Strain Fitness in Sphingobium sp. HT1-2 around GFF4329

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,331,092	+		GFF4326	0.86	-1.2
4,331,100	-		GFF4326	0.87	-0.5
4,331,106	-		GFF4326	0.87	+0.4
4,331,108	+		GFF4326	0.88	-2.0
4,331,116	-		GFF4326	0.88	-0.4
4,331,122	+		GFF4326	0.89	+1.0
4,331,130	-		GFF4326	0.89	+1.2
4,331,131	-		GFF4326	0.89	+1.0
4,331,132	+		GFF4326	0.89	+0.5
4,331,132	+		GFF4326	0.89	+0.6
4,331,132	+		GFF4326	0.89	+0.1
4,331,132	+		GFF4326	0.89	+0.4
4,331,133	+		GFF4326	0.89	-0.1
4,331,204	-				-0.2
4,331,238	+				+0.8
4,331,251	-				-1.0
4,331,255	+				+0.1
4,331,256	-				-2.4
4,331,256	-				-0.7
4,331,258	+				+0.5
4,331,258	+				-2.0
4,331,258	+				+0.4
4,331,258	+				+0.8
4,331,258	+				+1.0
4,331,258	+				+0.3
4,331,258	+				-1.5
4,331,258	+				+0.3
4,331,258	+				-0.3
4,331,258	+				-0.3
4,331,258	+				-0.5
4,331,258	+				-0.5
4,331,258	+				+0.1
4,331,258	+				+0.8
4,331,258	+				+0.5
4,331,258	+				-0.9
4,331,258	+				-0.6
4,331,258	+				-0.2
4,331,258	+				+0.6
4,331,258	+				-2.5
4,331,258	+				-0.3
4,331,258	+				-1.4
4,331,258	+				-1.1
4,331,258	+				+0.9
4,331,261	-				+1.3
4,331,266	-				+0.5
4,331,266	-				-1.0
4,331,266	-				-1.7
4,331,266	-				-1.0
4,331,266	-				-0.9
4,331,266	-				-2.4
4,331,266	-				-1.2
4,331,266	-				+0.2
4,331,266	-				-0.2
4,331,266	-				+0.0
4,331,266	-				+0.5
4,331,266	-				+0.3
4,331,266	-				+0.4
4,331,266	-				-1.4
4,331,266	-				-0.4
4,331,266	-				+0.2
4,331,279	-				+1.1
4,331,279	-				+0.6
4,331,299	-				-1.6
4,331,305	-				+1.3
4,331,310	+				-2.0
4,331,310	+				+0.1
4,331,310	+				-0.3
4,331,318	-				+0.9
4,331,318	-				-2.5
4,331,318	-				+1.2
4,331,339	+				-1.9
4,331,347	+				-1.0
4,331,361	+				-1.5
4,331,361	+				+0.9
4,331,361	+				-0.2
4,331,361	+				-1.0
4,331,361	+				+0.1
4,331,361	+				-0.8
4,331,361	+				-1.2
4,331,361	+				-0.0
4,331,368	-				+0.4
4,331,369	-				+0.7
4,331,369	-				+1.2
4,331,369	-				+0.5
4,331,369	-				+0.4
4,331,369	-				-1.4
4,331,369	-				-1.1
4,331,369	-				+0.5
4,331,369	-				-0.4
4,331,369	-				-1.0
4,331,369	-				+0.0
4,331,369	-				+0.8
4,331,369	-				+0.1
4,331,369	-				-1.0
4,331,369	-				+0.6
4,331,369	-				-0.5
4,331,369	-				-2.1
4,331,369	-				+0.7
4,331,374	-				-0.4
4,331,386	+				-0.8
4,331,394	+				-0.2
4,331,396	+				+1.0
4,331,396	+				-1.7
4,331,396	+				+0.4
4,331,396	+				-2.0
4,331,396	+				-0.0
4,331,404	-				+0.0
4,331,404	-				+0.6
4,331,404	-				-1.1
4,331,404	-				-0.8
4,331,404	-				-1.3
4,331,410	-				-1.5
4,331,429	+				+0.3
4,331,437	-				-0.6
4,331,444	+				-0.4
4,331,447	-				+1.6
4,331,449	-				-1.2
4,331,463	+				-0.7
4,331,463	+				-1.7
4,331,464	+				+0.0
