Strain Fitness in Sphingobium sp. HT1-2 around GFF4255

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,271,269	+				-0.1
4,271,286	+				+1.4
4,271,297	+				-0.5
4,271,300	-				-0.2
4,271,315	+				-1.2
4,271,322	-				-1.3
4,271,327	-				+0.5
4,271,340	-				+1.3
4,271,345	+				+0.1
4,271,355	+		GFF4253	0.12	-1.6
4,271,365	+		GFF4253	0.14	-0.3
4,271,365	+		GFF4253	0.14	+0.7
4,271,365	+		GFF4253	0.14	+0.7
4,271,365	+		GFF4253	0.14	-0.6
4,271,365	+		GFF4253	0.14	+0.1
4,271,365	+		GFF4253	0.14	-0.6
4,271,373	-		GFF4253	0.15	-0.6
4,271,373	-		GFF4253	0.15	-1.3
4,271,376	+		GFF4253	0.15	+1.2
4,271,403	+		GFF4253	0.20	+1.0
4,271,440	+		GFF4253	0.27	-0.1
4,271,450	-		GFF4253	0.29	-0.4
4,271,452	+		GFF4253	0.29	-1.7
4,271,460	-		GFF4253	0.31	+0.2
4,271,468	-		GFF4253	0.32	-1.9
4,271,521	-		GFF4253	0.42	-0.6
4,271,550	+		GFF4253	0.47	-1.6
4,271,550	+		GFF4253	0.47	-1.7
4,271,550	+		GFF4253	0.47	+0.5
4,271,558	-		GFF4253	0.48	-1.5
4,271,589	-		GFF4253	0.54	-1.3
4,271,603	+		GFF4253	0.56	+0.2
4,271,611	-		GFF4253	0.58	+0.1
4,271,611	-		GFF4253	0.58	-0.8
4,271,611	-		GFF4253	0.58	-1.3
4,271,622	+		GFF4253	0.60	-0.3
4,271,623	-		GFF4253	0.60	-0.4
4,271,629	+		GFF4253	0.61	+0.1
4,271,637	-		GFF4253	0.63	-0.8
4,271,644	+		GFF4253	0.64	+0.1
4,271,646	+		GFF4253	0.64	-2.7
4,271,654	-		GFF4253	0.66	-0.3
4,271,680	-		GFF4253	0.70	-0.5
4,271,682	+		GFF4253	0.71	+0.1
4,271,697	-		GFF4253	0.73	-0.1
4,271,709	-		GFF4253	0.75	-1.5
4,271,711	+		GFF4253	0.76	+0.8
4,271,719	+		GFF4253	0.77	+0.2
4,271,719	-		GFF4253	0.77	-0.6
4,271,719	-		GFF4253	0.77	+0.1
4,271,727	-		GFF4253	0.79	+0.3
4,271,729	-		GFF4253	0.79	-1.2
4,271,749	+		GFF4253	0.83	+0.1
4,271,775	+		GFF4253	0.87	+0.5
4,271,781	-		GFF4253	0.88	+0.9
4,271,785	-		GFF4253	0.89	-0.2
4,271,787	+		GFF4253	0.90	-0.9
4,271,787	+		GFF4253	0.90	+0.2
4,271,787	+		GFF4253	0.90	+0.3
4,271,787	+		GFF4253	0.90	-0.4
4,271,795	-				+0.8
4,271,795	-				-0.1
4,271,795	-				-1.9
4,271,797	+				-1.9
4,271,805	-				+0.3
4,271,805	-				-0.7
4,271,821	+				-1.2
4,271,837	+				+0.3
4,271,837	+				+1.4
4,271,849	+				-0.0
4,271,862	+				-0.1
4,271,862	-				-1.0
4,271,865	+				-0.4
4,271,870	+				+1.6
4,271,872	+				-0.0
4,271,901	-				+0.9
4,271,917	+				+0.4
4,271,950	-				-1.3
4,271,956	+				-0.1
4,271,957	-				-0.2
4,271,993	+		GFF4254	0.16	+0.3
4,271,993	+		GFF4254	0.16	+0.6
4,271,993	+		GFF4254	0.16	-0.8
4,271,993	+		GFF4254	0.16	-2.1
4,271,993	+		GFF4254	0.16	-1.0
4,271,993	+		GFF4254	0.16	+1.3
4,271,993	+		GFF4254	0.16	-1.1
4,271,993	+		GFF4254	0.16	+0.1
4,271,993	+		GFF4254	0.16	+0.5
4,271,993	+		GFF4254	0.16	-1.4
4,271,993	+		GFF4254	0.16	-0.0
4,271,993	+		GFF4254	0.16	-0.5
