367,547	+				-0.4
4,367,548	-				-1.1
4,367,550	+				-1.0
4,367,556	+				-2.3
4,367,558	+				+0.3
4,367,566	-				-0.2
4,367,624	+		GFF4369	0.17	-0.2
4,367,630	-		GFF4369	0.17	+1.0
4,367,630	-		GFF4369	0.17	-1.4
4,367,630	-		GFF4369	0.17	-0.7
4,367,630	-		GFF4369	0.17	-0.1
4,367,655	-		GFF4369	0.20	-0.4
4,367,657	-		GFF4369	0.21	-0.4
4,367,676	-		GFF4369	0.23	-0.1
4,367,676	-		GFF4369	0.23	+0.2
4,367,687	+		GFF4369	0.24	-1.8
4,367,722	+		GFF4369	0.28	+1.0
4,367,730	-		GFF4369	0.29	+1.0
4,367,730	-		GFF4369	0.29	-0.5
4,367,768	+		GFF4369	0.34	-0.1
4,367,776	-		GFF4369	0.35	-1.7
4,367,781	-		GFF4369	0.35	+0.5
4,367,792	-		GFF4369	0.37	-0.4
4,367,797	-		GFF4369	0.37	+0.8
4,367,799	+		GFF4369	0.38	-2.4
4,367,809	+		GFF4369	0.39	+0.3
4,367,816	-		GFF4369	0.40	-0.1
4,367,817	-		GFF4369	0.40	+1.3
4,367,836	+		GFF4369	0.42	+0.4
4,367,838	+		GFF4369	0.42	-1.3
4,367,866	+		GFF4369	0.45	-1.3
4,367,874	-		GFF4369	0.46	+1.0
4,367,875	+		GFF4369	0.47	-0.0
4,367,875	+		GFF4369	0.47	-1.4
4,367,883	+		GFF4369	0.47	-1.1
4,367,883	-		GFF4369	0.47	-0.0
4,367,891	-		GFF4369	0.48	-1.2
4,367,898	+		GFF4369	0.49	-0.4
4,367,906	-		GFF4369	0.50	-1.8
4,367,906	-		GFF4369	0.50	+0.4
4,367,917	-		GFF4369	0.52	+0.1
4,367,929	+		GFF4369	0.53	+1.2
4,367,929	+		GFF4369	0.53	-0.6
4,367,937	-		GFF4369	0.54	-0.5
4,367,937	-		GFF4369	0.54	-0.7
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