Strain Fitness in Sphingobium sp. HT1-2 around GFF4059

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,073,965	+		GFF4058	0.32	+1.6
4,073,965	+		GFF4058	0.32	-0.7
4,073,978	-		GFF4058	0.33	-0.9
4,073,980	+		GFF4058	0.34	+0.9
4,074,018	+		GFF4058	0.37	+0.4
4,074,048	+		GFF4058	0.39	+0.4
4,074,049	+		GFF4058	0.39	+0.3
4,074,049	+		GFF4058	0.39	+0.2
4,074,049	+		GFF4058	0.39	+0.9
4,074,056	-		GFF4058	0.39	+0.7
4,074,056	-		GFF4058	0.39	+0.9
4,074,056	-		GFF4058	0.39	+0.2
4,074,061	-		GFF4058	0.40	-2.0
4,074,062	-		GFF4058	0.40	-1.5
4,074,101	+		GFF4058	0.43	-0.2
4,074,110	+		GFF4058	0.44	-2.8
4,074,112	+		GFF4058	0.44	-0.0
4,074,119	-		GFF4058	0.44	-1.8
4,074,127	-		GFF4058	0.45	-0.3
4,074,149	-		GFF4058	0.47	-0.8
4,074,151	+		GFF4058	0.47	-0.2
4,074,153	+		GFF4058	0.47	-0.8
4,074,182	-		GFF4058	0.49	-0.3
4,074,192	+		GFF4058	0.50	-1.6
4,074,196	-		GFF4058	0.50	+0.6
4,074,203	+		GFF4058	0.51	-0.3
4,074,214	-		GFF4058	0.52	-2.5
4,074,216	+		GFF4058	0.52	-0.3
4,074,225	+		GFF4058	0.53	-1.0
4,074,233	-		GFF4058	0.53	+0.2
4,074,233	-		GFF4058	0.53	-0.9
4,074,289	-		GFF4058	0.58	+1.0
4,074,294	+		GFF4058	0.58	-0.8
4,074,294	+		GFF4058	0.58	-0.7
4,074,302	-		GFF4058	0.59	+0.5
4,074,302	-		GFF4058	0.59	+1.4
4,074,376	+		GFF4058	0.64	-1.2
4,074,376	+		GFF4058	0.64	-0.3
4,074,387	+		GFF4058	0.65	+1.0
4,074,390	-		GFF4058	0.65	-1.9
4,074,394	+		GFF4058	0.66	-0.5
4,074,394	+		GFF4058	0.66	+0.6
4,074,398	+		GFF4058	0.66	-0.3
4,074,398	+		GFF4058	0.66	+0.2
4,074,402	-		GFF4058	0.66	-0.7
4,074,424	-		GFF4058	0.68	-0.3
4,074,452	+		GFF4058	0.70	-2.2
4,074,472	-		GFF4058	0.72	+0.1
4,074,475	+		GFF4058	0.72	+0.0
4,074,490	+		GFF4058	0.73	-1.6
4,074,491	-		GFF4058	0.73	+1.4
4,074,498	-		GFF4058	0.74	-0.1
4,074,498	-		GFF4058	0.74	-2.1
4,074,513	+		GFF4058	0.75	+0.5
4,074,553	-		GFF4058	0.78	-1.1
4,074,555	+		GFF4058	0.78	-0.3
4,074,587	+		GFF4058	0.81	+1.4
4,074,636	-		GFF4058	0.84	-0.4
4,074,646	+		GFF4058	0.85	-1.6
4,074,654	-		GFF4058	0.86	-0.7
4,074,724	-				-0.3
4,074,724	-				+0.3
4,074,752	-				-1.7
4,074,756	+				-1.4
4,074,758	+				-0.3
4,074,762	+				+0.6
4,074,764	-				+0.2
4,074,773	+				-0.8
4,074,794	-				-1.4
4,074,805	+				+0.9
4,074,813	-				-0.5
4,074,813	-				-1.1
4,074,822	+				-0.9
4,074,824	-				+0.7
4,074,849	+				+0.2
4,074,856	+				-0.5