4,271,993	+		GFF4254	0.16	+0.2
4,271,993	+		GFF4254	0.16	+0.1
4,271,993	+		GFF4254	0.16	-1.1
4,271,993	+		GFF4254	0.16	-0.4
4,271,993	+		GFF4254	0.16	+0.6
4,271,993	+		GFF4254	0.16	+0.4
4,271,993	+		GFF4254	0.16	-1.9
4,271,993	+		GFF4254	0.16	-0.1
4,271,993	+		GFF4254	0.16	-1.0
4,271,993	+		GFF4254	0.16	-0.2
4,271,998	+		GFF4254	0.18	+0.3
4,271,998	+		GFF4254	0.18	+0.9
4,272,001	-		GFF4254	0.19	-0.2
4,272,001	-		GFF4254	0.19	+0.7
4,272,001	-		GFF4254	0.19	-0.6
4,272,001	-		GFF4254	0.19	+0.7
4,272,001	-		GFF4254	0.19	+0.3
4,272,001	-		GFF4254	0.19	-0.9
4,272,001	-		GFF4254	0.19	-0.3
4,272,001	-		GFF4254	0.19	+1.0
4,272,001	-		GFF4254	0.19	-1.2
4,272,001	-		GFF4254	0.19	-1.0
4,272,001	-		GFF4254	0.19	+0.3
4,272,001	-		GFF4254	0.19	+0.1
4,272,001	-		GFF4254	0.19	-1.4
4,272,001	-		GFF4254	0.19	-0.5
4,272,001	-		GFF4254	0.19	+0.2
4,272,001	-		GFF4254	0.19	-1.5
4,272,001	-		GFF4254	0.19	+1.5
4,272,001	-		GFF4254	0.19	+0.3
4,272,001	-		GFF4254	0.19	+0.2
4,272,001	-		GFF4254	0.19	-0.6
4,272,003	+		GFF4254	0.20	+0.1
4,272,034	-		GFF4254	0.31	-0.5
4,272,059	-		GFF4254	0.39	-0.7
4,272,087	-		GFF4254	0.49	-0.9
4,272,092	-		GFF4254	0.51	+1.2
4,272,092	-		GFF4254	0.51	-2.0
4,272,092	-		GFF4254	0.51	+0.2
4,272,106	-		GFF4254	0.56	+1.1
4,272,111	+		GFF4254	0.58	+1.0
4,272,111	+		GFF4254	0.58	+0.3
4,272,111	+		GFF4254	0.58	-0.4
4,272,111	+		GFF4254	0.58	-2.3
4,272,111	+		GFF4254	0.58	-1.0
4,272,119	-		GFF4254	0.60	+0.0
4,272,119	-		GFF4254	0.60	+0.9
4,272,132	+		GFF4254	0.65	+0.2
4,272,132	+		GFF4254	0.65	-0.3
4,272,132	+		GFF4254	0.65	-0.9
4,272,132	+		GFF4254	0.65	+0.6
4,272,140	-		GFF4254	0.68	+0.1
4,272,143	-		GFF4254	0.69	+0.5
4,272,146	+		GFF4254	0.70	-0.6
4,272,153	-		GFF4254	0.72	-1.1
4,272,155	-		GFF4254	0.73	+1.4
4,272,170	-		GFF4254	0.78	+0.1
4,272,201	+		GFF4254	0.89	-0.7
4,272,201	+		GFF4254	0.89	+0.6
4,272,220	+				+0.8
4,272,220	+				+0.3
4,272,220	+				-0.9
4,272,224	-				+1.1
4,272,225	+				-1.1
4,272,230	+				+1.3
4,272,233	-				-0.0
4,272,233	-				-0.4
4,272,234	-				-1.9
4,272,235	+				-0.4
4,272,241	+				-0.3
4,272,245	+				-0.3
4,272,250	+				-0.1
4,272,250	+				-0.4
4,272,250	+				-1.2
4,272,250	+				+0.4
4,272,250	-				-1.2
4,272,255	+				+0.7
4,272,257	+				-0.0
4,272,257	+				-0.9
4,272,257	+				+0.5
4,272,258	-				+0.5
4,272,263	-				+1.4
4,272,263	-				-0.8
4,272,265	-				-0.0
4,272,296	+				+1.0
4,272,299	+				+0.3
4,272,317	-		GFF4255	0.11	+0.7
4,272,322	-		GFF4255	0.12	-0.7
4,272,324	+		GFF4255	0.12	-1.5
4,272,324	+		GFF4255	0.12	-1.6
4,272,324	+		GFF4255	0.12	-1.5
4,272,324	+		GFF4255	0.12	-1.7
4,272,324	+		GFF4255	0.12	-2.7
4,272,332	-		GFF4255	0.13	-0.8
