Strain Fitness in Sphingobium sp. HT1-2 around GFF4288

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,297,558	+		GFF4286	0.15	-0.5
4,297,558	+		GFF4286	0.15	+0.6
4,297,558	-		GFF4286	0.15	+0.4
4,297,558	-		GFF4286	0.15	+0.1
4,297,584	+		GFF4286	0.23	-1.9
4,297,604	+		GFF4286	0.30	-0.1
4,297,607	-		GFF4286	0.31	-0.5
4,297,612	-		GFF4286	0.32	-1.0
4,297,612	-		GFF4286	0.32	+0.5
4,297,614	+		GFF4286	0.33	+0.5
4,297,622	-		GFF4286	0.36	-0.5
4,297,637	+		GFF4286	0.41	+0.2
4,297,710	-		GFF4286	0.65	-0.1
4,297,711	+		GFF4286	0.65	+0.8
4,297,719	-		GFF4286	0.68	+0.5
4,297,732	+		GFF4286	0.72	+0.0
4,297,745	-		GFF4286	0.76	+1.0
4,297,745	-		GFF4286	0.76	-0.3
4,297,760	-		GFF4286	0.81	-0.4
4,297,760	-		GFF4286	0.81	+0.6
4,297,769	+		GFF4286	0.84	+0.3
4,297,769	+		GFF4286	0.84	+0.8
4,297,777	-		GFF4286	0.87	-0.3
4,297,777	-		GFF4286	0.87	+0.3
4,297,777	-		GFF4286	0.87	+0.4
4,297,789	-				+0.3
4,297,803	+				+0.6
4,297,804	-				-1.6
4,297,804	-				+0.5
4,297,804	-				-0.7
4,297,804	-				-1.8
4,297,810	+				+0.3
4,297,811	-				-0.5
4,297,811	-				-0.7
4,297,812	+				-0.0
4,297,812	+				-2.1
4,297,812	+				+0.5
4,297,812	+				-0.2
4,297,820	-				-0.4
4,297,859	+				-0.2
4,297,867	-				-0.8
4,297,867	-				+0.3
4,297,867	-				+0.7
4,297,878	+				-1.7
4,297,906	+				-0.4
4,297,909	-				-0.1
4,297,911	+				+1.0
4,297,911	+				-1.3
4,297,942	+				+0.0
4,297,942	+				+0.8
4,297,942	+				+0.3
4,297,942	+				-0.0
4,297,942	+				+0.1
4,297,944	+				+0.5
4,297,944	+				-0.0
4,297,944	+				-0.7
4,297,944	+				-0.4
4,297,949	+				-0.3
4,297,950	-				-0.3
4,297,950	-				+0.6
4,297,950	-				-1.4
4,297,952	-				-1.6
4,297,952	-				-1.3
4,297,952	-				-0.0
4,297,952	-				-1.7
4,297,952	-				-0.1
4,297,952	-				+1.3
4,297,957	-				-0.5
4,297,962	+				+0.4
4,297,968	+		GFF4287	0.11	+1.1
4,297,973	+		GFF4287	0.12	-1.8
4,298,019	+		GFF4287	0.19	-0.7
4,298,027	-		GFF4287	0.20	-0.1
4,298,027	-		GFF4287	0.20	+0.1
4,298,027	-		GFF4287	0.20	-2.7
4,298,031	+		GFF4287	0.21	-0.6
4,298,031	+		GFF4287	0.21	+0.5
4,298,032	+		GFF4287	0.21	+0.2
4,298,034	-		GFF4287	0.21	+0.8
4,298,037	+		GFF4287	0.22	+1.1
4,298,038	+		GFF4287	0.22	+0.4
4,298,038	+		GFF4287	0.22	-1.1
4,298,039	-		GFF4287	0.22	+0.4
4,298,043	+		GFF4287	0.23	+0.2
4,298,043	+		GFF4287	0.23	-0.2
4,298,043	+		GFF4287	0.23	+0.3
4,298,043	+		GFF4287	0.23	-1.2
4,298,043	+		GFF4287	0.23	+0.7
4,298,043	+		GFF4287	0.23	+0.2
4,298,043	+		GFF4287	0.23	+0.0
4,298,043	+		GFF4287	0.23	-1.4
4,298,043	+		GFF4287	0.23	+0.3
4,298,043	+		GFF4287	0.23	+0.1
4,298,043	+		GFF4287	0.23	-0.7
4,298,043	+		GFF4287	0.23	-0.6
4,298,043	+		GFF4287	0.23	-0.3
4,298,043	+		GFF4287	0.23	-0.1
