Strain Fitness in Sphingobium sp. HT1-2 around GFF4190

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,208,408	+				-1.8
4,208,408	+				-2.1
4,208,408	+				+0.4
4,208,416	-				-0.8
4,208,416	-				-1.3
4,208,416	-				+0.4
4,208,416	-				-0.4
4,208,463	+		GFF4189	0.12	-1.7
4,208,463	+		GFF4189	0.12	-0.5
4,208,463	+		GFF4189	0.12	+0.1
4,208,471	-		GFF4189	0.13	-1.5
4,208,471	-		GFF4189	0.13	+1.5
4,208,471	-		GFF4189	0.13	+0.2
4,208,479	-		GFF4189	0.15	-1.8
4,208,481	-		GFF4189	0.15	-1.7
4,208,515	+		GFF4189	0.22	-0.1
4,208,515	+		GFF4189	0.22	-0.8
4,208,515	+		GFF4189	0.22	-1.1
4,208,521	+		GFF4189	0.23	-1.5
4,208,523	-		GFF4189	0.24	+0.8
4,208,523	-		GFF4189	0.24	-2.0
4,208,523	-		GFF4189	0.24	-0.3
4,208,523	-		GFF4189	0.24	-0.8
4,208,529	-		GFF4189	0.25	+0.7
4,208,530	+		GFF4189	0.25	-0.4
4,208,530	+		GFF4189	0.25	-0.2
4,208,530	+		GFF4189	0.25	-0.3
4,208,530	+		GFF4189	0.25	-1.1
4,208,530	+		GFF4189	0.25	+1.0
4,208,538	-		GFF4189	0.27	+0.5
4,208,552	+		GFF4189	0.30	-2.0
4,208,552	+		GFF4189	0.30	-0.0
4,208,552	+		GFF4189	0.30	-0.7
4,208,557	+		GFF4189	0.31	-0.3
4,208,557	+		GFF4189	0.31	+0.8
4,208,557	+		GFF4189	0.31	-0.1
4,208,557	+		GFF4189	0.31	+0.0
4,208,557	+		GFF4189	0.31	+0.7
4,208,557	+		GFF4189	0.31	+0.8
4,208,565	-		GFF4189	0.32	-0.7
4,208,565	-		GFF4189	0.32	-1.0
4,208,565	-		GFF4189	0.32	+0.1
4,208,565	-		GFF4189	0.32	-0.1
4,208,565	-		GFF4189	0.32	-1.0
4,208,565	-		GFF4189	0.32	+1.2
4,208,570	-		GFF4189	0.33	-1.5
4,208,577	+		GFF4189	0.35	-0.3
4,208,578	+		GFF4189	0.35	-1.4
4,208,585	-		GFF4189	0.36	-1.2
4,208,586	-		GFF4189	0.36	+0.2
4,208,596	+		GFF4189	0.38	-0.2
4,208,596	+		GFF4189	0.38	+0.7
4,208,599	-		GFF4189	0.39	+0.5
4,208,601	+		GFF4189	0.39	+0.4
4,208,601	+		GFF4189	0.39	+0.4
4,208,601	+		GFF4189	0.39	-0.6
4,208,604	-		GFF4189	0.40	+0.3
4,208,607	+		GFF4189	0.41	+0.7
4,208,609	-		GFF4189	0.41	-1.1
4,208,623	+		GFF4189	0.44	-0.2
4,208,623	+		GFF4189	0.44	+1.5
4,208,623	+		GFF4189	0.44	-0.7
4,208,631	-		GFF4189	0.45	-1.2
4,208,631	-		GFF4189	0.45	+0.3
4,208,637	-		GFF4189	0.47	-0.4
4,208,641	-		GFF4189	0.47	-0.5
4,208,656	+		GFF4189	0.50	+0.9
4,208,656	+		GFF4189	0.50	+0.6
4,208,664	-		GFF4189	0.52	+0.0
4,208,664	-		GFF4189	0.52	-0.8
4,208,664	-		GFF4189	0.52	+1.3
4,208,664	-		GFF4189	0.52	-0.8
4,208,679	+		GFF4189	0.55	-1.1
4,208,687	-		GFF4189	0.56	-0.4
4,208,688	+		GFF4189	0.57	+0.2
4,208,696	-		GFF4189	0.58	+0.3
4,208,704	+		GFF4189	0.60	-0.3
4,208,714	+		GFF4189	0.62	-1.5
4,208,729	+		GFF4189	0.65	-0.5
4,208,731	-		GFF4189	0.65	-0.4
4,208,773	+		GFF4189	0.74	-1.8
4,208,773	+		GFF4189	0.74	+0.4
