Strain Fitness in Sphingobium sp. HT1-2 around GFF4071

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,083,311	+				-1.2
4,083,319	-				+0.6
4,083,332	+				+0.0
4,083,338	-				+0.0
4,083,338	-				+0.3
4,083,340	-				-0.2
4,083,354	-				+0.4
4,083,358	+				+0.1
4,083,358	+				-2.5
4,083,358	+				-1.3
4,083,366	-				+0.1
4,083,392	+				+0.8
4,083,397	+				-0.0
4,083,400	-				-1.6
4,083,407	+				-0.6
4,084,221	-				-0.4
4,084,221	-				-0.6
4,084,221	-				-1.0
4,084,221	-				-0.0
4,084,253	-				-0.9
4,084,253	-				+0.8
4,084,253	-				-0.6
4,084,253	-				+1.5
4,084,297	-				+0.5
4,084,310	+				-0.2
4,084,318	-				-1.3
4,084,323	-				+0.4
4,084,323	-				-1.6
4,084,323	-				+0.7
4,084,323	-				-1.8
4,084,334	+				+0.8
4,084,334	+				+0.5
4,084,334	+				+0.7
4,084,334	+				-0.1
4,084,342	-		GFF4071	0.11	+1.3
4,084,350	+		GFF4071	0.12	-0.5
4,084,369	+		GFF4071	0.16	-1.6
4,084,379	+		GFF4071	0.18	+1.3
4,084,381	+		GFF4071	0.19	-0.8
4,084,391	+		GFF4071	0.21	-0.0
4,084,394	-		GFF4071	0.22	+1.2
4,084,410	+		GFF4071	0.25	-1.0
4,084,410	+		GFF4071	0.25	+1.4
4,084,418	-		GFF4071	0.27	-1.7
4,084,447	+		GFF4071	0.33	+0.7
4,084,447	+		GFF4071	0.33	+0.7
4,084,447	+		GFF4071	0.33	-1.3
4,084,450	+		GFF4071	0.33	+0.6
4,084,473	-		GFF4071	0.38	+0.6
4,084,494	+		GFF4071	0.42	+0.9
4,084,503	+		GFF4071	0.44	+0.3
4,084,503	+		GFF4071	0.44	+0.7
4,084,511	-		GFF4071	0.46	-0.4
4,084,533	+		GFF4071	0.50	+0.6
4,084,533	+		GFF4071	0.50	+1.5
4,084,533	+		GFF4071	0.50	-2.4
4,084,541	-		GFF4071	0.52	-0.8
4,084,541	-		GFF4071	0.52	-0.7
4,084,541	-		GFF4071	0.52	-0.7
4,084,554	-		GFF4071	0.55	-0.8
4,084,588	+		GFF4071	0.62	-2.3
4,084,588	+		GFF4071	0.62	+0.3
4,084,592	+		GFF4071	0.63	+0.9
4,084,596	-		GFF4071	0.63	+0.5
4,084,596	-		GFF4071	0.63	-1.5
4,084,596	-		GFF4071	0.63	-0.2
4,084,611	-		GFF4071	0.66	-0.9
4,084,628	+		GFF4071	0.70	+0.6
4,084,642	+		GFF4071	0.73	-1.0
4,084,698	-		GFF4071	0.84	-0.4
4,084,699	-		GFF4071	0.85	+0.1
4,084,706	-		GFF4071	0.86	-0.2
4,084,716	-		GFF4071	0.88	+0.0
4,084,753	+				-0.4
4,084,753	+				-1.2
4,084,761	-				+0.5
4,084,771	+				+0.8
4,084,774	-				-1.6
4,084,774	-				-0.5
4,084,780	+				+0.2
4,084,788	-				-1.5
4,084,788	-				-0.6
4,084,788	-				+0.0
4,084,789	-				+0.6
4,084,827	+				-1.6
4,084,827	+				+0.2
4,084,827	+				-0.5
4,084,827	+				+1.0
4,084,827	+				-0.6