4,298,043	+		GFF4287	0.23	-0.7
4,298,043	+		GFF4287	0.23	+0.0
4,298,043	+		GFF4287	0.23	-0.4
4,298,043	+		GFF4287	0.23	-0.4
4,298,043	+		GFF4287	0.23	-0.1
4,298,043	+		GFF4287	0.23	+1.9
4,298,043	+		GFF4287	0.23	-0.9
4,298,043	+		GFF4287	0.23	+0.4
4,298,043	+		GFF4287	0.23	-0.3
4,298,046	-		GFF4287	0.23	-0.1
4,298,046	-		GFF4287	0.23	-1.0
4,298,046	-		GFF4287	0.23	-0.8
4,298,051	+		GFF4287	0.24	-1.3
4,298,051	-		GFF4287	0.24	+0.5
4,298,051	-		GFF4287	0.24	-1.7
4,298,051	-		GFF4287	0.24	+0.9
4,298,051	-		GFF4287	0.24	-0.2
4,298,051	-		GFF4287	0.24	-1.0
4,298,051	-		GFF4287	0.24	-0.5
4,298,051	-		GFF4287	0.24	-0.2
4,298,051	-		GFF4287	0.24	+0.3
4,298,051	-		GFF4287	0.24	-0.3
4,298,051	-		GFF4287	0.24	-0.2
4,298,051	-		GFF4287	0.24	-2.5
4,298,051	-		GFF4287	0.24	-0.7
4,298,051	-		GFF4287	0.24	-0.1
4,298,051	-		GFF4287	0.24	+0.4
4,298,051	-		GFF4287	0.24	+0.2
4,298,051	-		GFF4287	0.24	+0.7
4,298,051	-		GFF4287	0.24	+0.1
4,298,051	-		GFF4287	0.24	-0.5
4,298,051	-		GFF4287	0.24	-1.5
4,298,051	-		GFF4287	0.24	+1.0
4,298,051	-		GFF4287	0.24	-1.4
4,298,051	-		GFF4287	0.24	+0.5
4,298,051	-		GFF4287	0.24	-1.4
4,298,051	-		GFF4287	0.24	-1.4
4,298,051	-		GFF4287	0.24	-0.1
4,298,051	-		GFF4287	0.24	-0.7
4,298,051	-		GFF4287	0.24	+1.4
4,298,051	-		GFF4287	0.24	-0.5
4,298,051	-		GFF4287	0.24	+0.8
4,298,053	+		GFF4287	0.24	+0.2
4,298,053	+		GFF4287	0.24	-0.2
4,298,059	+		GFF4287	0.25	-0.5
4,298,059	-		GFF4287	0.25	+0.5
4,298,061	-		GFF4287	0.25	+0.1
4,298,061	-		GFF4287	0.25	-0.6
4,298,061	-		GFF4287	0.25	+0.8
4,298,064	-		GFF4287	0.26	+0.2
4,298,069	-		GFF4287	0.27	-1.9
4,298,071	+		GFF4287	0.27	+1.0
4,298,079	-		GFF4287	0.28	+0.2
4,298,090	+		GFF4287	0.30	+0.2
4,298,116	+		GFF4287	0.34	+0.7
4,298,123	-		GFF4287	0.35	-0.2
4,298,145	+		GFF4287	0.39	-0.3
4,298,146	-		GFF4287	0.39	+0.8
4,298,157	+		GFF4287	0.41	-0.9
4,298,165	-		GFF4287	0.42	+1.6
4,298,176	+		GFF4287	0.44	-1.4
4,298,176	+		GFF4287	0.44	-1.8
4,298,181	+		GFF4287	0.44	+0.6
4,298,184	-		GFF4287	0.45	-2.6
4,298,184	-		GFF4287	0.45	+0.0
4,298,184	-		GFF4287	0.45	-0.8
4,298,184	-		GFF4287	0.45	+0.2
4,298,186	+		GFF4287	0.45	+0.4
4,298,186	+		GFF4287	0.45	-0.7
4,298,186	+		GFF4287	0.45	+0.6
4,298,194	-		GFF4287	0.46	-1.0
4,298,194	-		GFF4287	0.46	-0.2
4,298,194	-		GFF4287	0.46	-0.1
4,298,194	-		GFF4287	0.46	-0.2
4,298,194	-		GFF4287	0.46	-1.3
4,298,194	-		GFF4287	0.46	-1.3
4,298,194	-		GFF4287	0.46	-2.2
4,298,216	-		GFF4287	0.50	-0.1
4,298,218	+		GFF4287	0.50	-0.6
4,298,226	-		GFF4287	0.52	-2.0
4,298,239	-		GFF4287	0.54	-0.4
4,298,270	-		GFF4287	0.58	+0.7
4,298,288	+		GFF4287	0.61	-0.6
4,298,288	+		GFF4287	0.61	-0.5
4,298,288	+		GFF4287	0.61	-0.5
