Strain Fitness in Sphingobium sp. HT1-2 around GFF4334

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,336,720	+		GFF4333	0.34	-2.0
4,336,743	+		GFF4333	0.36	-0.2
4,336,795	+		GFF4333	0.39	-0.5
4,336,796	-		GFF4333	0.39	-0.2
4,336,803	-		GFF4333	0.39	+0.5
4,336,814	-		GFF4333	0.40	+0.5
4,336,824	-		GFF4333	0.41	+1.2
4,336,826	+		GFF4333	0.41	+0.3
4,336,826	+		GFF4333	0.41	+0.3
4,336,826	+		GFF4333	0.41	-0.8
4,336,826	+		GFF4333	0.41	-0.8
4,336,826	+		GFF4333	0.41	+0.2
4,336,834	-		GFF4333	0.42	+0.7
4,336,836	-		GFF4333	0.42	-1.3
4,336,839	+		GFF4333	0.42	-0.9
4,336,839	-		GFF4333	0.42	-1.5
4,336,862	-		GFF4333	0.43	-2.0
4,336,883	+		GFF4333	0.45	-1.9
4,336,890	+		GFF4333	0.45	-1.0
4,336,898	+		GFF4333	0.46	+1.3
4,336,914	+		GFF4333	0.47	+0.3
4,336,916	-		GFF4333	0.47	-1.8
4,336,920	-		GFF4333	0.47	-0.2
4,336,920	-		GFF4333	0.47	-0.4
4,336,922	-		GFF4333	0.47	-0.7
4,336,922	-		GFF4333	0.47	-0.5
4,336,925	-		GFF4333	0.47	+0.7
4,336,933	-		GFF4333	0.48	-0.9
4,336,956	-		GFF4333	0.49	-0.8
4,336,956	-		GFF4333	0.49	-2.1
4,336,958	+		GFF4333	0.50	-1.5
4,336,958	-		GFF4333	0.50	-1.7
4,336,972	+		GFF4333	0.50	+1.2
4,336,987	+		GFF4333	0.51	-1.0
4,336,995	-		GFF4333	0.52	-0.6
4,336,995	-		GFF4333	0.52	+0.8
4,336,995	-		GFF4333	0.52	+0.5
4,337,030	+		GFF4333	0.54	+0.7
4,337,058	-		GFF4333	0.56	+0.4
4,337,058	-		GFF4333	0.56	-0.1
4,337,068	+		GFF4333	0.57	-0.2
4,337,076	-		GFF4333	0.57	-0.5
4,337,080	+		GFF4333	0.57	-0.3
4,337,080	+		GFF4333	0.57	+0.5
4,337,080	+		GFF4333	0.57	-3.0
4,337,088	-		GFF4333	0.58	+0.0
4,337,088	-		GFF4333	0.58	-0.8
4,337,088	-		GFF4333	0.58	-0.1
4,337,088	-		GFF4333	0.58	-1.0
4,337,119	-		GFF4333	0.60	-1.3
4,337,125	+		GFF4333	0.60	-0.2
4,337,126	-		GFF4333	0.60	-1.1
4,337,133	-		GFF4333	0.61	+0.2
4,337,133	-		GFF4333	0.61	+0.8
4,337,143	-		GFF4333	0.62	+0.5
4,337,151	+		GFF4333	0.62	-0.1
4,337,151	+		GFF4333	0.62	+1.0
4,337,161	+		GFF4333	0.63	-0.2
4,337,178	+		GFF4333	0.64	-1.9
4,337,209	+		GFF4333	0.66	+0.2
4,337,211	+		GFF4333	0.66	+0.0
4,337,217	+		GFF4333	0.66	+0.3
4,337,217	+		GFF4333	0.66	+0.4
4,337,219	-		GFF4333	0.66	-0.0
4,337,219	-		GFF4333	0.66	-2.3
4,337,226	-		GFF4333	0.67	-0.3
4,337,250	-		GFF4333	0.68	+1.6
4,337,293	+		GFF4333	0.71	-1.3
4,337,305	+		GFF4333	0.72	+1.9
4,337,305	+		GFF4333	0.72	+0.6
4,337,313	-		GFF4333	0.73	+1.2
4,337,327	-		GFF4333	0.73	-0.1
4,337,327	-		GFF4333	0.73	+0.2
4,337,345	-		GFF4333	0.75	+2.0
4,337,367	-		GFF4333	0.76	-1.0
4,337,367	-		GFF4333	0.76	+0.2
4,337,373	+		GFF4333	0.76	+1.2
4,337,373	+		GFF4333	0.76	+0.3
4,337,373	+		GFF4333	0.76	-0.4
4,337,373	+		GFF4333	0.76	+0.2
4,337,374	+		GFF4333	0.77	-1.2