4,084,835	-				+0.4
4,084,837	+				-0.4
4,084,837	+				-1.5
4,084,845	-		GFF4072	0.10	-1.2
4,084,863	-		GFF4072	0.12	-1.4
4,084,874	+		GFF4072	0.14	-0.4
4,084,874	+		GFF4072	0.14	-0.4
4,084,874	-		GFF4072	0.14	-0.1
4,084,879	+		GFF4072	0.15	+0.2
4,084,882	-		GFF4072	0.15	-0.3
4,084,882	-		GFF4072	0.15	-2.0
4,084,882	-		GFF4072	0.15	-1.3
4,084,889	-		GFF4072	0.16	+0.2
4,084,889	-		GFF4072	0.16	-2.7
4,084,905	-		GFF4072	0.18	-0.1
4,084,924	-		GFF4072	0.21	-0.4
4,084,977	+		GFF4072	0.28	-0.7
4,084,980	-		GFF4072	0.28	+0.4
4,084,986	+		GFF4072	0.29	-0.0
4,084,986	+		GFF4072	0.29	-0.1
4,084,986	+		GFF4072	0.29	+0.3
4,084,991	+		GFF4072	0.29	+0.2
4,084,991	+		GFF4072	0.29	+0.4
4,084,991	+		GFF4072	0.29	-0.5
4,084,994	-		GFF4072	0.30	-1.0
4,084,994	-		GFF4072	0.30	+0.3
4,084,994	-		GFF4072	0.30	-1.8
4,084,994	-		GFF4072	0.30	+1.1
4,084,994	-		GFF4072	0.30	+1.3
4,084,994	-		GFF4072	0.30	-0.4
4,084,998	+		GFF4072	0.30	-0.2
4,084,999	-		GFF4072	0.30	-2.8
4,085,008	+		GFF4072	0.32	+0.4
4,085,008	+		GFF4072	0.32	-0.3
4,085,025	-		GFF4072	0.34	-0.3
4,085,048	+		GFF4072	0.37	+0.0
4,085,048	+		GFF4072	0.37	-1.5
4,085,048	+		GFF4072	0.37	-0.3
4,085,048	+		GFF4072	0.37	-0.5
4,085,054	-		GFF4072	0.38	+0.8
4,085,056	-		GFF4072	0.38	+0.6
4,085,058	+		GFF4072	0.38	-0.2
4,085,061	-		GFF4072	0.39	+0.4
4,085,075	+		GFF4072	0.40	-1.7
4,085,086	+		GFF4072	0.42	-1.5
4,085,088	+		GFF4072	0.42	-1.7
4,085,094	-		GFF4072	0.43	-0.4
4,085,095	-		GFF4072	0.43	-0.3
4,085,103	-		GFF4072	0.44	+0.4
4,085,130	-		GFF4072	0.48	+1.1
4,085,130	-		GFF4072	0.48	-0.6
4,085,143	+		GFF4072	0.49	+0.6
4,085,143	+		GFF4072	0.49	-0.6
4,085,148	+		GFF4072	0.50	-0.6
4,085,148	+		GFF4072	0.50	+1.5
4,085,156	-		GFF4072	0.51	-0.1
4,085,156	-		GFF4072	0.51	+1.3
4,085,156	-		GFF4072	0.51	+0.9
4,085,204	+		GFF4072	0.58	-1.0
4,085,205	-		GFF4072	0.58	-0.7
4,085,238	-		GFF4072	0.62	-0.0
4,085,252	+		GFF4072	0.64	+1.3
4,085,265	-		GFF4072	0.66	+0.2
4,085,266	+		GFF4072	0.66	-1.1
4,085,275	-		GFF4072	0.67	-0.3
4,085,280	+		GFF4072	0.68	-1.4
4,085,280	+		GFF4072	0.68	-0.3
4,085,280	+		GFF4072	0.68	-2.4
4,085,288	-		GFF4072	0.69	-0.5
4,085,288	-		GFF4072	0.69	+0.8
4,085,328	+		GFF4072	0.74	+0.2
4,085,336	-		GFF4072	0.75	-0.7
4,085,351	-		GFF4072	0.77	-0.4
4,085,374	+		GFF4072	0.80	-0.1
4,085,380	+		GFF4072	0.81	-1.8