4,208,773	+		GFF4189	0.74	-1.7
4,208,773	+		GFF4189	0.74	-0.7
4,208,778	+		GFF4189	0.75	+0.5
4,208,778	+		GFF4189	0.75	-0.7
4,208,781	-		GFF4189	0.75	+0.4
4,208,785	+		GFF4189	0.76	-0.5
4,208,788	+		GFF4189	0.77	+0.6
4,208,800	-		GFF4189	0.79	-0.3
4,208,800	-		GFF4189	0.79	+0.3
4,208,800	-		GFF4189	0.79	-0.5
4,208,802	+		GFF4189	0.79	+0.3
4,208,810	-		GFF4189	0.81	+1.3
4,208,867	-				-0.4
4,208,868	-				+0.1
4,208,874	-				+0.2
4,208,887	+				-0.6
4,208,894	-				-0.4
4,208,894	-				-0.8
4,208,895	-				+0.3
4,208,895	-				-1.3
4,208,916	+				-0.8
4,208,916	+				-0.3
4,208,924	+				+1.4
4,208,924	-				+0.6
4,208,934	-				-1.5
4,208,937	+				-2.1
4,208,937	+				-1.8
4,208,937	+				-1.2
4,208,937	+				-1.9
4,208,937	+				+0.2
4,208,937	+				-0.8
4,208,939	+				-2.4
4,208,945	-				+1.6
4,208,947	-				-0.4
4,208,947	-				+0.6
4,208,954	+				+0.6
4,208,982	+				-1.0
4,208,984	+				-1.1
4,208,992	+				-0.8
4,209,033	-				-1.4
4,209,065	+				-2.8
4,209,106	+				-1.4
4,209,126	-				-0.4
4,209,170	-				-1.5
4,209,217	-		GFF4190	0.10	-2.5
4,209,249	-		GFF4190	0.12	-1.8
4,209,267	-		GFF4190	0.12	-1.8
4,209,273	+		GFF4190	0.13	-1.8
4,209,294	-		GFF4190	0.13	-1.7
4,209,308	-		GFF4190	0.14	-1.5
4,209,313	+		GFF4190	0.14	-1.3
4,209,313	+		GFF4190	0.14	-1.5
4,209,313	+		GFF4190	0.14	-1.5
4,209,321	-		GFF4190	0.14	-1.7
4,209,321	-		GFF4190	0.14	-3.6
4,209,326	-		GFF4190	0.14	-1.3
4,209,342	+		GFF4190	0.15	-1.5
4,209,344	+		GFF4190	0.15	-1.4
4,209,406	+		GFF4190	0.17	-1.8
4,209,414	-		GFF4190	0.18	-1.7
4,209,471	-		GFF4190	0.20	-1.3
4,209,471	-		GFF4190	0.20	-1.3
4,209,499	-		GFF4190	0.21	-1.3
4,209,529	-		GFF4190	0.22	-0.2
4,209,760	+		GFF4190	0.30	-1.3
4,209,844	-		GFF4190	0.33	-1.3
4,209,871	-		GFF4190	0.34	-1.4
4,209,878	-		GFF4190	0.34	-1.3
4,209,926	+		GFF4190	0.36	-2.7
4,209,976	+		GFF4190	0.38	-0.5
4,209,984	-		GFF4190	0.38	-2.7
4,210,093	+		GFF4190	0.42	-1.4
4,210,117	+		GFF4190	0.43	-1.5
4,210,147	-		GFF4190	0.44	-1.5
4,210,322	+		GFF4190	0.51	-1.4
4,210,349	-		GFF4190	0.52	-1.8
4,210,363	+		GFF4190	0.52	-1.3
4,210,371	-		GFF4190	0.52	-2.2
4,210,396	-		GFF4190	0.53	-1.4
4,210,396	-		GFF4190	0.53	-2.4
4,210,406	-		GFF4190	0.54	-2.0
4,210,459	-		GFF4190	0.56	-1.4
4,210,550	-		GFF4190	0.59	-1.8
4,210,555	-		GFF4190	0.59	-1.4
4,210,641	-		GFF4190	0.62	-1.5
4,210,664	+		GFF4190	0.63	-1.4
4,210,664	+		GFF4190	0.63	-1.8
4,210,664	+		GFF4190	0.63	-2.2
4,210,672	-		GFF4190	0.63	-0.4
4,210,817	-		GFF4190	0.69	-1.3
4,210,927	+		GFF4190	0.73	-2.1
4,210,927	+		GFF4190	0.73	-1.4
4,210,927	+		GFF4190	0.73	-1.5
4,210,927	+		GFF4190	0.73	-1.3
