Strain Fitness in Sphingobium sp. HT1-2 around GFF4203

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,225,076	+				-0.3
4,225,076	+				+0.0
4,225,084	-				+0.6
4,225,084	-				-1.6
4,225,101	+				+1.3
4,225,101	+				-1.9
4,225,109	-				+1.2
4,225,109	-				-0.4
4,225,170	-				-0.6
4,225,195	+				-0.1
4,225,214	+				+0.7
4,225,234	-				+0.6
4,225,259	-				+0.5
4,225,270	+				-0.4
4,225,270	+				+1.9
4,225,270	+				+0.3
4,225,270	+				-0.0
4,225,278	-				-1.3
4,225,278	-				-1.3
4,225,278	-				-0.3
4,225,278	-				+0.6
4,225,303	+				-0.1
4,225,330	+		GFF4202	0.13	-2.7
4,225,343	+		GFF4202	0.14	-1.2
4,225,348	-		GFF4202	0.15	-0.4
4,225,385	+		GFF4202	0.19	-1.9
4,225,385	+		GFF4202	0.19	-0.4
4,225,385	+		GFF4202	0.19	+0.5
4,225,385	+		GFF4202	0.19	-0.2
4,225,385	+		GFF4202	0.19	+0.8
4,225,385	+		GFF4202	0.19	+0.1
4,225,385	+		GFF4202	0.19	-1.6
4,225,385	+		GFF4202	0.19	-0.3
4,225,385	+		GFF4202	0.19	+0.4
4,225,385	+		GFF4202	0.19	+0.4
4,225,393	-		GFF4202	0.20	-1.9
4,225,393	-		GFF4202	0.20	-0.5
4,225,393	-		GFF4202	0.20	-0.6
4,225,393	-		GFF4202	0.20	+0.9
4,225,393	-		GFF4202	0.20	-2.0
4,225,393	-		GFF4202	0.20	-0.5
4,225,393	-		GFF4202	0.20	-0.2
4,225,407	+		GFF4202	0.22	-1.7
4,225,419	+		GFF4202	0.24	+0.0
4,225,419	+		GFF4202	0.24	+1.4
4,225,493	-		GFF4202	0.33	-0.2
4,225,569	-		GFF4202	0.42	-0.7
4,225,592	+		GFF4202	0.45	+0.6
4,225,618	+		GFF4202	0.48	-1.4
4,225,619	+		GFF4202	0.49	-1.0
4,225,621	-		GFF4202	0.49	+0.4
4,225,621	-		GFF4202	0.49	-0.0
4,225,636	-		GFF4202	0.51	+0.1
4,225,646	+		GFF4202	0.52	+0.3
4,225,646	+		GFF4202	0.52	+0.2
4,225,646	+		GFF4202	0.52	+0.5
4,225,646	+		GFF4202	0.52	+1.1
4,225,646	+		GFF4202	0.52	-0.0
4,225,646	+		GFF4202	0.52	+0.3
4,225,646	+		GFF4202	0.52	-0.3
4,225,654	-		GFF4202	0.53	-0.4
4,225,654	-		GFF4202	0.53	+0.7
4,225,654	-		GFF4202	0.53	+1.0
4,225,657	+		GFF4202	0.53	+0.6
4,225,707	+		GFF4202	0.59	+0.2
4,225,711	+		GFF4202	0.60	-1.6
4,225,711	+		GFF4202	0.60	+0.3
4,225,719	-		GFF4202	0.61	-2.0
4,225,719	-		GFF4202	0.61	+0.1
4,225,719	-		GFF4202	0.61	+0.0
4,225,736	-		GFF4202	0.63	-1.4
4,225,736	-		GFF4202	0.63	+0.4
4,225,741	+		GFF4202	0.64	-0.3
4,225,753	+		GFF4202	0.65	-2.6
4,225,762	+		GFF4202	0.66	+0.2
4,225,762	+		GFF4202	0.66	+0.6