4,272,332	-		GFF4255	0.13	+0.4
4,272,345	+		GFF4255	0.16	-2.2
4,272,353	-		GFF4255	0.17	-0.8
4,272,353	-		GFF4255	0.17	-1.3
4,272,381	+		GFF4255	0.23	-1.3
4,272,391	-		GFF4255	0.25	+2.1
4,272,402	+		GFF4255	0.27	+0.6
4,272,410	-		GFF4255	0.28	+1.2
4,272,413	+		GFF4255	0.29	-1.6
4,272,421	-		GFF4255	0.30	-1.2
4,272,421	-		GFF4255	0.30	-2.0
4,272,426	+		GFF4255	0.31	+0.3
4,272,436	-		GFF4255	0.33	+0.4
4,272,436	-		GFF4255	0.33	+0.9
4,272,462	+		GFF4255	0.38	-0.7
4,272,469	-		GFF4255	0.39	+0.7
4,272,474	+		GFF4255	0.40	-0.1
4,272,475	-		GFF4255	0.40	-0.4
4,272,475	-		GFF4255	0.40	-0.1
4,272,475	-		GFF4255	0.40	-0.5
4,272,480	-		GFF4255	0.41	-0.1
4,272,482	-		GFF4255	0.42	+0.9
4,272,495	+		GFF4255	0.44	-1.3
4,272,513	-		GFF4255	0.47	+0.1
4,272,517	+		GFF4255	0.48	-2.1
4,272,525	-		GFF4255	0.50	-0.2
4,272,539	-		GFF4255	0.52	+0.1
4,272,554	-		GFF4255	0.55	-0.2
4,272,554	-		GFF4255	0.55	-1.5
4,272,556	+		GFF4255	0.55	+0.6
4,272,559	-		GFF4255	0.56	-0.4
4,272,559	-		GFF4255	0.56	-1.8
4,272,564	-		GFF4255	0.57	+0.2
4,272,564	-		GFF4255	0.57	-0.6
4,272,568	-		GFF4255	0.58	+0.2
4,272,572	+		GFF4255	0.58	-0.0
4,272,572	+		GFF4255	0.58	+0.6
4,272,572	+		GFF4255	0.58	-0.1
4,272,572	+		GFF4255	0.58	+1.4
4,272,577	+		GFF4255	0.59	-1.1
4,272,580	+		GFF4255	0.60	+0.4
4,272,580	-		GFF4255	0.60	-0.8
4,272,585	-		GFF4255	0.61	+0.0
4,272,599	+		GFF4255	0.63	+1.0
4,272,600	+		GFF4255	0.64	-0.6
4,272,601	-		GFF4255	0.64	+0.2
4,272,606	+		GFF4255	0.65	+0.7
4,272,610	+		GFF4255	0.66	+0.6
4,272,610	-		GFF4255	0.66	-0.8
4,272,641	+		GFF4255	0.71	+0.1
4,272,660	-		GFF4255	0.75	-0.3
4,272,660	-		GFF4255	0.75	+0.5
4,272,668	+		GFF4255	0.76	-0.3
4,272,668	+		GFF4255	0.76	+0.8
4,272,673	+		GFF4255	0.77	+0.2
4,272,673	+		GFF4255	0.77	-0.3
4,272,681	-		GFF4255	0.79	-1.5
4,272,698	+		GFF4255	0.82	-0.5
4,272,698	+		GFF4255	0.82	+1.2
4,272,708	+		GFF4255	0.84	-0.9
4,272,708	+		GFF4255	0.84	-1.9
4,272,716	-		GFF4255	0.85	-0.2
4,272,718	+		GFF4255	0.86	-2.0
4,272,748	+				-0.2
4,272,770	-				-0.1
4,272,788	+				-0.5
4,272,788	+				-1.0
4,272,802	-				-0.1
4,272,802	-				-0.0
4,272,802	-				-1.8
4,272,802	-				-0.7
4,272,845	+				-0.6
4,272,847	+				-0.5
4,272,849	+				+0.5
4,272,879	-				-0.0
4,272,883	+				-0.8
4,272,891	-				-1.0
4,272,891	-				-1.6
4,272,893	+				-1.5
4,272,895	+				-1.1
4,272,902	+				-0.3
4,272,902	+				-1.0
4,272,902	+				+0.6
4,272,903	+				-0.2
4,272,903	+				-0.6
4,272,903	+				-0.7
4,272,903	+				-1.3
4,272,910	+				+1.5
4,272,910	-				+0.4
4,272,910	-				-0.5
4,272,910	-				+0.7
4,272,911	-				-1.0
4,272,911	-				-0.2
4,272,911	-				+0.7
4,272,911	-				-1.1
4,272,929	+				-0.5
4,272,945	-				+0.6
4,272,956	+				-0.1