4,210,927	+		GFF4190	0.73	-1.7
4,210,955	+		GFF4190	0.74	-1.8
4,210,978	-		GFF4190	0.74	-1.3
4,211,055	+		GFF4190	0.77	-1.3
4,211,265	+		GFF4190	0.85	-2.0
4,211,386	+		GFF4190	0.89	-2.0
4,211,386	+		GFF4190	0.89	-1.9
4,211,436	-				-1.7
4,211,548	+				-1.8
4,211,556	-				-1.5
4,211,556	-				-1.4
4,211,556	-				-1.3
4,211,663	+				-1.4
4,211,663	+				-1.3
4,211,671	-				-1.9
4,211,671	-				-0.9
4,211,671	-				-3.1
4,211,671	-				-3.0
4,211,671	-				-1.3
4,211,679	+				-0.6
4,211,679	+				+0.1
4,211,679	+				-2.0
4,211,679	-				-0.5
4,211,685	+				-1.0
4,211,687	+				-1.8
4,211,688	-				+1.0
4,211,692	+				-1.7
4,211,693	-				-1.8
4,211,695	-				+0.2
4,211,697	+				-1.7
4,211,705	-				-0.8
4,211,713	-				-1.5
4,211,721	+				-1.1
4,211,737	+				-1.8
4,211,737	+				-1.2
4,211,761	+				+0.5
4,211,761	+				-0.2
4,211,765	+				+0.9
4,211,771	+				+0.0
4,211,785	+				-0.1
4,211,785	+				-1.4
4,211,785	+				+0.3
4,211,785	+				-1.1
4,211,793	-				-1.2
4,211,809	+				-0.2
4,211,819	+				-0.2
4,211,822	-				-0.2
4,211,829	-				-0.7
4,211,842	+				-0.2
4,211,848	-				-0.7
4,211,852	+				-0.6
4,211,852	-				-0.3
4,211,857	+				-2.4
4,211,858	-				+0.4
4,211,862	+				-0.5
4,211,862	+				-1.5
4,211,870	-				+0.2
4,211,876	-				-0.5
4,211,893	+				-1.0
4,211,903	+				-0.2
4,211,903	+				-1.5
4,211,903	+				+0.2
4,211,911	-				+0.7
4,211,913	+				+0.3
4,211,913	+				-0.9
4,211,913	+				-2.6
4,211,913	+				-0.4
4,211,913	+				+0.3
4,211,913	+				+0.6
4,211,913	+				-0.8
4,211,913	+				-1.2
4,211,913	+				-0.4
4,211,913	+				-0.4
4,211,913	+				+1.2
4,211,918	+				+0.6
4,211,921	-				-1.2
4,211,921	-				-0.0
4,211,921	-				-1.3
4,211,921	-				+0.4
4,211,923	+				+0.2
4,211,961	-				-1.2
4,211,972	+		GFF4191	0.10	-0.8
4,211,978	+		GFF4191	0.11	-0.7
4,211,978	+		GFF4191	0.11	+1.1
4,211,978	+		GFF4191	0.11	+0.3
4,211,981	-		GFF4191	0.11	-0.7
4,211,986	-		GFF4191	0.11	-1.0
4,212,009	-		GFF4191	0.12	-0.3
4,212,090	-		GFF4191	0.15	-0.2
4,212,090	-		GFF4191	0.15	+0.6
4,212,091	-		GFF4191	0.15	-1.3
4,212,093	+		GFF4191	0.15	-0.5
4,212,101	+		GFF4191	0.15	-0.1
4,212,104	-		GFF4191	0.15	+1.2
4,212,109	-		GFF4191	0.15	-0.5
4,212,115	+		GFF4191	0.16	+0.1
4,212,115	+		GFF4191	0.16	+0.6
4,212,123	-		GFF4191	0.16	-0.1
4,212,125	+		GFF4191	0.16	-1.6
4,212,136	+		GFF4191	0.16	+0.7
4,212,136	+		GFF4191	0.16	-0.2
4,212,142	+		GFF4191	0.17	+0.4
4,212,144	-		GFF4191	0.17	+0.4
4,212,152	-		GFF4191	0.17	-0.9
4,212,154	+		GFF4191	0.17	-0.4
4,212,162	-		GFF4191	0.17	+0.9
4,212,166	+		GFF4191	0.18	-1.5
4,212,166	+		GFF4191	0.18	+0.2
4,212,171	+		GFF4191	0.18	+1.2