4,225,762	+		GFF4202	0.66	-0.1
4,225,762	+		GFF4202	0.66	-0.6
4,225,762	+		GFF4202	0.66	+0.6
4,225,770	-		GFF4202	0.67	-2.8
4,225,770	-		GFF4202	0.67	-0.6
4,225,785	+		GFF4202	0.69	-0.9
4,225,785	+		GFF4202	0.69	+0.9
4,225,785	+		GFF4202	0.69	+0.3
4,225,792	+		GFF4202	0.70	-0.9
4,225,793	-		GFF4202	0.70	+0.2
4,225,793	-		GFF4202	0.70	-1.2
4,225,793	-		GFF4202	0.70	+1.3
4,225,793	-		GFF4202	0.70	+0.3
4,225,793	-		GFF4202	0.70	+0.3
4,225,805	+		GFF4202	0.72	+0.1
4,225,815	+		GFF4202	0.73	-1.6
4,225,815	+		GFF4202	0.73	-0.6
4,225,815	+		GFF4202	0.73	-1.9
4,225,825	+		GFF4202	0.74	-1.0
4,225,835	+		GFF4202	0.75	-1.2
4,225,843	-		GFF4202	0.76	+1.0
4,225,845	+		GFF4202	0.77	+0.1
4,225,863	-		GFF4202	0.79	-0.3
4,225,863	-		GFF4202	0.79	+1.5
4,225,884	+		GFF4202	0.81	-0.1
4,225,892	-		GFF4202	0.82	+0.2
4,225,892	-		GFF4202	0.82	-0.9
4,225,940	-		GFF4202	0.88	+0.1
4,225,940	-		GFF4202	0.88	-1.8
4,225,955	-				+0.2
4,225,965	+				-0.3
4,225,972	+				+0.1
4,225,992	+				-0.0
4,225,994	+				+0.3
4,226,026	-				+0.6
4,226,042	-				+0.6
4,226,043	+				+0.1
4,226,049	-				+0.2
4,226,072	+				+0.1
4,226,072	+				-0.6
4,226,077	-				-0.0
4,226,078	+				-0.0
4,226,107	+				-1.8
4,226,130	+				-0.2
4,226,130	+				-0.7
4,226,130	+				-2.5
4,226,130	+				-0.6
4,226,130	+				-2.2
4,226,130	+				+1.0
4,226,130	+				-1.5
4,226,138	-				-0.4
4,226,151	+		GFF4203	0.10	-1.1
4,226,159	-		GFF4203	0.11	-1.7
4,226,161	-		GFF4203	0.11	-1.2
4,226,161	-		GFF4203	0.11	+0.9
4,226,183	+		GFF4203	0.13	+1.5
4,226,183	+		GFF4203	0.13	+0.5
4,226,183	+		GFF4203	0.13	-1.8
4,226,183	+		GFF4203	0.13	-1.7
4,226,185	-		GFF4203	0.14	-0.2
4,226,191	-		GFF4203	0.14	-1.9
4,226,191	-		GFF4203	0.14	+0.0
4,226,191	-		GFF4203	0.14	+0.3
4,226,191	-		GFF4203	0.14	+0.0
4,226,193	+		GFF4203	0.14	-2.5
4,226,193	+		GFF4203	0.14	-1.2
4,226,193	-		GFF4203	0.14	+1.1
4,226,193	-		GFF4203	0.14	+0.4
4,226,201	-		GFF4203	0.15	+0.2
4,226,206	+		GFF4203	0.15	+0.6
4,226,214	-		GFF4203	0.16	+0.4
4,226,214	-		GFF4203	0.16	+0.3
4,226,253	+		GFF4203	0.20	+0.8
4,226,266	-		GFF4203	0.21	-0.7
4,226,279	+		GFF4203	0.22	-0.6
4,226,280	+		GFF4203	0.22	-0.5
4,226,282	-		GFF4203	0.22	+0.0
4,226,282	-		GFF4203	0.22	+0.6
4,226,287	-		GFF4203	0.23	-1.1
