Strain Fitness in Sphingobium sp. HT1-2 around GFF4128

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,150,812	+		GFF4126	0.66	+0.3
4,150,812	+		GFF4126	0.66	+0.5
4,150,814	+		GFF4126	0.66	-1.3
4,150,815	-		GFF4126	0.66	-0.8
4,150,820	-		GFF4126	0.67	+0.3
4,150,836	+		GFF4126	0.68	+0.9
4,150,853	+		GFF4126	0.70	-2.2
4,150,860	+		GFF4126	0.71	+0.4
4,150,864	+		GFF4126	0.71	+0.2
4,150,864	+		GFF4126	0.71	-0.5
4,150,872	-		GFF4126	0.72	-2.7
4,150,872	-		GFF4126	0.72	-0.2
4,150,874	+		GFF4126	0.72	-0.8
4,150,882	-		GFF4126	0.73	+0.5
4,150,900	+		GFF4126	0.75	-0.7
4,150,908	-		GFF4126	0.76	-0.7
4,150,908	-		GFF4126	0.76	+0.6
4,150,910	+		GFF4126	0.76	-1.2
4,150,910	+		GFF4126	0.76	-1.0
4,150,910	+		GFF4126	0.76	-0.3
4,150,918	-		GFF4126	0.77	-0.0
4,150,918	-		GFF4126	0.77	-0.2
4,150,939	+		GFF4126	0.79	-0.7
4,150,939	+		GFF4126	0.79	-0.5
4,150,947	-		GFF4126	0.80	-0.5
4,150,947	-		GFF4126	0.80	+1.2
4,150,947	-		GFF4126	0.80	+1.9
4,150,948	+		GFF4126	0.80	-0.2
4,150,952	+		GFF4126	0.80	-0.1
4,150,952	+		GFF4126	0.80	-0.3
4,150,952	+		GFF4126	0.80	+1.1
4,150,960	-		GFF4126	0.81	+0.4
4,150,960	-		GFF4126	0.81	-0.4
4,151,006	-		GFF4126	0.86	+0.7
4,151,101	-				+0.3
4,151,105	-				-1.0
4,151,128	+				+1.7
4,151,176	-				+0.4
4,151,192	-				-0.2
4,151,212	+				-0.6
4,151,212	+				-2.0
4,151,220	-		GFF4127	0.10	+0.0
4,151,220	-		GFF4127	0.10	+1.8
4,151,220	-		GFF4127	0.10	+0.4
4,151,220	-		GFF4127	0.10	-0.3
4,151,222	+		GFF4127	0.11	-0.1
4,151,240	-		GFF4127	0.14	+0.7
4,151,262	-		GFF4127	0.17	+0.5
4,151,279	+		GFF4127	0.20	-1.5
4,151,279	+		GFF4127	0.20	-0.1
4,151,279	+		GFF4127	0.20	+0.6
4,151,279	+		GFF4127	0.20	+0.8
4,151,279	+		GFF4127	0.20	-1.7
4,151,279	+		GFF4127	0.20	-0.2
4,151,279	+		GFF4127	0.20	-1.9
4,151,279	+		GFF4127	0.20	-0.6
4,151,283	-		GFF4127	0.21	+0.2
4,151,287	-		GFF4127	0.21	+0.1
4,151,287	-		GFF4127	0.21	+0.5
4,151,296	+		GFF4127	0.23	-2.2
4,151,299	-		GFF4127	0.23	-0.7
4,151,304	-		GFF4127	0.24	-2.2
4,151,304	-		GFF4127	0.24	+0.7
4,151,304	-		GFF4127	0.24	-0.5
4,151,335	+		GFF4127	0.29	+0.4
4,151,342	+		GFF4127	0.30	-0.9
4,151,353	+		GFF4127	0.32	+1.3
4,151,373	-		GFF4127	0.35	+1.0
4,151,375	+		GFF4127	0.36	+1.2