4,085,389	-		GFF4072	0.82	-0.3
4,085,402	+		GFF4072	0.84	-0.2
4,085,410	-		GFF4072	0.85	-1.2
4,085,433	+		GFF4072	0.88	+0.5
4,085,436	-		GFF4072	0.88	-2.3
4,085,470	+				-1.2
4,085,470	+				+1.1
4,085,470	+				-0.6
4,085,470	+				+0.6
4,085,470	+				+0.5
4,085,470	+				+0.0
4,085,471	-				+0.6
4,085,475	+				-1.4
4,085,478	-				+0.0
4,085,478	-				+0.4
4,085,478	-				+0.2
4,085,478	-				-1.6
4,085,478	-				-0.5
4,085,478	-				-1.3
4,085,478	-				-1.8
4,085,485	+				-0.7
4,085,485	+				-0.3
4,085,493	-				+0.6
4,085,493	-				-1.6
4,085,493	-				+0.6
4,085,494	+				-0.4
4,085,499	+				+0.9
4,085,499	+				-0.7
4,085,502	-				-0.1
4,085,502	-				-1.3
4,085,502	-				-0.3
4,085,507	-				+0.5
4,085,507	-				+0.0
4,085,517	+				+0.9
4,085,517	+				+0.2
4,085,517	+				-0.2
4,085,517	+				-0.2
4,085,517	-				+1.5
4,085,520	-				-1.1
4,085,525	-				-0.3
4,085,531	-				+0.0
4,085,533	+				-1.5
4,085,533	+				-0.0
4,085,566	+				-0.7
4,085,569	-				+1.0
4,085,571	+				-2.6
4,085,574	-				-0.7
4,085,574	-				-0.4
4,085,574	-				-0.1
4,085,576	+				+0.6
4,085,579	-				-0.5
4,085,598	-				-0.4
4,085,616	+				+0.1
4,085,616	+				+0.7
4,085,616	+				+0.2
4,085,616	+				+1.2
4,085,616	+				-0.4
4,085,616	+				+0.1
4,085,616	+				-1.7
4,085,616	+				+0.0
4,085,616	+				+0.2
4,085,616	+				+0.0
4,085,616	+				+0.5
4,085,624	+				-0.4
4,085,624	-				+1.6
4,085,624	-				+0.2
4,085,624	-				+0.0
4,085,624	-				-0.7
4,085,624	-				-2.4
4,085,624	-				-0.8
4,085,624	-				-0.4
4,085,624	-				+0.2
4,085,625	+				+0.5
4,085,632	-				-0.4
4,085,633	-				-0.3
4,085,640	+				+0.5
4,085,640	+				-0.7
4,085,642	+				+0.2
4,085,681	-		GFF4073	0.20	+1.2
4,085,681	-		GFF4073	0.20	+0.9
4,085,681	-		GFF4073	0.20	-0.8
4,085,704	-		GFF4073	0.25	-0.4
4,085,706	+		GFF4073	0.26	-0.4
4,085,706	+		GFF4073	0.26	-0.6
4,085,706	+		GFF4073	0.26	+0.8
4,085,706	+		GFF4073	0.26	+0.3
4,085,706	+		GFF4073	0.26	+0.1
4,085,706	+		GFF4073	0.26	+0.6
4,085,706	+		GFF4073	0.26	-1.0
4,085,711	+		GFF4073	0.27	-0.9
4,085,714	-		GFF4073	0.28	-1.6
4,085,714	-		GFF4073	0.28	+0.5
4,085,716	+		GFF4073	0.28	+0.9
4,085,719	-		GFF4073	0.29	-2.4
4,085,719	-		GFF4073	0.29	-1.4
4,085,721	+		GFF4073	0.30	-0.3
4,085,721	+		GFF4073	0.30	+0.4
4,085,729	-		GFF4073	0.32	-0.3
4,085,753	+		GFF4073	0.38	+0.6
4,085,761	-		GFF4073	0.40	+0.9
4,085,762	+		GFF4073	0.40	+0.2