4,226,289	+		GFF4203	0.23	+0.3
4,226,308	+		GFF4203	0.25	-1.3
4,226,308	+		GFF4203	0.25	-1.2
4,226,308	+		GFF4203	0.25	-0.7
4,226,350	-		GFF4203	0.29	+0.8
4,226,377	+		GFF4203	0.31	-1.4
4,226,377	+		GFF4203	0.31	+0.6
4,226,377	+		GFF4203	0.31	+0.2
4,226,391	+		GFF4203	0.32	-1.4
4,226,399	+		GFF4203	0.33	-2.9
4,226,401	+		GFF4203	0.33	+0.7
4,226,401	+		GFF4203	0.33	-1.6
4,226,416	-		GFF4203	0.35	-0.3
4,226,423	+		GFF4203	0.35	-0.7
4,226,427	+		GFF4203	0.36	-0.8
4,226,427	+		GFF4203	0.36	-0.9
4,226,427	+		GFF4203	0.36	-2.4
4,226,427	+		GFF4203	0.36	-2.2
4,226,427	+		GFF4203	0.36	+0.7
4,226,427	+		GFF4203	0.36	-0.4
4,226,427	+		GFF4203	0.36	-1.4
4,226,427	+		GFF4203	0.36	-0.1
4,226,427	+		GFF4203	0.36	+0.8
4,226,427	+		GFF4203	0.36	+0.3
4,226,431	-		GFF4203	0.36	-0.3
4,226,435	-		GFF4203	0.36	-1.4
4,226,435	-		GFF4203	0.36	-1.7
4,226,435	-		GFF4203	0.36	-1.2
4,226,435	-		GFF4203	0.36	+0.3
4,226,435	-		GFF4203	0.36	+0.1
4,226,435	-		GFF4203	0.36	-1.4
4,226,435	-		GFF4203	0.36	+1.0
4,226,435	-		GFF4203	0.36	-0.1
4,226,435	-		GFF4203	0.36	-0.8
4,226,435	-		GFF4203	0.36	+1.4
4,226,435	-		GFF4203	0.36	-0.4
4,226,435	-		GFF4203	0.36	+0.1
4,226,447	+		GFF4203	0.37	+0.4
4,226,448	+		GFF4203	0.38	+0.3
4,226,456	-		GFF4203	0.38	-0.2
4,226,477	+		GFF4203	0.40	-2.8
4,226,478	+		GFF4203	0.40	+1.2
4,226,478	+		GFF4203	0.40	+0.2
4,226,484	+		GFF4203	0.41	+0.2
4,226,484	+		GFF4203	0.41	-0.8
4,226,486	-		GFF4203	0.41	+0.1
4,226,494	+		GFF4203	0.42	-0.2
4,226,504	+		GFF4203	0.43	-0.4
4,226,509	+		GFF4203	0.43	+0.4
4,226,509	+		GFF4203	0.43	-0.4
4,226,509	+		GFF4203	0.43	-0.3
4,226,509	+		GFF4203	0.43	-0.5
4,226,509	+		GFF4203	0.43	-0.8
4,226,509	+		GFF4203	0.43	-0.8
4,226,509	+		GFF4203	0.43	-0.5
4,226,517	-		GFF4203	0.44	-0.8
4,226,517	-		GFF4203	0.44	+0.9
4,226,517	-		GFF4203	0.44	+0.6
4,226,517	-		GFF4203	0.44	-0.1
4,226,517	-		GFF4203	0.44	-0.6
4,226,517	-		GFF4203	0.44	+0.7
4,226,517	-		GFF4203	0.44	-1.2
4,226,517	-		GFF4203	0.44	-0.5
4,226,581	+		GFF4203	0.50	-0.5
4,226,603	+		GFF4203	0.52	-0.3
4,226,604	-		GFF4203	0.52	-0.9
4,226,622	-		GFF4203	0.53	-0.2
4,226,633	+		GFF4203	0.54	-0.1
4,226,633	-		GFF4203	0.54	-2.0
4,226,633	-		GFF4203	0.54	-0.9
4,226,637	+		GFF4203	0.55	+0.1