4,337,374	+		GFF4333	0.77	-0.6
4,337,374	+		GFF4333	0.77	-1.8
4,337,374	+		GFF4333	0.77	+0.0
4,337,374	+		GFF4333	0.77	-0.7
4,337,374	+		GFF4333	0.77	-1.5
4,337,374	+		GFF4333	0.77	-0.1
4,337,374	+		GFF4333	0.77	+0.3
4,337,381	-		GFF4333	0.77	-0.4
4,337,382	-		GFF4333	0.77	-0.3
4,337,382	-		GFF4333	0.77	-0.5
4,337,382	-		GFF4333	0.77	+1.8
4,337,382	-		GFF4333	0.77	-0.6
4,337,394	+		GFF4333	0.78	+0.8
4,337,398	+		GFF4333	0.78	+0.4
4,337,402	-		GFF4333	0.78	-1.7
4,337,402	-		GFF4333	0.78	-0.1
4,337,436	+		GFF4333	0.81	-1.6
4,337,449	-		GFF4333	0.81	+0.7
4,337,455	+		GFF4333	0.82	-0.4
4,337,455	+		GFF4333	0.82	+0.8
4,337,463	-		GFF4333	0.82	-1.5
4,337,473	+		GFF4333	0.83	-0.4
4,337,473	+		GFF4333	0.83	-2.0
4,337,473	-		GFF4333	0.83	-1.5
4,337,476	+		GFF4333	0.83	-0.3
4,337,484	-		GFF4333	0.84	+0.3
4,337,491	+		GFF4333	0.84	+1.0
4,337,492	+		GFF4333	0.84	-0.1
4,337,511	+		GFF4333	0.85	-1.1
4,337,513	+		GFF4333	0.86	+1.0
4,337,520	-		GFF4333	0.86	+0.0
4,337,526	+		GFF4333	0.86	-1.1
4,337,552	+		GFF4333	0.88	-2.1
4,337,557	+		GFF4333	0.88	-0.2
4,337,557	+		GFF4333	0.88	+0.0
4,337,557	+		GFF4333	0.88	-0.5
4,337,558	+		GFF4333	0.88	-1.6
4,337,560	-		GFF4333	0.89	+0.2
4,337,565	-		GFF4333	0.89	+0.3
4,337,565	-		GFF4333	0.89	+0.3
4,337,596	+				+1.4
4,337,599	-				+0.2
4,337,604	-				-0.6
4,337,608	+				+1.5
4,337,620	+				-1.4
4,337,620	+				+0.2
4,337,620	+				+0.9
4,337,621	-				+1.4
4,337,628	-				-0.5
4,337,628	-				-1.2
4,337,628	-				+0.2
4,337,675	-				-0.4
4,337,702	+				+0.5
4,337,702	+				+0.3
4,337,702	+				+0.6
4,337,702	+				-0.3
4,337,702	+				-1.0
4,337,707	-				-0.3
4,337,710	-				+0.0
4,337,710	-				+0.4
4,337,710	-				-2.0
4,337,710	-				-0.8
4,337,712	+				-0.4
4,337,712	+				+1.1
4,337,720	-				-2.0
4,337,725	+				+0.6
4,337,725	+				+0.1
4,337,725	+				-1.2
4,337,732	+				-2.4
4,337,732	+				+1.1
4,337,733	-				-0.2
4,337,733	-				-0.3
4,337,733	-				+0.5
4,337,737	+				-1.1
4,337,740	-				-0.5
4,337,745	-				-1.7
4,337,781	+				+0.6
4,337,789	-				-1.9
4,337,814	-				-0.8
4,337,823	+		GFF4334	0.11	-1.7
4,337,823	+		GFF4334	0.11	-0.0
4,337,840	-		GFF4334	0.13	-1.4
4,337,841	-		GFF4334	0.13	+0.7
4,337,841	-		GFF4334	0.13	-0.3
4,337,843	-		GFF4334	0.13	+0.6
4,337,861	-		GFF4334	0.15	-0.4
4,337,882	+		GFF4334	0.17	-1.5
4,337,882	+		GFF4334	0.17	-2.5
4,337,888	+		GFF4334	0.18	-2.0
4,337,890	-		GFF4334	0.18	-0.0
4,337,898	+		GFF4334	0.19	-0.9
4,337,919	-		GFF4334	0.21	-1.8
4,337,920	-		GFF4334	0.21	-1.0
4,337,929	-		GFF4334	0.22	-0.2
4,337,972	+		GFF4334	0.26	+0.6
4,337,997	+		GFF4334	0.29	-0.7
4,337,999	+		GFF4334	0.29	+0.2
4,337,999	+		GFF4334	0.29	-0.2
4,337,999	+		GFF4334	0.29	+1.2