4,212,174	-		GFF4191	0.18	-0.8
4,212,174	-		GFF4191	0.18	+1.0
4,212,174	-		GFF4191	0.18	+1.1
4,212,176	+		GFF4191	0.18	-1.3
4,212,185	+		GFF4191	0.18	+1.7
4,212,204	+		GFF4191	0.19	+1.6
4,212,204	-		GFF4191	0.19	+0.2
4,212,224	+		GFF4191	0.20	-0.2
4,212,234	+		GFF4191	0.20	-1.0
4,212,239	-		GFF4191	0.20	-1.8
4,212,242	-		GFF4191	0.21	+0.1
4,212,264	+		GFF4191	0.21	-1.1
4,212,272	-		GFF4191	0.22	+0.6
4,212,273	-		GFF4191	0.22	-0.9
4,212,273	-		GFF4191	0.22	-1.7
4,212,273	-		GFF4191	0.22	-0.7
4,212,282	+		GFF4191	0.22	+0.7
4,212,286	+		GFF4191	0.22	-2.7
4,212,328	+		GFF4191	0.24	-1.8
4,212,328	+		GFF4191	0.24	-0.0
4,212,338	-		GFF4191	0.24	-0.3
4,212,344	+		GFF4191	0.24	+1.4
4,212,350	+		GFF4191	0.25	+0.6
4,212,351	+		GFF4191	0.25	+0.6
4,212,351	+		GFF4191	0.25	-1.0
4,212,352	-		GFF4191	0.25	+1.3
4,212,354	-		GFF4191	0.25	+0.6
4,212,372	-		GFF4191	0.25	-0.8
4,212,374	+		GFF4191	0.26	-2.4
4,212,382	+		GFF4191	0.26	+0.3
4,212,382	+		GFF4191	0.26	-1.1
4,212,388	+		GFF4191	0.26	-2.4
4,212,390	-		GFF4191	0.26	+0.2
4,212,390	-		GFF4191	0.26	-0.9
4,212,390	-		GFF4191	0.26	-1.0
4,212,392	+		GFF4191	0.26	+1.4
4,212,398	+		GFF4191	0.26	-1.5
4,212,405	+		GFF4191	0.27	-1.2
4,212,406	-		GFF4191	0.27	-0.3
4,212,408	-		GFF4191	0.27	+0.0
4,212,429	+		GFF4191	0.28	+1.2
4,212,442	+		GFF4191	0.28	-1.7
4,212,446	+		GFF4191	0.28	+1.4
4,212,447	+		GFF4191	0.28	-0.4
4,212,447	-		GFF4191	0.28	-0.4
4,212,464	+		GFF4191	0.29	+0.6
4,212,472	-		GFF4191	0.29	+1.0
4,212,478	+		GFF4191	0.29	-0.8
4,212,478	+		GFF4191	0.29	+0.1
4,212,510	+		GFF4191	0.31	-0.4
4,212,510	+		GFF4191	0.31	-0.5
4,212,510	+		GFF4191	0.31	-0.6
4,212,510	+		GFF4191	0.31	+0.8
4,212,511	+		GFF4191	0.31	-0.7
4,212,519	-		GFF4191	0.31	-0.1
4,212,519	-		GFF4191	0.31	+0.6
4,212,519	-		GFF4191	0.31	+0.9
4,212,519	-		GFF4191	0.31	-1.2
4,212,526	-		GFF4191	0.31	+0.2
4,212,530	+		GFF4191	0.31	+0.0
4,212,566	+		GFF4191	0.33	-0.6
4,212,574	-		GFF4191	0.33	-0.7
4,212,574	-		GFF4191	0.33	-0.1
4,212,578	+		GFF4191	0.33	-0.5
4,212,578	+		GFF4191	0.33	-0.3
4,212,578	+		GFF4191	0.33	+0.7
4,212,578	+		GFF4191	0.33	-2.1
4,212,578	+		GFF4191	0.33	-0.0
4,212,578	+		GFF4191	0.33	-0.9
4,212,578	+		GFF4191	0.33	-1.2
4,212,578	+		GFF4191	0.33	+0.6
4,212,578	+		GFF4191	0.33	-0.4
4,212,578	+		GFF4191	0.33	-0.4
4,212,586	-		GFF4191	0.34	+0.3
4,212,586	-		GFF4191	0.34	-0.0
4,212,586	-		GFF4191	0.34	+0.2
4,212,586	-		GFF4191	0.34	-0.8
4,212,588	+		GFF4191	0.34	-1.5
4,212,599	+		GFF4191	0.34	+0.7
4,212,621	+		GFF4191	0.35	+0.3
4,212,629	-		GFF4191	0.35	-0.8
4,212,647	-		GFF4191	0.36	+1.5
4,212,655	+		GFF4191	0.36	+0.2