4,074,864	-				-0.7
4,074,866	+				+0.1
4,074,868	+				-1.2
4,074,868	+				-0.3
4,074,868	+				-0.2
4,074,868	+				-1.4
4,074,868	+				-0.3
4,074,868	+				-0.5
4,074,876	-				+0.3
4,074,876	-				-2.7
4,074,876	-				-0.8
4,074,876	-				-1.9
4,074,955	+				-0.2
4,074,959	+				-0.2
4,074,970	+				-0.8
4,074,970	+				-0.7
4,074,970	+				-0.3
4,074,970	+				+1.4
4,074,970	+				+1.0
4,074,970	+				+0.4
4,074,970	+				-0.5
4,074,973	+				+0.1
4,074,978	-				+0.5
4,074,980	+				+0.8
4,075,039	+		GFF4059	0.14	+0.7
4,075,075	+		GFF4059	0.21	-0.6
4,075,075	+		GFF4059	0.21	-0.7
4,075,075	+		GFF4059	0.21	+0.4
4,075,080	+		GFF4059	0.22	-1.8
4,075,081	+		GFF4059	0.22	+1.0
4,075,081	+		GFF4059	0.22	-0.8
4,075,081	+		GFF4059	0.22	-0.4
4,075,088	-		GFF4059	0.23	+0.9
4,075,089	-		GFF4059	0.23	-0.5
4,075,089	-		GFF4059	0.23	+1.3
4,075,089	-		GFF4059	0.23	+0.2
4,075,089	-		GFF4059	0.23	-0.1
4,075,089	-		GFF4059	0.23	+0.4
4,075,089	-		GFF4059	0.23	-0.6
4,075,089	-		GFF4059	0.23	-0.5
4,075,089	-		GFF4059	0.23	-0.7
4,075,089	-		GFF4059	0.23	+0.7
4,075,134	+		GFF4059	0.32	+0.5
4,075,142	-		GFF4059	0.33	-0.5
4,075,142	-		GFF4059	0.33	-0.3
4,075,144	+		GFF4059	0.34	+0.9
4,075,147	-		GFF4059	0.34	-0.5
4,075,170	+		GFF4059	0.38	-1.0
4,075,170	+		GFF4059	0.38	-2.2
4,075,178	-		GFF4059	0.40	-0.7
4,075,178	-		GFF4059	0.40	-1.4
4,075,185	-		GFF4059	0.41	-0.2
4,075,192	-		GFF4059	0.42	-0.8
4,075,209	-		GFF4059	0.45	+0.4
4,075,271	+		GFF4059	0.57	-0.7
4,075,279	-		GFF4059	0.58	-1.5
4,075,283	+		GFF4059	0.59	+0.4
4,075,308	-		GFF4059	0.63	-0.8
4,075,315	+		GFF4059	0.65	+0.5
4,075,332	+		GFF4059	0.68	-0.1
4,075,332	+		GFF4059	0.68	+1.3
4,075,332	+		GFF4059	0.68	-0.9
4,075,340	-		GFF4059	0.69	-0.7
4,075,340	-		GFF4059	0.69	-0.7
4,075,341	+		GFF4059	0.69	-1.5
4,075,349	-		GFF4059	0.71	+0.7
4,075,397	-		GFF4059	0.80	+0.9
4,075,397	-		GFF4059	0.80	-0.0
4,075,402	-		GFF4059	0.81	-0.1
4,075,412	-		GFF4059	0.82	-1.4
4,075,425	+		GFF4059	0.85	-1.0
4,075,425	+		GFF4059	0.85	+1.2
4,075,425	+		GFF4059	0.85	+1.9
4,075,425	+		GFF4059	0.85	-0.5
4,075,425	+		GFF4059	0.85	+0.7
4,075,425	+		GFF4059	0.85	-0.0
4,075,425	+		GFF4059	0.85	+1.0
4,075,425	+		GFF4059	0.85	-0.0
4,075,425	+		GFF4059	0.85	-1.4
4,075,425	+		GFF4059	0.85	-1.5
4,075,433	-		GFF4059	0.86	+0.3
4,075,433	-		GFF4059	0.86	-0.6
