Strain Fitness in Sphingobium sp. HT1-2 around GFF4074

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,085,048	+		GFF4072	0.37	+0.0
4,085,048	+		GFF4072	0.37	-1.5
4,085,048	+		GFF4072	0.37	-0.3
4,085,048	+		GFF4072	0.37	-0.5
4,085,054	-		GFF4072	0.38	+0.8
4,085,056	-		GFF4072	0.38	+0.6
4,085,058	+		GFF4072	0.38	-0.2
4,085,061	-		GFF4072	0.39	+0.4
4,085,075	+		GFF4072	0.40	-1.7
4,085,086	+		GFF4072	0.42	-1.5
4,085,088	+		GFF4072	0.42	-1.7
4,085,094	-		GFF4072	0.43	-0.4
4,085,095	-		GFF4072	0.43	-0.3
4,085,103	-		GFF4072	0.44	+0.4
4,085,130	-		GFF4072	0.48	+1.1
4,085,130	-		GFF4072	0.48	-0.6
4,085,143	+		GFF4072	0.49	+0.6
4,085,143	+		GFF4072	0.49	-0.6
4,085,148	+		GFF4072	0.50	-0.6
4,085,148	+		GFF4072	0.50	+1.5
4,085,156	-		GFF4072	0.51	-0.1
4,085,156	-		GFF4072	0.51	+1.3
4,085,156	-		GFF4072	0.51	+0.9
4,085,204	+		GFF4072	0.58	-1.0
4,085,205	-		GFF4072	0.58	-0.7
4,085,238	-		GFF4072	0.62	-0.0
4,085,252	+		GFF4072	0.64	+1.3
4,085,265	-		GFF4072	0.66	+0.2
4,085,266	+		GFF4072	0.66	-1.1
4,085,275	-		GFF4072	0.67	-0.3
4,085,280	+		GFF4072	0.68	-1.4
4,085,280	+		GFF4072	0.68	-0.3
4,085,280	+		GFF4072	0.68	-2.4
4,085,288	-		GFF4072	0.69	-0.5
4,085,288	-		GFF4072	0.69	+0.8
4,085,328	+		GFF4072	0.74	+0.2
4,085,336	-		GFF4072	0.75	-0.7
4,085,351	-		GFF4072	0.77	-0.4
4,085,374	+		GFF4072	0.80	-0.1
4,085,380	+		GFF4072	0.81	-1.8
4,085,389	-		GFF4072	0.82	-0.3
4,085,402	+		GFF4072	0.84	-0.2
4,085,410	-		GFF4072	0.85	-1.2
4,085,433	+		GFF4072	0.88	+0.5
4,085,436	-		GFF4072	0.88	-2.3
4,085,470	+				-1.2
4,085,470	+				+1.1
4,085,470	+				-0.6
4,085,470	+				+0.6
4,085,470	+				+0.5
4,085,470	+				+0.0
4,085,471	-				+0.6
4,085,475	+				-1.4
4,085,478	-				+0.0
4,085,478	-				+0.4
4,085,478	-				+0.2
4,085,478	-				-1.6
4,085,478	-				-0.5
4,085,478	-				-1.3
4,085,478	-				-1.8
4,085,485	+				-0.7
4,085,485	+				-0.3
4,085,493	-				+0.6
4,085,493	-				-1.6
4,085,493	-				+0.6
4,085,494	+				-0.4
4,085,499	+				+0.9
4,085,499	+				-0.7
4,085,502	-				-0.1
4,085,502	-				-1.3
4,085,502	-				-0.3
4,085,507	-				+0.5
4,085,507	-				+0.0
4,085,517	+				+0.9
4,085,517	+				+0.2
4,085,517	+				-0.2
4,085,517	+				-0.2
4,085,517	-				+1.5
4,085,520	-				-1.1
4,085,525	-				-0.3
4,085,531	-				+0.0
4,085,533	+				-1.5
4,085,533	+				-0.0
4,085,566	+				-0.7
4,085,569	-				+1.0
4,085,571	+				-2.6
4,085,574	-				-0.7
4,085,574	-				-0.4
4,085,574	-				-0.1
4,085,576	+				+0.6
4,085,579	-				-0.5
4,085,598	-				-0.4
4,085,616	+				+0.1
4,085,616	+				+0.7
4,085,616	+				+0.2
4,085,616	+				+1.2
4,085,616	+				-0.4
4,085,616	+				+0.1