4,151,375	+		GFF4127	0.36	+0.3
4,151,378	-		GFF4127	0.36	-0.6
4,151,415	-		GFF4127	0.42	-0.5
4,151,421	+		GFF4127	0.43	+0.0
4,151,422	-		GFF4127	0.43	+0.4
4,151,458	+		GFF4127	0.49	+0.3
4,151,458	+		GFF4127	0.49	-0.4
4,151,466	-		GFF4127	0.51	-1.6
4,151,466	-		GFF4127	0.51	+0.4
4,151,481	-		GFF4127	0.53	+0.1
4,151,482	+		GFF4127	0.53	-1.3
4,151,486	-		GFF4127	0.54	+0.8
4,151,486	-		GFF4127	0.54	+0.1
4,151,546	-		GFF4127	0.64	-0.4
4,151,553	+		GFF4127	0.65	-0.5
4,151,559	+		GFF4127	0.66	+0.3
4,151,564	+		GFF4127	0.67	+1.2
4,151,600	-		GFF4127	0.73	-1.1
4,151,603	+		GFF4127	0.73	+1.4
4,151,611	-		GFF4127	0.74	+0.0
4,151,611	-		GFF4127	0.74	+0.0
4,151,611	-		GFF4127	0.74	-0.0
4,151,613	-		GFF4127	0.75	+0.2
4,151,699	+		GFF4127	0.89	-1.4
4,151,699	+		GFF4127	0.89	-0.0
4,151,699	+		GFF4127	0.89	+0.6
4,151,699	+		GFF4127	0.89	-1.0
4,151,699	+		GFF4127	0.89	+1.4
4,151,699	+		GFF4127	0.89	-1.3
4,151,699	+		GFF4127	0.89	+1.0
4,151,699	+		GFF4127	0.89	-0.4
4,151,707	-				+0.7
4,151,707	-				-0.8
4,151,707	-				+0.2
4,151,707	-				+0.8
4,151,707	-				+1.3
4,151,709	-				+0.6
4,151,761	-				+0.0
4,151,769	-				-0.3
4,151,769	-				-0.6
4,151,769	-				+0.3
4,151,780	+				+0.7
4,151,807	+				-1.3
4,151,815	+				+0.2
4,151,836	+				-1.1
4,151,847	+				-1.6
4,151,847	+				-0.0
4,151,847	+				+1.7
4,151,847	+				-2.2
4,151,847	+				+0.0
4,151,847	+				-0.2
4,151,849	-				-0.0
4,151,855	-				+0.9
4,151,855	-				+0.2
4,151,857	+				-1.4
4,151,857	+				-0.1
4,151,857	+				+0.3
4,151,865	-				-0.9
4,151,865	-				-0.6
4,151,865	-				-1.6
4,151,865	-				-0.9
4,151,865	-				+0.4
4,151,865	-				-0.1
4,151,865	-				-1.3
4,151,884	-				-1.4
4,151,894	+				+0.5
4,151,894	+				+0.3
4,151,894	+				+0.3
4,151,894	+				-2.4
4,151,899	+				+0.5
4,151,902	-				+0.5
4,151,902	-				-0.7
4,151,917	-				-0.9
4,151,967	+				-0.2
4,151,973	+				-0.2
4,151,973	+				+1.0
4,151,975	-				-1.7
4,152,009	+				+0.7
4,152,017	-				-1.4
4,152,017	-				-2.5
4,152,060	+				-0.2
4,152,073	+		GFF4128	0.10	-0.3
4,152,081	-		GFF4128	0.10	-2.2
4,152,087	+		GFF4128	0.11	-0.2
4,152,087	+		GFF4128	0.11	+0.6
4,152,091	+		GFF4128	0.11	-1.5
4,152,095	-		GFF4128	0.11	-0.8