4,298,288	+		GFF4287	0.61	-2.4
4,298,288	+		GFF4287	0.61	-0.2
4,298,288	+		GFF4287	0.61	-0.8
4,298,288	+		GFF4287	0.61	-2.2
4,298,288	+		GFF4287	0.61	+0.2
4,298,288	+		GFF4287	0.61	+0.7
4,298,288	+		GFF4287	0.61	+1.2
4,298,288	+		GFF4287	0.61	-1.1
4,298,288	+		GFF4287	0.61	-2.2
4,298,288	+		GFF4287	0.61	-0.4
4,298,288	+		GFF4287	0.61	-0.1
4,298,288	+		GFF4287	0.61	-0.3
4,298,288	+		GFF4287	0.61	-0.1
4,298,288	+		GFF4287	0.61	+0.0
4,298,288	+		GFF4287	0.61	+1.1
4,298,288	+		GFF4287	0.61	+0.9
4,298,293	+		GFF4287	0.62	+0.4
4,298,296	-		GFF4287	0.63	-0.2
4,298,296	-		GFF4287	0.63	-0.9
4,298,296	-		GFF4287	0.63	+0.6
4,298,296	-		GFF4287	0.63	-0.8
4,298,296	-		GFF4287	0.63	+0.8
4,298,296	-		GFF4287	0.63	-0.1
4,298,296	-		GFF4287	0.63	+0.2
4,298,296	-		GFF4287	0.63	+1.5
4,298,296	-		GFF4287	0.63	-0.4
4,298,296	-		GFF4287	0.63	-0.8
4,298,296	-		GFF4287	0.63	-0.9
4,298,296	-		GFF4287	0.63	+0.3
4,298,296	-		GFF4287	0.63	-0.0
4,298,296	-		GFF4287	0.63	-0.7
4,298,298	+		GFF4287	0.63	+0.6
4,298,301	-		GFF4287	0.63	-1.5
4,298,304	+		GFF4287	0.64	-0.0
4,298,347	+		GFF4287	0.71	-1.5
4,298,347	+		GFF4287	0.71	+0.7
4,298,354	-		GFF4287	0.72	-0.5
4,298,355	-		GFF4287	0.72	-0.5
4,298,355	-		GFF4287	0.72	+0.4
4,298,355	-		GFF4287	0.72	+0.2
4,298,355	-		GFF4287	0.72	+0.5
4,298,355	-		GFF4287	0.72	-0.9
4,298,374	-		GFF4287	0.75	+0.1
4,298,388	-		GFF4287	0.77	+0.3
4,298,392	-		GFF4287	0.78	+1.0
4,298,425	-		GFF4287	0.83	+0.3
4,298,425	-		GFF4287	0.83	+0.6
4,298,457	+		GFF4287	0.88	+0.9
4,298,458	-		GFF4287	0.88	+0.2
4,298,458	-		GFF4287	0.88	-0.3
4,298,473	+				-1.4
4,298,487	+				+0.5
4,298,499	+				-0.5
4,298,499	+				-2.8
4,298,507	-				-1.7
4,298,507	-				-2.8
4,298,507	-				-0.1
4,298,540	+				-2.0
4,298,540	+				-1.1
4,298,548	-				-0.5
4,298,553	-				+1.2
4,298,553	-				+0.3
4,298,553	-				+0.2
4,298,555	+				-0.4
4,298,557	-				+1.0
4,298,576	-				-0.9
4,298,595	+		GFF4288	0.12	-0.2
4,298,595	+		GFF4288	0.12	-2.2
4,298,609	-		GFF4288	0.15	+0.4
4,298,616	+		GFF4288	0.16	+1.2
4,298,616	+		GFF4288	0.16	+1.3
4,298,616	+		GFF4288	0.16	-2.1
4,298,616	+		GFF4288	0.16	+0.1
4,298,616	+		GFF4288	0.16	+0.2
4,298,616	+		GFF4288	0.16	-0.8
4,298,616	+		GFF4288	0.16	-1.4
4,298,624	-		GFF4288	0.18	-0.4
4,298,624	-		GFF4288	0.18	+0.0
4,298,624	-		GFF4288	0.18	-1.6
4,298,624	-		GFF4288	0.18	-0.1
4,298,624	-		GFF4288	0.18	-0.4
4,298,624	-		GFF4288	0.18	+0.5
4,298,624	-		GFF4288	0.18	-1.2
4,298,642	+		GFF4288	0.21	-0.3
4,298,650	-		GFF4288	0.23	-1.6
4,298,674	+		GFF4288	0.27	+0.7
4,298,674	+		GFF4288	0.27	-0.1
4,298,674	+		GFF4288	0.27	+0.7
4,298,682	-		GFF4288	0.29	+0.3
4,298,682	-		GFF4288	0.29	-1.6
4,298,682	-		GFF4288	0.29	-2.1