4,337,999	+		GFF4334	0.29	-1.0
4,337,999	+		GFF4334	0.29	-1.8
4,337,999	+		GFF4334	0.29	-0.5
4,337,999	+		GFF4334	0.29	-0.2
4,337,999	+		GFF4334	0.29	+0.5
4,337,999	+		GFF4334	0.29	-1.9
4,338,004	+		GFF4334	0.30	-0.1
4,338,006	-		GFF4334	0.30	-0.9
4,338,007	-		GFF4334	0.30	+0.2
4,338,007	-		GFF4334	0.30	-0.0
4,338,007	-		GFF4334	0.30	-1.8
4,338,007	-		GFF4334	0.30	-2.7
4,338,007	-		GFF4334	0.30	-0.4
4,338,007	-		GFF4334	0.30	-2.7
4,338,007	-		GFF4334	0.30	+0.3
4,338,007	-		GFF4334	0.30	-0.8
4,338,014	+		GFF4334	0.31	-0.1
4,338,014	+		GFF4334	0.31	-1.0
4,338,014	+		GFF4334	0.31	+0.6
4,338,014	+		GFF4334	0.31	-0.1
4,338,014	+		GFF4334	0.31	+1.7
4,338,014	+		GFF4334	0.31	+0.7
4,338,014	+		GFF4334	0.31	+0.8
4,338,014	-		GFF4334	0.31	+0.4
4,338,022	-		GFF4334	0.31	+0.7
4,338,022	-		GFF4334	0.31	-0.1
4,338,022	-		GFF4334	0.31	-0.1
4,338,022	-		GFF4334	0.31	+0.6
4,338,022	-		GFF4334	0.31	-1.8
4,338,022	-		GFF4334	0.31	+0.5
4,338,022	-		GFF4334	0.31	-0.3
4,338,026	+		GFF4334	0.32	+0.1
4,338,026	+		GFF4334	0.32	-1.7
4,338,034	-		GFF4334	0.33	-1.0
4,338,038	+		GFF4334	0.33	-0.1
4,338,045	+		GFF4334	0.34	-0.0
4,338,046	-		GFF4334	0.34	-0.2
4,338,053	-		GFF4334	0.35	-0.9
4,338,053	-		GFF4334	0.35	-0.1
4,338,058	+		GFF4334	0.35	-0.7
4,338,089	-		GFF4334	0.38	-1.2
4,338,116	+		GFF4334	0.41	-0.8
4,338,116	+		GFF4334	0.41	+0.3
4,338,116	+		GFF4334	0.41	+0.9
4,338,116	+		GFF4334	0.41	+0.6
4,338,118	+		GFF4334	0.41	-0.3
4,338,118	+		GFF4334	0.41	+0.8
4,338,118	-		GFF4334	0.41	+0.7
4,338,123	-		GFF4334	0.42	-0.8
4,338,124	-		GFF4334	0.42	-0.3
4,338,124	-		GFF4334	0.42	-1.0
4,338,124	-		GFF4334	0.42	-0.3
4,338,124	-		GFF4334	0.42	+0.7
4,338,126	+		GFF4334	0.42	-0.4
4,338,126	+		GFF4334	0.42	+0.1
4,338,126	+		GFF4334	0.42	-0.3
4,338,131	+		GFF4334	0.43	+1.0
4,338,138	+		GFF4334	0.44	+0.4
4,338,138	+		GFF4334	0.44	+0.9
4,338,138	+		GFF4334	0.44	-1.1
4,338,146	-		GFF4334	0.44	-0.2
4,338,146	-		GFF4334	0.44	-1.5
4,338,146	-		GFF4334	0.44	-1.0
4,338,151	+		GFF4334	0.45	-2.4
4,338,151	+		GFF4334	0.45	-0.1
4,338,177	-		GFF4334	0.48	-0.2
4,338,188	+		GFF4334	0.49	+0.1
4,338,197	-		GFF4334	0.50	+0.2
4,338,198	+		GFF4334	0.50	+0.9
4,338,198	+		GFF4334	0.50	-0.8
4,338,198	+		GFF4334	0.50	+0.3
4,338,198	+		GFF4334	0.50	+0.5
4,338,198	+		GFF4334	0.50	-0.1
4,338,206	+		GFF4334	0.51	-1.4
4,338,206	+		GFF4334	0.51	-2.0
4,338,206	+		GFF4334	0.51	+0.2
4,338,206	+		GFF4334	0.51	+0.4
4,338,206	-		GFF4334	0.51	-0.3
4,338,211	+		GFF4334	0.51	-0.5
4,338,211	+		GFF4334	0.51	-1.7
4,338,211	+		GFF4334	0.51	-0.2
4,338,211	+		GFF4334	0.51	+0.5
4,338,214	-		GFF4334	0.51	-2.0
4,338,219	-		GFF4334	0.52	+0.2