4,075,433	-		GFF4059	0.86	+0.9
4,075,433	-		GFF4059	0.86	-0.6
4,075,433	-		GFF4059	0.86	-0.7
4,075,433	-		GFF4059	0.86	-2.0
4,075,433	-		GFF4059	0.86	-2.4
4,075,433	-		GFF4059	0.86	-0.7
4,075,440	+		GFF4059	0.87	-1.8
4,075,464	+				-0.3
4,075,517	+				+0.3
4,075,517	+				+0.9
4,075,517	+				+1.5
4,075,517	+				-0.3
4,075,517	+				+1.5
4,075,535	+				+0.1
4,075,540	+				-0.8
4,075,540	+				+0.6
4,075,543	-				+0.0
4,075,543	-				+0.4
4,075,548	-				-1.4
4,075,552	-				-0.5
4,075,576	+		GFF4060	0.15	-0.1
4,075,602	-		GFF4060	0.20	-0.9
4,075,606	+		GFF4060	0.21	+0.4
4,075,619	-		GFF4060	0.23	-1.7
4,075,624	+		GFF4060	0.24	-1.2
4,075,630	+		GFF4060	0.26	+0.4
4,075,668	-		GFF4060	0.34	-0.9
4,075,670	+		GFF4060	0.34	-0.3
4,075,670	+		GFF4060	0.34	-2.8
4,075,670	+		GFF4060	0.34	-0.8
4,075,675	+		GFF4060	0.35	-1.7
4,075,677	-		GFF4060	0.35	-1.6
4,075,678	-		GFF4060	0.36	-0.9
4,075,678	-		GFF4060	0.36	-0.2
4,075,683	-		GFF4060	0.37	-1.9
4,075,683	-		GFF4060	0.37	-1.8
4,075,693	+		GFF4060	0.39	-0.8
4,075,693	+		GFF4060	0.39	-1.4
4,075,693	+		GFF4060	0.39	-0.3
4,075,693	+		GFF4060	0.39	-2.2
4,075,693	+		GFF4060	0.39	+0.6
4,075,693	+		GFF4060	0.39	-1.3
4,075,693	+		GFF4060	0.39	-0.3
4,075,693	+		GFF4060	0.39	-0.2
4,075,693	+		GFF4060	0.39	-2.7
4,075,693	+		GFF4060	0.39	-0.3
4,075,693	+		GFF4060	0.39	-0.6
4,075,701	-		GFF4060	0.40	+0.3
4,075,701	-		GFF4060	0.40	-1.8
4,075,701	-		GFF4060	0.40	+1.0
4,075,701	-		GFF4060	0.40	-0.6
4,075,701	-		GFF4060	0.40	-0.3
4,075,701	-		GFF4060	0.40	-1.5
4,075,701	-		GFF4060	0.40	-0.9
4,075,701	-		GFF4060	0.40	-1.3
4,075,742	+		GFF4060	0.49	-1.3
4,075,745	-		GFF4060	0.49	-0.7
4,075,750	-		GFF4060	0.50	-0.3
4,075,750	-		GFF4060	0.50	+0.2
4,075,761	+		GFF4060	0.53	-0.1
4,075,786	+		GFF4060	0.58	-2.3
4,075,794	-		GFF4060	0.59	-1.1
4,075,822	-		GFF4060	0.65	-1.2
4,075,832	-		GFF4060	0.67	-1.7
4,075,832	-		GFF4060	0.67	-0.3
4,075,832	-		GFF4060	0.67	-2.0
4,075,867	-		GFF4060	0.74	-0.6
4,075,869	+		GFF4060	0.75	-1.3
4,075,869	+		GFF4060	0.75	-0.6
4,075,874	+		GFF4060	0.76	-0.4
4,075,877	-		GFF4060	0.77	+1.2
4,075,877	-		GFF4060	0.77	-0.6
4,075,901	-		GFF4060	0.81	-0.9
4,075,919	+		GFF4060	0.85	-1.8
4,075,948	+				+0.7
4,075,950	+				-2.5
4,075,955	+				-0.2
4,075,974	-				-0.3
4,076,013	+				-1.4
4,076,022	-				+0.2