4,331,470	+				+0.3
4,331,470	+				-0.6
4,331,470	-				-0.4
4,331,471	-				-0.3
4,331,471	-				+0.5
4,331,471	-				-0.5
4,331,472	-				-0.6
4,331,472	-				-0.3
4,331,477	-				+0.2
4,331,489	+				-1.2
4,331,490	+				+0.2
4,331,490	+				+1.2
4,331,497	-				-0.5
4,331,497	-				+1.0
4,331,497	-				+0.8
4,331,498	-				+0.8
4,331,498	-				-0.2
4,331,528	+		GFF4327	0.26	+0.6
4,331,535	+		GFF4327	0.30	-1.7
4,331,537	-		GFF4327	0.32	-0.0
4,331,543	-		GFF4327	0.35	+0.9
4,331,561	-		GFF4327	0.46	+1.1
4,331,570	+		GFF4327	0.51	-1.3
4,331,580	+		GFF4327	0.57	+0.6
4,331,587	-		GFF4327	0.61	-2.0
4,331,589	+		GFF4327	0.62	+0.0
4,331,596	+		GFF4327	0.66	-0.4
4,331,596	+		GFF4327	0.66	+0.3
4,331,596	+		GFF4327	0.66	-1.3
4,331,596	+		GFF4327	0.66	-0.9
4,331,599	+		GFF4327	0.68	-0.9
4,331,604	-		GFF4327	0.71	+0.6
4,331,604	-		GFF4327	0.71	-0.1
4,331,604	-		GFF4327	0.71	-0.5
4,331,604	-		GFF4327	0.71	-0.9
4,331,612	-		GFF4327	0.75	-1.8
4,331,614	-		GFF4327	0.77	-1.3
4,331,614	-		GFF4327	0.77	-0.4
4,331,614	-		GFF4327	0.77	-2.0
4,331,623	+		GFF4327	0.82	-1.1
4,331,639	+				+0.6
4,331,639	+				-0.1
4,331,639	+				+0.1
4,331,639	+				-1.7
4,331,647	-				-0.9
4,331,647	-				+0.1
4,331,663	+				-0.2
4,331,663	+				+0.8
4,331,670	-				-1.8
4,331,671	-				-1.1
4,331,671	-				-0.4
4,331,671	-				-0.1
4,331,671	-				+1.4
4,331,671	-				-1.7
4,331,673	+				-0.3
4,331,703	+				+0.2
4,331,703	+				-0.4
4,331,736	+				-0.1
4,331,736	+				-0.0
4,331,736	+				-0.1
4,331,736	+				-2.2
4,331,736	+				-0.9
4,331,736	+				+0.0
4,331,736	+				-0.2
4,331,736	+				-0.3
4,331,736	+				+0.4
4,331,736	+				+0.3
4,331,739	-		GFF4328	0.11	+0.6
4,331,741	+		GFF4328	0.11	+1.2
4,331,743	+		GFF4328	0.12	-1.0
4,331,744	-		GFF4328	0.12	+0.8
4,331,744	-		GFF4328	0.12	+1.5
4,331,755	+		GFF4328	0.15	-2.4
4,331,763	-		GFF4328	0.17	-0.1
4,331,805	+		GFF4328	0.28	-0.4
4,331,805	+		GFF4328	0.28	-0.4
4,331,807	-		GFF4328	0.28	-2.2
4,331,813	-		GFF4328	0.30	+0.5
4,331,815	+		GFF4328	0.30	+0.5
4,331,815	+		GFF4328	0.30	+0.6
4,331,823	-		GFF4328	0.32	+0.6
4,331,836	+		GFF4328	0.36	-0.5
4,331,846	-		GFF4328	0.38	-1.0
4,331,861	-		GFF4328	0.42	-0.9
4,331,870	+		GFF4328	0.44	-2.8
4,331,870	+		GFF4328	0.44	-1.3
4,331,870	+		GFF4328	0.44	-1.4
4,331,875	+		GFF4328	0.46	-0.0
4,331,875	+		GFF4328	0.46	+0.7
4,331,878	-		GFF4328	0.47	-0.1
4,331,882	-		GFF4328	0.48	+0.5
4,331,884	+		GFF4328	0.48	+0.3
4,331,886	+		GFF4328	0.49	-2.4
4,331,886	+		GFF4328	0.49	+1.1
4,331,886	+		GFF4328	0.49	-0.9
4,331,886	+		GFF4328	0.49	-0.6
4,331,886	+		GFF4328	0.49	-0.9
4,331,886	+		GFF4328	0.49	-1.3
4,331,886	+		GFF4328	0.49	+0.0
4,331,886	+		GFF4328	0.49	+1.3
4,331,886	+		GFF4328	0.49	-2.4