4,338,219	-		GFF4334	0.52	-0.8
4,338,221	+		GFF4334	0.52	-1.0
4,338,229	-		GFF4334	0.53	+0.5
4,338,229	-		GFF4334	0.53	-1.0
4,338,238	-		GFF4334	0.54	+0.7
4,338,245	+		GFF4334	0.55	+0.0
4,338,253	-		GFF4334	0.55	-0.4
4,338,253	-		GFF4334	0.55	+0.5
4,338,253	-		GFF4334	0.55	-1.1
4,338,253	-		GFF4334	0.55	+0.0
4,338,262	+		GFF4334	0.56	-3.4
4,338,263	+		GFF4334	0.56	+0.2
4,338,275	+		GFF4334	0.58	+0.2
4,338,278	-		GFF4334	0.58	-0.9
4,338,280	+		GFF4334	0.58	+0.6
4,338,281	+		GFF4334	0.58	-0.5
4,338,283	-		GFF4334	0.59	+0.2
4,338,310	+		GFF4334	0.61	-1.2
4,338,315	-		GFF4334	0.62	+0.6
4,338,317	+		GFF4334	0.62	-1.4
4,338,318	-		GFF4334	0.62	-0.3
4,338,326	+		GFF4334	0.63	+0.6
4,338,326	+		GFF4334	0.63	+0.5
4,338,328	-		GFF4334	0.63	-2.0
4,338,334	-		GFF4334	0.64	-0.9
4,338,334	-		GFF4334	0.64	-1.0
4,338,334	-		GFF4334	0.64	-0.5
4,338,334	-		GFF4334	0.64	-0.2
4,338,336	-		GFF4334	0.64	-0.4
4,338,336	-		GFF4334	0.64	-0.8
4,338,347	+		GFF4334	0.65	-2.1
4,338,359	+		GFF4334	0.66	-0.0
4,338,403	-		GFF4334	0.71	+0.0
4,338,425	+		GFF4334	0.73	-0.2
4,338,425	+		GFF4334	0.73	+0.5
4,338,431	-		GFF4334	0.74	-1.7
4,338,460	+		GFF4334	0.77	-1.8
4,338,488	+		GFF4334	0.80	-1.1
4,338,506	+		GFF4334	0.82	+0.7
4,338,506	+		GFF4334	0.82	+0.4
4,338,514	-		GFF4334	0.83	+0.6
4,338,527	+		GFF4334	0.84	+1.6
4,338,527	+		GFF4334	0.84	-0.1
4,338,527	+		GFF4334	0.84	-1.6
4,338,527	+		GFF4334	0.84	+1.6
4,338,527	+		GFF4334	0.84	-0.1
4,338,527	+		GFF4334	0.84	-0.8
4,338,527	+		GFF4334	0.84	-0.3
4,338,527	+		GFF4334	0.84	-0.1
4,338,527	+		GFF4334	0.84	-0.5
4,338,527	+		GFF4334	0.84	-0.0
4,338,527	+		GFF4334	0.84	-0.6
4,338,527	+		GFF4334	0.84	+1.0
4,338,530	-		GFF4334	0.84	+0.0
4,338,532	-		GFF4334	0.84	+1.2
4,338,535	-		GFF4334	0.85	-1.7
4,338,535	-		GFF4334	0.85	-1.0
4,338,535	-		GFF4334	0.85	-0.7
4,338,535	-		GFF4334	0.85	-1.5
4,338,535	-		GFF4334	0.85	-0.3
4,338,535	-		GFF4334	0.85	+0.4
4,338,535	-		GFF4334	0.85	-1.9
4,338,535	-		GFF4334	0.85	-0.6
4,338,539	+		GFF4334	0.85	-0.2
4,338,539	+		GFF4334	0.85	-0.3
4,338,539	+		GFF4334	0.85	+0.6
4,338,545	-		GFF4334	0.86	+0.5
4,338,551	+		GFF4334	0.86	-0.7
4,338,551	+		GFF4334	0.86	-0.2
4,338,575	+		GFF4334	0.89	-1.1
4,338,575	-		GFF4334	0.89	+0.9
4,338,579	+		GFF4334	0.89	+0.5
4,338,579	+		GFF4334	0.89	-0.1
4,338,583	-		GFF4334	0.90	-0.5
4,338,592	+				-0.7
4,338,592	+				-1.6
4,338,594	+				-0.7
4,338,594	+				+0.6
4,338,594	+				-0.2
4,338,599	+				+1.0
4,338,602	-				+0.1
4,338,612	-				-0.1
4,338,612	-				-0.7
4,338,617	+				+1.5
4,338,619	-				-1.4
4,338,629	-				-0.5
4,338,658	-				-2.3
4,338,670	+				-1.0
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