4,298,682	-		GFF4288	0.29	+0.3
4,298,697	-		GFF4288	0.32	+0.3
4,298,701	-		GFF4288	0.32	+1.1
4,298,704	+		GFF4288	0.33	-0.3
4,298,712	-		GFF4288	0.34	-0.1
4,298,712	-		GFF4288	0.34	-0.1
4,298,712	-		GFF4288	0.34	+1.0
4,298,716	+		GFF4288	0.35	+0.8
4,298,716	+		GFF4288	0.35	-0.9
4,298,748	+		GFF4288	0.41	+0.0
4,298,748	+		GFF4288	0.41	+0.9
4,298,748	+		GFF4288	0.41	-1.2
4,298,749	-		GFF4288	0.42	+0.1
4,298,756	-		GFF4288	0.43	+0.9
4,298,756	-		GFF4288	0.43	-1.1
4,298,793	-		GFF4288	0.50	+0.8
4,298,797	+		GFF4288	0.51	-2.4
4,298,805	-		GFF4288	0.52	-0.6
4,298,839	+		GFF4288	0.59	-0.4
4,298,839	+		GFF4288	0.59	+1.1
4,298,847	-		GFF4288	0.60	+0.6
4,298,856	+		GFF4288	0.62	-0.0
4,298,856	+		GFF4288	0.62	+0.4
4,298,869	-		GFF4288	0.65	+0.1
4,298,879	-		GFF4288	0.66	-2.1
4,298,888	+		GFF4288	0.68	-0.1
4,298,896	-		GFF4288	0.70	-0.7
4,298,896	-		GFF4288	0.70	+0.4
4,298,910	-		GFF4288	0.72	-1.9
4,298,935	-		GFF4288	0.77	+0.2
4,298,996	-		GFF4288	0.89	-0.1
4,298,996	-		GFF4288	0.89	+0.2
4,298,998	+		GFF4288	0.89	-1.4
4,299,006	-				+0.2
4,299,015	+				-2.6
4,299,020	+				+0.5
4,299,023	-				+0.4
4,299,023	-				+0.3
4,299,031	+				+0.3
4,299,072	-				-0.0
4,299,100	+				-0.9
4,299,100	+				+0.7
4,299,100	+				-1.8
4,299,135	+				-1.7
4,299,141	+				-1.5
4,299,142	+				-0.7
4,299,143	+				+0.3
4,299,151	-				-0.5
4,299,170	-				+1.0
4,299,171	+				+0.9
4,299,183	+				+0.8
4,299,183	+				-2.1
4,299,191	+				+1.2
4,299,191	+				-0.8
4,299,191	-				-0.3
4,299,191	-				-0.9
4,299,199	-				+1.1
4,299,268	+				+0.9
4,299,268	-				+2.1
4,299,268	-				+0.8
4,299,276	-				+0.6
4,299,276	-				-0.4
4,299,276	-				-1.3
4,299,279	+				+0.5
4,299,279	+				-0.8
4,299,296	+				+1.3
4,299,301	+				+1.6
4,299,301	+				+0.6
4,299,301	+				+0.4
4,299,304	-				-1.1
4,299,307	-				-0.0
4,299,309	-				+0.1
4,299,309	-				-0.2
4,299,309	-				-1.5
4,299,309	-				+0.3
4,299,309	-				-0.6
4,299,309	-				-0.8
4,299,309	-				-1.2
4,299,309	-				+0.9
4,299,311	+				+0.5
4,299,311	+				-2.0
4,299,319	-				-0.1
4,299,321	-				+1.6
4,299,326	+				-0.4
4,299,326	-				+0.3
4,299,334	-				-0.8
4,299,334	-				-0.2
4,299,343	+				-0.9
4,299,343	+				+0.5
4,299,343	+				+0.4
4,299,344	+				-1.3
4,299,344	+				-0.7
4,299,344	+				+0.9
4,299,344	+				+0.9
4,299,344	+				-1.1
4,299,344	+				-2.5
4,299,344	+				-1.6
4,299,349	+				-1.0
4,299,351	-				-0.4
4,299,351	-				-0.4
4,299,351	-				-1.1
4,299,351	-				-1.5
4,299,351	-				-1.6
4,299,351	-				-1.8
4,299,351	-				-0.4
4,299,351	-				-2.2
4,299,352	-				+0.3
4,299,352	-				-1.6
4,299,352	-				-1.6
4,299,352	-				-0.3
4,299,352	-				+0.6
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