4,152,105	+		GFF4128	0.11	-0.2
4,152,110	+		GFF4128	0.12	+0.9
4,152,110	+		GFF4128	0.12	-0.6
4,152,113	-		GFF4128	0.12	-1.6
4,152,113	-		GFF4128	0.12	+0.9
4,152,133	+		GFF4128	0.12	+0.5
4,152,141	-		GFF4128	0.13	+1.1
4,152,154	-		GFF4128	0.13	+0.4
4,152,169	-		GFF4128	0.14	+0.0
4,152,177	+		GFF4128	0.14	-0.7
4,152,182	+		GFF4128	0.14	-0.3
4,152,187	+		GFF4128	0.14	+1.1
4,152,188	+		GFF4128	0.15	-1.5
4,152,247	+		GFF4128	0.17	-2.7
4,152,264	+		GFF4128	0.17	-1.1
4,152,291	+		GFF4128	0.18	+0.9
4,152,324	-		GFF4128	0.20	-2.0
4,152,337	-		GFF4128	0.20	+0.5
4,152,349	-		GFF4128	0.21	-0.5
4,152,363	-		GFF4128	0.21	-1.9
4,152,375	+		GFF4128	0.22	+0.3
4,152,378	-		GFF4128	0.22	-1.7
4,152,378	-		GFF4128	0.22	+0.6
4,152,380	+		GFF4128	0.22	+1.2
4,152,415	+		GFF4128	0.23	-1.3
4,152,415	+		GFF4128	0.23	+1.5
4,152,448	-		GFF4128	0.25	-0.7
4,152,485	+		GFF4128	0.26	+0.4
4,152,485	+		GFF4128	0.26	-0.8
4,152,485	+		GFF4128	0.26	-1.3
4,152,493	+		GFF4128	0.26	-0.8
4,152,493	-		GFF4128	0.26	+0.2
4,152,493	-		GFF4128	0.26	-0.3
4,152,493	-		GFF4128	0.26	+0.7
4,152,493	-		GFF4128	0.26	-0.6
4,152,530	-		GFF4128	0.28	+0.1
4,152,532	+		GFF4128	0.28	+0.6
4,152,552	-		GFF4128	0.28	-1.6
4,152,552	-		GFF4128	0.28	-3.1
4,152,554	-		GFF4128	0.29	-0.5
4,152,607	+		GFF4128	0.31	+0.6
4,152,618	+		GFF4128	0.31	-0.3
4,152,620	+		GFF4128	0.31	-0.0
4,152,626	-		GFF4128	0.31	-0.8
4,152,626	-		GFF4128	0.31	-1.0
4,152,626	-		GFF4128	0.31	-1.1
4,152,667	+		GFF4128	0.33	-0.4
4,152,677	+		GFF4128	0.33	+0.4
4,152,703	-		GFF4128	0.34	+1.2
4,152,709	+		GFF4128	0.35	-0.1
4,152,709	+		GFF4128	0.35	-1.4
4,152,727	-		GFF4128	0.35	-0.6
4,152,731	+		GFF4128	0.35	+1.7
4,152,766	+		GFF4128	0.37	-1.1
4,152,766	+		GFF4128	0.37	+1.2
4,152,766	+		GFF4128	0.37	-0.3
4,152,804	+		GFF4128	0.38	-0.1
4,152,808	+		GFF4128	0.38	-0.7
4,152,870	-		GFF4128	0.41	+0.4
4,152,891	-		GFF4128	0.42	-0.2
4,152,891	-		GFF4128	0.42	-2.2
4,152,912	+		GFF4128	0.42	+1.4
4,152,920	-		GFF4128	0.43	-1.4
4,152,920	-		GFF4128	0.43	-0.5
4,152,922	-		GFF4128	0.43	+1.6
4,152,964	+		GFF4128	0.44	-2.2
4,152,964	+		GFF4128	0.44	+0.8
4,152,983	+		GFF4128	0.45	+0.5
4,153,000	+		GFF4128	0.46	+1.0
4,153,000	+		GFF4128	0.46	-1.4