4,272,964	-				+0.6
4,272,964	-				+0.4
4,272,964	-				-0.2
4,272,990	-		GFF4256	0.15	-0.3
4,272,995	-		GFF4256	0.16	-0.7
4,272,999	+		GFF4256	0.16	-0.9
4,273,038	+		GFF4256	0.24	-0.1
4,273,038	+		GFF4256	0.24	-2.6
4,273,038	-		GFF4256	0.24	+0.9
4,273,068	+		GFF4256	0.30	+0.3
4,273,069	+		GFF4256	0.30	-0.5
4,273,069	+		GFF4256	0.30	-0.4
4,273,069	+		GFF4256	0.30	+0.2
4,273,069	+		GFF4256	0.30	+0.2
4,273,069	+		GFF4256	0.30	-0.1
4,273,069	+		GFF4256	0.30	-1.6
4,273,069	+		GFF4256	0.30	-0.0
4,273,069	+		GFF4256	0.30	-1.5
4,273,069	+		GFF4256	0.30	-0.7
4,273,077	-		GFF4256	0.31	-1.8
4,273,077	-		GFF4256	0.31	-1.2
4,273,093	+		GFF4256	0.34	-1.6
4,273,093	+		GFF4256	0.34	+0.7
4,273,093	+		GFF4256	0.34	+0.5
4,273,095	+		GFF4256	0.35	-0.1
4,273,096	-		GFF4256	0.35	-0.6
4,273,128	+		GFF4256	0.41	-2.0
4,273,143	+		GFF4256	0.44	-1.3
4,273,143	+		GFF4256	0.44	+0.0
4,273,143	+		GFF4256	0.44	+0.2
4,273,143	+		GFF4256	0.44	+0.3
4,273,143	+		GFF4256	0.44	-1.5
4,273,143	+		GFF4256	0.44	-0.5
4,273,151	-		GFF4256	0.45	-2.5
4,273,151	-		GFF4256	0.45	-1.1
4,273,151	-		GFF4256	0.45	+0.6
4,273,161	-		GFF4256	0.47	+0.1
4,273,177	-		GFF4256	0.50	-0.3
4,273,197	-		GFF4256	0.54	-1.5
4,273,215	-		GFF4256	0.58	+0.9
4,273,227	+		GFF4256	0.60	+0.5
4,273,243	-		GFF4256	0.63	-0.7
4,273,259	+		GFF4256	0.66	-0.0
4,273,259	+		GFF4256	0.66	-0.9
4,273,278	+		GFF4256	0.70	+0.8
4,273,278	+		GFF4256	0.70	-0.1
4,273,278	+		GFF4256	0.70	-1.1
4,273,286	+		GFF4256	0.71	+0.0
4,273,286	-		GFF4256	0.71	-0.8
4,273,315	+		GFF4256	0.77	-1.3
4,273,315	+		GFF4256	0.77	+0.1
4,273,315	+		GFF4256	0.77	+0.3
4,273,315	+		GFF4256	0.77	-0.3
4,273,315	+		GFF4256	0.77	-0.9
4,273,315	+		GFF4256	0.77	+0.5
4,273,321	+		GFF4256	0.78	-1.8
4,273,323	-		GFF4256	0.78	-0.0
4,273,323	-		GFF4256	0.78	+0.1
4,273,323	-		GFF4256	0.78	+1.5
4,273,344	-		GFF4256	0.82	-0.5
4,273,350	-		GFF4256	0.83	+0.3
4,273,352	+		GFF4256	0.84	-0.1
4,273,365	-		GFF4256	0.86	-1.3
4,273,406	+				-0.1
4,273,406	+				+0.2
4,273,411	+				+0.4
4,273,411	+				-1.5
4,273,411	+				-0.6
4,273,411	+				-0.1
4,273,411	+				-0.1
4,273,411	+				+0.1
4,273,411	+				-0.8
4,273,411	+				+0.5
4,273,411	+				-0.1
4,273,411	+				-0.8
4,273,411	+				-0.5
4,273,411	+				+0.0
4,273,411	+				-0.2
4,273,411	+				+0.1
4,273,411	+				-0.9
4,273,411	+				-0.6
4,273,411	+				-0.0
4,273,411	+				+1.1
4,273,411	+				+0.5
4,273,411	+				-1.4
4,273,411	+				+0.4
4,273,411	+				+0.2
4,273,411	+				-0.5
4,273,411	+				+1.5
4,273,411	+				+0.3
4,273,411	+				+0.3
4,273,411	+				-0.9
4,273,411	+				-0.5
4,273,412	-				-0.6
4,273,414	-				+1.0
4,273,414	-				-0.0
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