4,085,616	+				-1.7
4,085,616	+				+0.0
4,085,616	+				+0.2
4,085,616	+				+0.0
4,085,616	+				+0.5
4,085,624	+				-0.4
4,085,624	-				+1.6
4,085,624	-				+0.2
4,085,624	-				+0.0
4,085,624	-				-0.7
4,085,624	-				-2.4
4,085,624	-				-0.8
4,085,624	-				-0.4
4,085,624	-				+0.2
4,085,625	+				+0.5
4,085,632	-				-0.4
4,085,633	-				-0.3
4,085,640	+				+0.5
4,085,640	+				-0.7
4,085,642	+				+0.2
4,085,681	-		GFF4073	0.20	+1.2
4,085,681	-		GFF4073	0.20	+0.9
4,085,681	-		GFF4073	0.20	-0.8
4,085,704	-		GFF4073	0.25	-0.4
4,085,706	+		GFF4073	0.26	-0.4
4,085,706	+		GFF4073	0.26	-0.6
4,085,706	+		GFF4073	0.26	+0.8
4,085,706	+		GFF4073	0.26	+0.3
4,085,706	+		GFF4073	0.26	+0.1
4,085,706	+		GFF4073	0.26	+0.6
4,085,706	+		GFF4073	0.26	-1.0
4,085,711	+		GFF4073	0.27	-0.9
4,085,714	-		GFF4073	0.28	-1.6
4,085,714	-		GFF4073	0.28	+0.5
4,085,716	+		GFF4073	0.28	+0.9
4,085,719	-		GFF4073	0.29	-2.4
4,085,719	-		GFF4073	0.29	-1.4
4,085,721	+		GFF4073	0.30	-0.3
4,085,721	+		GFF4073	0.30	+0.4
4,085,729	-		GFF4073	0.32	-0.3
4,085,753	+		GFF4073	0.38	+0.6
4,085,761	-		GFF4073	0.40	+0.9
4,085,762	+		GFF4073	0.40	+0.2
4,085,798	-		GFF4073	0.49	-1.2
4,085,811	+		GFF4073	0.52	-1.3
4,085,842	+		GFF4073	0.60	+0.1
4,085,850	-		GFF4073	0.62	+0.8
4,085,874	+		GFF4073	0.68	+0.0
4,085,874	+		GFF4073	0.68	+0.6
4,085,879	+		GFF4073	0.69	-0.9
4,085,879	+		GFF4073	0.69	-0.8
4,085,879	+		GFF4073	0.69	-1.9
4,085,879	+		GFF4073	0.69	-0.2
4,085,879	+		GFF4073	0.69	-0.2
4,085,879	+		GFF4073	0.69	-0.1
4,085,879	+		GFF4073	0.69	-1.0
4,085,879	+		GFF4073	0.69	-2.3
4,085,879	+		GFF4073	0.69	-0.9
4,085,879	+		GFF4073	0.69	+0.5
4,085,887	-		GFF4073	0.71	-1.3
4,085,887	-		GFF4073	0.71	-1.5
4,085,887	-		GFF4073	0.71	-1.4
4,085,887	-		GFF4073	0.71	-0.6
4,085,887	-		GFF4073	0.71	+0.9
4,085,942	+		GFF4073	0.85	-0.4
4,085,965	-				+0.8
4,085,981	+				+0.1
4,085,992	+				-0.4
4,085,997	+				-1.0
4,085,997	+				+1.0
4,085,997	+				-0.1
4,085,999	+				+0.2
4,085,999	+				-0.2
4,086,005	-				-1.0
4,086,007	-				-0.6
4,086,007	-				-0.3
4,086,043	+				-0.3
4,086,043	+				+0.2
4,086,063	+				+0.7
4,086,068	+		GFF4074	0.10	-0.1
4,086,073	+		GFF4074	0.12	-3.3
4,086,076	-		GFF4074	0.12	-1.1
4,086,101	+		GFF4074	0.19	-1.5
4,086,104	-		GFF4074	0.20	-0.2
4,086,116	+		GFF4074	0.24	-0.2
4,086,119	-		GFF4074	0.25	-1.7
4,086,145	-		GFF4074	0.32	-0.2
4,086,177	-		GFF4074	0.41	+1.0
4,086,177	-		GFF4074	0.41	+0.4
4,086,198	-		GFF4074	0.47	+0.1
4,086,198	-		GFF4074	0.47	+1.9
4,086,198	-		GFF4074	0.47	+0.3
4,086,246	-		GFF4074	0.60	-0.1
4,086,258	-		GFF4074	0.64	+0.6
4,086,263	-		GFF4074	0.65	-0.2