4,153,016	+		GFF4128	0.46	+0.2
4,153,021	+		GFF4128	0.47	+0.6
4,153,021	+		GFF4128	0.47	-0.7
4,153,021	+		GFF4128	0.47	+1.0
4,153,024	+		GFF4128	0.47	-0.8
4,153,028	+		GFF4128	0.47	+0.4
4,153,028	+		GFF4128	0.47	-0.7
4,153,028	+		GFF4128	0.47	-0.1
4,153,028	+		GFF4128	0.47	-2.5
4,153,029	-		GFF4128	0.47	+0.5
4,153,029	-		GFF4128	0.47	-0.1
4,153,029	-		GFF4128	0.47	+0.4
4,153,036	-		GFF4128	0.47	-1.6
4,153,043	+		GFF4128	0.47	+0.1
4,153,043	+		GFF4128	0.47	+0.4
4,153,043	+		GFF4128	0.47	+0.3
4,153,043	+		GFF4128	0.47	-0.2
4,153,043	+		GFF4128	0.47	-0.7
4,153,043	+		GFF4128	0.47	-1.5
4,153,043	+		GFF4128	0.47	-1.0
4,153,043	+		GFF4128	0.47	+0.4
4,153,043	+		GFF4128	0.47	+0.4
4,153,043	+		GFF4128	0.47	+0.2
4,153,043	+		GFF4128	0.47	+0.8
4,153,043	+		GFF4128	0.47	+0.3
4,153,043	+		GFF4128	0.47	-1.7
4,153,045	+		GFF4128	0.47	+0.2
4,153,045	+		GFF4128	0.47	+0.4
4,153,045	+		GFF4128	0.47	-1.8
4,153,051	-		GFF4128	0.48	+1.1
4,153,051	-		GFF4128	0.48	-1.6
4,153,051	-		GFF4128	0.48	+0.7
4,153,051	-		GFF4128	0.48	-1.3
4,153,051	-		GFF4128	0.48	-0.6
4,153,051	-		GFF4128	0.48	+0.1
4,153,051	-		GFF4128	0.48	+0.3
4,153,051	-		GFF4128	0.48	-0.0
4,153,051	-		GFF4128	0.48	-1.1
4,153,053	+		GFF4128	0.48	-0.7
4,153,053	+		GFF4128	0.48	-0.6
4,153,053	-		GFF4128	0.48	-0.5
4,153,057	-		GFF4128	0.48	-0.8
4,153,061	-		GFF4128	0.48	-0.6
4,153,061	-		GFF4128	0.48	+0.2
4,153,061	-		GFF4128	0.48	+1.4
4,153,063	+		GFF4128	0.48	-1.6
4,153,063	+		GFF4128	0.48	-0.1
4,153,063	+		GFF4128	0.48	-0.8
4,153,071	-		GFF4128	0.48	-1.8
4,153,071	-		GFF4128	0.48	-0.0
4,153,071	-		GFF4128	0.48	-0.4
4,153,071	-		GFF4128	0.48	+0.9
4,153,084	+		GFF4128	0.49	-0.6
4,153,084	+		GFF4128	0.49	+1.4
4,153,084	+		GFF4128	0.49	+0.9
4,153,084	+		GFF4128	0.49	-0.0
4,153,084	+		GFF4128	0.49	+1.1
4,153,084	+		GFF4128	0.49	+0.3
4,153,090	+		GFF4128	0.49	-0.2
4,153,092	-		GFF4128	0.49	-0.3
4,153,092	-		GFF4128	0.49	-1.1
4,153,092	-		GFF4128	0.49	-2.2
4,153,092	-		GFF4128	0.49	-0.2
4,153,101	+		GFF4128	0.50	-0.8
4,153,108	+		GFF4128	0.50	+0.9
4,153,114	-		GFF4128	0.50	-0.4
4,153,116	-		GFF4128	0.50	-0.5
4,153,121	+		GFF4128	0.50	-1.4
4,153,149	+		GFF4128	0.51	+0.3
4,153,149	-		GFF4128	0.51	-1.5