4,331,886	+		GFF4328	0.49	-0.0
4,331,886	+		GFF4328	0.49	-0.5
4,331,886	+		GFF4328	0.49	-1.6
4,331,886	+		GFF4328	0.49	-0.3
4,331,886	+		GFF4328	0.49	-0.6
4,331,886	+		GFF4328	0.49	-0.3
4,331,886	+		GFF4328	0.49	-1.4
4,331,894	-		GFF4328	0.51	-0.4
4,331,894	-		GFF4328	0.51	+0.7
4,331,894	-		GFF4328	0.51	+0.9
4,331,894	-		GFF4328	0.51	+0.4
4,331,894	-		GFF4328	0.51	+0.1
4,331,894	-		GFF4328	0.51	-0.6
4,331,894	-		GFF4328	0.51	-1.5
4,331,894	-		GFF4328	0.51	-1.0
4,331,894	-		GFF4328	0.51	+0.1
4,331,894	-		GFF4328	0.51	+0.7
4,331,894	-		GFF4328	0.51	-0.1
4,331,895	-		GFF4328	0.51	-0.1
4,331,897	+		GFF4328	0.51	+0.5
4,331,905	-		GFF4328	0.53	+0.6
4,331,905	-		GFF4328	0.53	-1.5
4,331,905	-		GFF4328	0.53	-1.2
4,331,928	-		GFF4328	0.59	-0.3
4,331,948	+		GFF4328	0.65	+0.8
4,331,968	-		GFF4328	0.70	-0.7
4,331,971	+		GFF4328	0.71	-0.4
4,331,971	+		GFF4328	0.71	-0.4
4,331,971	+		GFF4328	0.71	+0.5
4,331,971	+		GFF4328	0.71	+0.0
4,331,978	-		GFF4328	0.72	+0.0
4,331,978	-		GFF4328	0.72	-1.7
4,331,978	-		GFF4328	0.72	-0.1
4,331,978	-		GFF4328	0.72	-1.3
4,331,978	-		GFF4328	0.72	+0.2
4,331,979	-		GFF4328	0.73	-0.9
4,331,979	-		GFF4328	0.73	+0.3
4,331,979	-		GFF4328	0.73	-0.9
4,331,979	-		GFF4328	0.73	+0.0
4,331,998	+		GFF4328	0.78	-0.1
4,332,000	-		GFF4328	0.78	+0.2
4,332,020	+		GFF4328	0.83	-0.2
4,332,028	+		GFF4328	0.85	+0.2
4,332,036	-		GFF4328	0.87	-1.4
4,332,113	+				+0.1
4,332,113	+				+0.0
4,332,113	+				-1.0
4,332,113	+				-0.4
4,332,113	+				+0.6
4,332,113	+				-0.2
4,332,121	-				-0.2
4,332,121	-				+0.5
4,332,121	-				+0.6
4,332,121	-				-1.9
4,332,121	-				+1.7
4,332,121	-				-1.9
4,332,131	+				-0.2
4,332,131	+				-0.9
4,332,145	-				-1.8
4,332,146	-				+0.6
4,332,154	+				+0.2
4,332,154	+				-0.7
4,332,156	-				+0.4
4,332,162	-				-0.1
4,332,194	-		GFF4329	0.12	+0.1
4,332,196	+		GFF4329	0.12	+0.6
4,332,220	+		GFF4329	0.14	-0.0
4,332,228	-		GFF4329	0.15	-1.5
4,332,228	-		GFF4329	0.15	+1.0
4,332,228	-		GFF4329	0.15	+0.1
4,332,259	+		GFF4329	0.18	-0.5
4,332,269	-		GFF4329	0.19	-0.0
4,332,269	-		GFF4329	0.19	-1.6
4,332,286	+		GFF4329	0.21	+0.1
4,332,318	-		GFF4329	0.24	+0.3
4,332,319	+		GFF4329	0.24	+0.0
4,332,319	+		GFF4329	0.24	-0.4
4,332,319	+		GFF4329	0.24	-1.0
4,332,319	+		GFF4329	0.24	-0.7
4,332,320	+		GFF4329	0.24	+1.0
4,332,322	-		GFF4329	0.25	+0.3
4,332,327	-		GFF4329	0.25	-1.2
4,332,327	-		GFF4329	0.25	+0.4
4,332,327	-		GFF4329	0.25	-0.5
4,332,327	-		GFF4329	0.25	-0.5
4,332,327	-		GFF4329	0.25	-0.4
4,332,327	-		GFF4329	0.25	-0.8
4,332,327	-		GFF4329	0.25	+0.0
4,332,328	-		GFF4329	0.25	-0.0
4,332,332	-		GFF4329	0.26	-0.9
4,332,332	-		GFF4329	0.26	-1.4
4,332,332	-		GFF4329	0.26	-0.3
4,332,334	+		GFF4329	0.26	-0.8