4,086,303	+		GFF4074	0.77	-0.9
4,086,311	-		GFF4074	0.79	-2.2
4,086,319	+		GFF4074	0.81	-1.7
4,086,371	-				-0.7
4,086,375	-				-1.8
4,086,375	-				-0.9
4,086,377	+				-1.2
4,086,395	-				+1.0
4,086,405	-				-0.6
4,086,414	-				+0.6
4,086,421	+				-0.8
4,086,426	+				-2.0
4,086,426	+				-1.3
4,086,485	-				-0.9
4,086,498	+				-0.3
4,086,508	+				+0.9
4,086,520	+				-1.3
4,086,520	+				-0.4
4,086,525	+				-0.8
4,086,528	-				-0.5
4,086,533	+				-1.6
4,086,537	+				+0.5
4,086,564	-				-2.6
4,086,592	+				-2.6
4,086,592	+				-0.8
4,086,592	+				-1.5
4,086,599	-				-1.2
4,086,600	-				-0.7
4,086,600	-				-1.3
4,086,600	-				-1.9
4,086,600	-				-2.3
4,086,600	-				+0.2
4,086,605	-				-0.7
4,086,610	-				+0.2
4,086,659	+		GFF4075	0.13	-1.3
4,086,665	+		GFF4075	0.13	-0.3
4,086,678	-		GFF4075	0.14	-1.3
4,086,683	+		GFF4075	0.15	-1.3
4,086,716	+		GFF4075	0.17	-2.1
4,086,806	+		GFF4075	0.24	-1.7
4,086,835	-		GFF4075	0.26	-1.9
4,086,844	-		GFF4075	0.26	-0.0
4,086,844	-		GFF4075	0.26	-0.2
4,086,851	+		GFF4075	0.27	-2.7
4,086,859	-		GFF4075	0.28	-1.2
4,086,859	-		GFF4075	0.28	-0.3
4,086,885	+		GFF4075	0.30	+0.0
4,086,885	+		GFF4075	0.30	-1.9
4,086,885	+		GFF4075	0.30	-2.3
4,086,885	+		GFF4075	0.30	-1.7
4,086,885	+		GFF4075	0.30	+2.0
4,086,885	+		GFF4075	0.30	-2.4
4,086,885	+		GFF4075	0.30	-0.6
4,086,885	+		GFF4075	0.30	+0.4
4,086,885	+		GFF4075	0.30	-0.6
4,086,885	+		GFF4075	0.30	+0.5
4,086,885	+		GFF4075	0.30	-2.0
4,086,893	-		GFF4075	0.30	-1.0
4,086,893	-		GFF4075	0.30	-0.8
4,086,893	-		GFF4075	0.30	-1.0
4,086,893	-		GFF4075	0.30	-3.0
4,086,893	-		GFF4075	0.30	+0.2
4,086,893	-		GFF4075	0.30	-2.4
4,086,893	-		GFF4075	0.30	-1.8
4,086,893	-		GFF4075	0.30	+0.2
4,086,893	-		GFF4075	0.30	-1.0
4,086,893	-		GFF4075	0.30	-0.9
4,086,895	+		GFF4075	0.30	-2.5
4,086,895	+		GFF4075	0.30	+0.3
4,086,896	+		GFF4075	0.30	-1.3
4,086,896	+		GFF4075	0.30	-1.5
4,086,901	+		GFF4075	0.31	-2.6
4,086,904	-		GFF4075	0.31	-1.4
4,086,904	-		GFF4075	0.31	-1.3
4,086,904	-		GFF4075	0.31	-1.1
4,086,908	+		GFF4075	0.31	-1.2
4,086,908	+		GFF4075	0.31	-2.7
4,086,908	+		GFF4075	0.31	-1.3
4,086,913	+		GFF4075	0.32	-0.2
4,086,913	+		GFF4075	0.32	-1.4
4,086,913	+		GFF4075	0.32	-0.2
4,086,913	+		GFF4075	0.32	-0.9
4,086,916	-		GFF4075	0.32	-1.9
4,086,918	+		GFF4075	0.32	-0.5
4,086,921	-		GFF4075	0.32	-0.8
4,086,921	-		GFF4075	0.32	-0.4
4,086,921	-		GFF4075	0.32	-1.6
4,086,921	-		GFF4075	0.32	-0.6
4,086,921	-		GFF4075	0.32	+0.1
4,086,921	-		GFF4075	0.32	-2.2
4,086,921	-		GFF4075	0.32	-0.7
4,086,952	+		GFF4075	0.34	+0.4
4,086,952	+		GFF4075	0.34	-2.2
4,086,968	+		GFF4075	0.36	-1.9