4,153,164	+		GFF4128	0.52	-0.4
4,153,172	-		GFF4128	0.52	+0.4
4,153,182	+		GFF4128	0.53	-0.4
4,153,182	+		GFF4128	0.53	-0.7
4,153,195	-		GFF4128	0.53	+0.7
4,153,195	-		GFF4128	0.53	-0.4
4,153,200	+		GFF4128	0.53	-1.7
4,153,231	-		GFF4128	0.55	-0.8
4,153,249	-		GFF4128	0.55	+0.6
4,153,257	+		GFF4128	0.56	+1.3
4,153,257	+		GFF4128	0.56	-2.1
4,153,265	-		GFF4128	0.56	+1.0
4,153,265	-		GFF4128	0.56	+0.2
4,153,265	-		GFF4128	0.56	-1.4
4,153,265	-		GFF4128	0.56	+1.2
4,153,265	-		GFF4128	0.56	+0.1
4,153,328	+		GFF4128	0.58	-1.2
4,153,328	+		GFF4128	0.58	-1.8
4,153,328	+		GFF4128	0.58	-0.6
4,153,328	+		GFF4128	0.58	-1.3
4,153,328	+		GFF4128	0.58	-1.1
4,153,336	-		GFF4128	0.59	-2.0
4,153,336	-		GFF4128	0.59	-1.1
4,153,336	-		GFF4128	0.59	+0.2
4,153,356	+		GFF4128	0.59	-0.1
4,153,364	-		GFF4128	0.60	-0.6
4,153,364	-		GFF4128	0.60	-1.3
4,153,364	-		GFF4128	0.60	+0.1
4,153,372	+		GFF4128	0.60	+0.8
4,153,372	+		GFF4128	0.60	+0.0
4,153,385	-		GFF4128	0.60	+0.5
4,153,417	+		GFF4128	0.62	-1.6
4,153,425	+		GFF4128	0.62	+0.7
4,153,433	-		GFF4128	0.62	+0.6
4,153,448	-		GFF4128	0.63	-0.3
4,153,449	-		GFF4128	0.63	+0.4
4,153,449	-		GFF4128	0.63	-0.2
4,153,460	+		GFF4128	0.63	+0.1
4,153,468	-		GFF4128	0.64	+1.2
4,153,517	-		GFF4128	0.66	+1.0
4,153,550	-		GFF4128	0.67	-0.5
4,153,552	-		GFF4128	0.67	+1.4
4,153,580	+		GFF4128	0.68	-0.6
4,153,640	-		GFF4128	0.70	-1.2
4,153,640	-		GFF4128	0.70	-0.3
4,153,642	+		GFF4128	0.70	-1.4
4,153,642	-		GFF4128	0.70	+0.4
4,153,656	-		GFF4128	0.71	+0.2
4,153,656	-		GFF4128	0.71	+0.1
4,153,677	+		GFF4128	0.72	-2.5
4,153,677	+		GFF4128	0.72	-2.5
4,153,685	-		GFF4128	0.72	-0.4
4,153,689	+		GFF4128	0.72	+0.3
4,153,691	+		GFF4128	0.72	-0.1
4,153,691	-		GFF4128	0.72	+0.3
4,153,699	-		GFF4128	0.73	+1.0
4,153,708	-		GFF4128	0.73	+1.1
4,153,719	+		GFF4128	0.73	+0.7
4,153,732	-		GFF4128	0.74	-0.5
4,153,737	-		GFF4128	0.74	+0.0
4,153,744	+		GFF4128	0.74	+0.6
4,153,752	-		GFF4128	0.75	-0.6
4,153,754	-		GFF4128	0.75	-0.4
4,153,754	-		GFF4128	0.75	+1.1
4,153,754	-		GFF4128	0.75	-1.7
4,153,812	+		GFF4128	0.77	+0.2
4,153,812	+		GFF4128	0.77	+0.3
4,153,833	+		GFF4128	0.78	-0.7
4,153,843	-		GFF4128	0.78	-2.4
4,153,847	-		GFF4128	0.78	-0.2