4,226,643	+		GFF4203	0.55	-0.1
4,226,643	+		GFF4203	0.55	-2.0
4,226,643	+		GFF4203	0.55	-1.4
4,226,648	+		GFF4203	0.56	-1.1
4,226,648	+		GFF4203	0.56	-0.4
4,226,648	+		GFF4203	0.56	+1.6
4,226,651	-		GFF4203	0.56	+1.1
4,226,651	-		GFF4203	0.56	-0.8
4,226,651	-		GFF4203	0.56	+0.8
4,226,651	-		GFF4203	0.56	-1.0
4,226,651	-		GFF4203	0.56	+0.1
4,226,651	-		GFF4203	0.56	-0.9
4,226,651	-		GFF4203	0.56	+0.7
4,226,651	-		GFF4203	0.56	+0.8
4,226,651	-		GFF4203	0.56	-1.3
4,226,651	-		GFF4203	0.56	-1.2
4,226,651	-		GFF4203	0.56	+0.3
4,226,653	+		GFF4203	0.56	+0.3
4,226,656	-		GFF4203	0.56	+1.3
4,226,658	+		GFF4203	0.57	+1.8
4,226,681	+		GFF4203	0.59	-0.7
4,226,691	+		GFF4203	0.60	-1.4
4,226,705	+		GFF4203	0.61	+0.3
4,226,713	-		GFF4203	0.62	+1.0
4,226,721	+		GFF4203	0.62	+0.2
4,226,783	-		GFF4203	0.68	-2.5
4,226,788	-		GFF4203	0.68	+0.6
4,226,791	+		GFF4203	0.69	+0.2
4,226,791	+		GFF4203	0.69	+0.4
4,226,791	+		GFF4203	0.69	+0.2
4,226,796	+		GFF4203	0.69	+0.6
4,226,796	+		GFF4203	0.69	-0.5
4,226,799	-		GFF4203	0.69	-1.3
4,226,799	-		GFF4203	0.69	-0.7
4,226,799	-		GFF4203	0.69	-2.8
4,226,804	-		GFF4203	0.70	-0.6
4,226,806	+		GFF4203	0.70	-1.5
4,226,814	-		GFF4203	0.71	-0.6
4,226,830	+		GFF4203	0.72	-1.2
4,226,853	+		GFF4203	0.74	-0.6
4,226,858	+		GFF4203	0.75	+0.2
4,226,858	+		GFF4203	0.75	+0.4
4,226,858	+		GFF4203	0.75	-0.0
4,226,858	+		GFF4203	0.75	-1.3
4,226,858	+		GFF4203	0.75	+0.0
4,226,858	+		GFF4203	0.75	+1.0
4,226,858	+		GFF4203	0.75	-3.2
4,226,858	+		GFF4203	0.75	+0.6
4,226,858	+		GFF4203	0.75	+0.7
4,226,863	+		GFF4203	0.75	-1.0
4,226,866	-		GFF4203	0.76	+0.3
4,226,866	-		GFF4203	0.76	-0.8
4,226,866	-		GFF4203	0.76	-0.5
4,226,866	-		GFF4203	0.76	-0.1
4,226,866	-		GFF4203	0.76	+0.1
4,226,866	-		GFF4203	0.76	+1.1
4,226,866	-		GFF4203	0.76	-1.3
4,226,866	-		GFF4203	0.76	-0.3
4,226,866	-		GFF4203	0.76	-0.6
4,226,866	-		GFF4203	0.76	+0.6
4,226,866	-		GFF4203	0.76	+0.6
4,226,866	-		GFF4203	0.76	-2.1
4,226,866	-		GFF4203	0.76	+0.1
4,226,884	-		GFF4203	0.77	+1.1
4,226,884	-		GFF4203	0.77	+1.5
4,226,884	-		GFF4203	0.77	+0.1
4,226,906	+		GFF4203	0.79	+1.5
4,226,906	+		GFF4203	0.79	+0.2
4,226,911	+		GFF4203	0.80	-2.3
4,226,911	+		GFF4203	0.80	-0.6
4,226,916	+		GFF4203	0.80	-0.1