4,086,968	+		GFF4075	0.36	-1.3
4,086,968	+		GFF4075	0.36	-1.9
4,086,968	+		GFF4075	0.36	-1.4
4,086,976	-		GFF4075	0.36	-0.4
4,087,002	-		GFF4075	0.38	-0.4
4,087,007	-		GFF4075	0.38	-1.5
4,087,014	+		GFF4075	0.39	-1.0
4,087,022	-		GFF4075	0.40	+0.2
4,087,045	-		GFF4075	0.41	+0.0
4,087,069	-		GFF4075	0.43	-2.5
4,087,069	-		GFF4075	0.43	-1.8
4,087,076	-		GFF4075	0.44	-0.8
4,087,093	+		GFF4075	0.45	+0.3
4,087,101	-		GFF4075	0.45	-0.8
4,087,103	+		GFF4075	0.46	-1.5
4,087,111	-		GFF4075	0.46	+0.4
4,087,126	+		GFF4075	0.47	+0.6
4,087,127	-		GFF4075	0.47	-2.0
4,087,127	-		GFF4075	0.47	-2.4
4,087,127	-		GFF4075	0.47	-0.6
4,087,127	-		GFF4075	0.47	+0.2
4,087,127	-		GFF4075	0.47	-0.5
4,087,127	-		GFF4075	0.47	-2.4
4,087,134	+		GFF4075	0.48	-1.8
4,087,151	+		GFF4075	0.49	+0.5
4,087,169	+		GFF4075	0.50	-1.8
4,087,172	+		GFF4075	0.51	-1.6
4,087,188	+		GFF4075	0.52	-1.9
4,087,195	-		GFF4075	0.52	-1.3
4,087,227	+		GFF4075	0.55	-0.3
4,087,232	+		GFF4075	0.55	+0.2
4,087,235	-		GFF4075	0.55	-0.3
4,087,240	-		GFF4075	0.56	-1.4
4,087,251	+		GFF4075	0.56	-1.4
4,087,259	-		GFF4075	0.57	-1.4
4,087,259	-		GFF4075	0.57	-1.2
4,087,264	+		GFF4075	0.57	+0.5
4,087,264	+		GFF4075	0.57	-1.4
4,087,272	-		GFF4075	0.58	-0.9
4,087,283	+		GFF4075	0.59	-2.0
4,087,310	+		GFF4075	0.61	-1.4
4,087,310	+		GFF4075	0.61	-0.1
4,087,310	+		GFF4075	0.61	-2.5
4,087,310	+		GFF4075	0.61	+0.1
4,087,310	+		GFF4075	0.61	-1.4
4,087,310	+		GFF4075	0.61	-1.4
4,087,310	+		GFF4075	0.61	-0.4
4,087,318	-		GFF4075	0.61	-1.4
4,087,318	-		GFF4075	0.61	-0.0
4,087,318	-		GFF4075	0.61	+1.1
4,087,318	-		GFF4075	0.61	-1.5
4,087,318	-		GFF4075	0.61	-0.2
4,087,318	-		GFF4075	0.61	+0.4
4,087,318	-		GFF4075	0.61	-1.7
4,087,318	-		GFF4075	0.61	+0.8
4,087,320	+		GFF4075	0.62	-1.8
4,087,320	+		GFF4075	0.62	-0.8
4,087,320	+		GFF4075	0.62	-0.6
4,087,320	+		GFF4075	0.62	+0.1
4,087,320	+		GFF4075	0.62	-0.6
4,087,320	+		GFF4075	0.62	-1.1
4,087,328	-		GFF4075	0.62	-0.1
4,087,328	-		GFF4075	0.62	+0.1
4,087,328	-		GFF4075	0.62	-1.8
4,087,328	-		GFF4075	0.62	-1.6
4,087,328	-		GFF4075	0.62	-0.7
4,087,334	+		GFF4075	0.63	+0.9
4,087,334	+		GFF4075	0.63	-1.8
4,087,334	+		GFF4075	0.63	-0.7
4,087,334	+		GFF4075	0.63	-1.9
4,087,334	+		GFF4075	0.63	-1.2
4,087,334	+		GFF4075	0.63	-0.6
4,087,334	+		GFF4075	0.63	-1.7
4,087,334	+		GFF4075	0.63	-0.3
4,087,334	+		GFF4075	0.63	-1.5
4,087,334	+		GFF4075	0.63	-0.7
4,087,342	-		GFF4075	0.63	+0.0
4,087,342	-		GFF4075	0.63	-0.4
4,087,342	-		GFF4075	0.63	+0.5
4,087,342	-		GFF4075	0.63	+1.4
4,087,342	-		GFF4075	0.63	+0.1
4,087,342	-		GFF4075	0.63	-0.4
4,087,373	+		GFF4075	0.65	-1.4