4,153,847	-		GFF4128	0.78	-1.9
4,153,851	+		GFF4128	0.78	+0.3
4,153,859	-		GFF4128	0.79	-1.6
4,153,896	+		GFF4128	0.80	-0.1
4,153,904	-		GFF4128	0.80	+0.1
4,153,919	-		GFF4128	0.81	-0.5
4,153,919	-		GFF4128	0.81	-0.6
4,153,924	+		GFF4128	0.81	-2.7
4,153,924	+		GFF4128	0.81	-1.2
4,153,932	-		GFF4128	0.81	+0.4
4,153,932	-		GFF4128	0.81	-0.1
4,153,934	-		GFF4128	0.82	+0.0
4,153,954	+		GFF4128	0.82	-1.4
4,153,954	+		GFF4128	0.82	+0.5
4,153,962	-		GFF4128	0.83	-1.2
4,153,962	-		GFF4128	0.83	+0.5
4,154,007	-		GFF4128	0.84	+1.0
4,154,017	+		GFF4128	0.85	-2.0
4,154,030	-		GFF4128	0.85	-2.1
4,154,030	-		GFF4128	0.85	-0.3
4,154,034	+		GFF4128	0.85	-0.4
4,154,034	+		GFF4128	0.85	-1.5
4,154,034	+		GFF4128	0.85	+0.3
4,154,034	+		GFF4128	0.85	-0.4
4,154,034	+		GFF4128	0.85	+0.6
4,154,034	+		GFF4128	0.85	+0.1
4,154,034	+		GFF4128	0.85	+0.5
4,154,034	+		GFF4128	0.85	+0.1
4,154,034	+		GFF4128	0.85	-1.2
4,154,034	+		GFF4128	0.85	-1.0
4,154,034	+		GFF4128	0.85	-0.2
4,154,034	+		GFF4128	0.85	+0.7
4,154,042	-		GFF4128	0.86	-0.2
4,154,042	-		GFF4128	0.86	+0.1
4,154,042	-		GFF4128	0.86	-1.3
4,154,042	-		GFF4128	0.86	-1.5
4,154,042	-		GFF4128	0.86	-1.4
4,154,042	-		GFF4128	0.86	-0.3
4,154,042	-		GFF4128	0.86	-2.2
4,154,042	-		GFF4128	0.86	-1.6
4,154,042	-		GFF4128	0.86	-0.0
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4,154,042	-		GFF4128	0.86	-0.2
4,154,044	+		GFF4128	0.86	-0.5
4,154,044	+		GFF4128	0.86	+0.3
4,154,047	-		GFF4128	0.86	-1.4
4,154,052	-		GFF4128	0.86	-2.1
4,154,055	+		GFF4128	0.86	-1.5
4,154,081	+		GFF4128	0.87	-1.4
4,154,102	-		GFF4128	0.88	+0.0
4,154,107	+		GFF4128	0.88	+0.0
4,154,107	+		GFF4128	0.88	-0.7
4,154,107	+		GFF4128	0.88	+0.6
4,154,115	-		GFF4128	0.89	+0.4
4,154,115	-		GFF4128	0.89	-0.5
4,154,115	-		GFF4128	0.89	-0.5
4,154,162	+				+0.1
4,154,182	+				+0.9
4,154,190	-				+1.2
4,154,204	-				-1.2
4,154,205	-				-0.4
4,154,221	-				+0.6
4,154,246	+				+0.4
4,154,275	+				+0.9
4,154,275	+				-0.2
4,154,336	-				-0.6
4,154,350	+				-1.1
4,154,426	+				-0.6
4,154,445	-				-0.5
4,154,451	+				-1.0
4,154,457	-				+0.2
4,154,459	-				+0.5
4,154,467	-				-1.8
4,154,867	+		GFF4129	0.40	+0.7
4,154,930	-		GFF4129	0.47	+1.7