4,226,919	-		GFF4203	0.80	+0.3
4,226,919	-		GFF4203	0.80	-1.4
4,226,924	-		GFF4203	0.81	-1.3
4,226,924	-		GFF4203	0.81	-0.4
4,226,932	+		GFF4203	0.82	-0.5
4,226,940	-		GFF4203	0.82	-0.0
4,226,974	+		GFF4203	0.85	+1.5
4,226,974	+		GFF4203	0.85	-0.5
4,226,982	-		GFF4203	0.86	+0.8
4,226,982	-		GFF4203	0.86	+0.5
4,226,982	-		GFF4203	0.86	-1.1
4,226,987	+		GFF4203	0.87	+0.5
4,226,995	-		GFF4203	0.87	-0.1
4,226,995	-		GFF4203	0.87	-3.1
4,227,010	-		GFF4203	0.89	+0.2
4,227,010	-		GFF4203	0.89	-0.1
4,227,020	-		GFF4203	0.90	+0.4
4,227,047	-				+1.8
4,227,051	-				-2.1
4,227,051	-				-1.3
4,227,067	-				+0.1
4,227,069	-				-1.9
4,227,095	-				-0.6
4,227,102	+				-0.7
4,227,102	+				+0.3
4,227,102	+				-0.0
4,227,110	-				-0.2
4,227,110	-				-0.5
4,227,110	-				+0.4
4,227,110	-				+0.3
4,227,110	-				-1.8
4,227,110	-				-0.2
4,227,110	-				-1.3
4,227,110	-				-0.1
4,227,147	-				+1.3
4,227,147	-				-0.3
4,227,173	-				-1.4
4,227,180	+				-0.9
4,227,180	+				-1.3
4,227,187	-				-0.4
4,227,188	-				-0.4
4,227,218	+				-2.3
4,227,218	+				+0.9
4,227,218	+				-0.5
4,227,221	-				-1.6
4,227,221	-				-1.4
4,227,226	-				-0.4
4,227,237	+		GFF4204	0.10	+0.3
4,227,242	+		GFF4204	0.11	+0.7
4,227,242	+		GFF4204	0.11	+0.6
4,227,245	-		GFF4204	0.12	-1.0
4,227,250	-		GFF4204	0.12	+0.0
4,227,260	-		GFF4204	0.14	+0.0
4,227,282	+		GFF4204	0.18	-1.9
4,227,304	+		GFF4204	0.22	-1.7
4,227,361	-		GFF4204	0.33	-0.3
4,227,384	+		GFF4204	0.37	-0.4
4,227,391	+		GFF4204	0.38	-0.1
4,227,392	-		GFF4204	0.38	-0.2
4,227,409	-		GFF4204	0.42	+0.8
4,227,419	+		GFF4204	0.43	+0.6
4,227,440	-		GFF4204	0.47	+0.8
4,227,501	+		GFF4204	0.58	+0.9
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4,227,671	-		GFF4204	0.90	-1.4
4,227,725	+				+0.1
4,227,725	+				-2.4
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4,227,733	-				-0.9
4,227,733	-				-1.3
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4,227,766	+				-2.1
4,227,766	+				-2.4
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4,227,774	-				-1.9
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4,227,774	-				-1.4
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4,227,775	+				-2.3
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