4,332,334	+		GFF4329	0.26	-0.8
4,332,334	+		GFF4329	0.26	+0.0
4,332,334	+		GFF4329	0.26	+0.6
4,332,334	+		GFF4329	0.26	-1.9
4,332,334	+		GFF4329	0.26	-0.6
4,332,334	+		GFF4329	0.26	-0.5
4,332,334	+		GFF4329	0.26	-0.7
4,332,342	-		GFF4329	0.27	+0.2
4,332,342	-		GFF4329	0.27	-0.7
4,332,342	-		GFF4329	0.27	+2.4
4,332,342	-		GFF4329	0.27	+0.5
4,332,363	+		GFF4329	0.29	-0.1
4,332,366	-		GFF4329	0.29	+0.0
4,332,368	+		GFF4329	0.29	-0.9
4,332,368	+		GFF4329	0.29	+1.6
4,332,368	+		GFF4329	0.29	-0.3
4,332,368	+		GFF4329	0.29	-0.8
4,332,368	+		GFF4329	0.29	-1.0
4,332,368	+		GFF4329	0.29	-2.3
4,332,368	+		GFF4329	0.29	+1.3
4,332,368	+		GFF4329	0.29	+0.5
4,332,368	+		GFF4329	0.29	+1.3
4,332,368	+		GFF4329	0.29	+0.1
4,332,376	-		GFF4329	0.30	+0.8
4,332,376	-		GFF4329	0.30	+0.5
4,332,376	-		GFF4329	0.30	-0.3
4,332,376	-		GFF4329	0.30	+0.2
4,332,394	-		GFF4329	0.32	-0.5
4,332,507	+		GFF4329	0.43	-0.1
4,332,545	-		GFF4329	0.47	+0.9
4,332,545	-		GFF4329	0.47	+0.6
4,332,545	-		GFF4329	0.47	-0.3
4,332,549	-		GFF4329	0.48	+1.2
4,332,549	-		GFF4329	0.48	-1.0
4,332,549	-		GFF4329	0.48	+1.7
4,332,549	-		GFF4329	0.48	+0.7
4,332,554	-		GFF4329	0.48	+0.1
4,332,563	-		GFF4329	0.49	+0.4
4,332,566	-		GFF4329	0.49	+0.9
4,333,137	+				+0.4
4,333,144	+				-0.4
4,333,145	-				-0.9
4,333,149	+				-0.4
4,333,149	-				-1.3
4,333,197	-				-0.3
4,333,198	+				-1.3
4,333,219	+				-0.1
4,333,225	-				-0.0
4,333,228	+				+0.3
4,333,236	-				-0.1
4,333,248	+				-2.1
4,333,254	-				-1.0
4,333,258	+				-0.1
4,333,258	+				+0.6
4,333,258	+				+0.6
4,333,258	+				+0.0
4,333,261	-				+0.9
4,333,265	+				-0.4
4,333,265	+				-0.2
4,333,265	+				-0.7
4,333,265	+				+0.5
4,333,265	+				-1.8
4,333,265	+				-0.5
4,333,265	+				-0.2
4,333,265	+				-0.1
4,333,265	+				-0.2
4,333,265	+				-1.8
4,333,265	+				+0.9
4,333,265	+				-0.4
4,333,265	+				-1.1
4,333,265	+				-1.1
4,333,265	+				+0.6
4,333,265	+				+0.2
4,333,265	+				+0.8
4,333,266	-				-0.4
4,333,266	-				+0.3
4,333,266	-				-0.6
4,333,270	+				-1.0
4,333,271	-				-1.2
4,333,271	-				-1.1
4,333,271	-				+0.6
4,333,271	-				+0.5
4,333,271	-				+0.0
4,333,273	-				+0.3
4,333,273	-				+0.1
4,333,273	-				-0.2
4,333,273	-				+0.3
4,333,273	-				+0.6
4,333,273	-				-0.2
4,333,273	-				-0.8
4,333,273	-				+0.8
4,333,273	-				-1.1
4,333,273	-				-1.5
4,333,273	-				-0.8
4,333,275	+				-0.9
4,333,278	-				-1.8
4,333,287	+				-0.4
4,333,287	+				-1.7
4,333,287	+				-0.8
4,333,287	+				+1.0
4,333,288	-				-0.9
4,333,288	-				-0.4
4,333,290	-				+0.8
4,333,292	+				+0.5
4,333,295	-				-0.4
4,333,299	+				-0.5
4,333,301	+				-0.0
4,333,309	-				-1.0
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