Strain Fitness in Sphingobium sp. HT1-2 around GFF4014

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,040,273	-		GFF4012	0.34	+0.2
4,040,332	+		GFF4012	0.44	-0.0
4,040,332	+		GFF4012	0.44	+1.6
4,040,340	-		GFF4012	0.46	-0.8
4,040,342	+		GFF4012	0.46	-0.9
4,040,423	+		GFF4012	0.60	+0.3
4,040,430	+		GFF4012	0.61	+0.3
4,040,430	+		GFF4012	0.61	+0.2
4,040,431	-		GFF4012	0.62	-2.1
4,040,438	-		GFF4012	0.63	+0.7
4,040,438	-		GFF4012	0.63	-0.6
4,040,462	+		GFF4012	0.67	-0.8
4,040,475	-		GFF4012	0.69	-0.2
4,040,475	-		GFF4012	0.69	-0.5
4,040,485	-		GFF4012	0.71	-1.1
4,040,503	+		GFF4012	0.74	-0.3
4,040,503	+		GFF4012	0.74	-1.9
4,040,511	-		GFF4012	0.76	-0.5
4,040,533	-		GFF4012	0.79	-0.3
4,040,536	-		GFF4012	0.80	+0.8
4,040,550	+		GFF4012	0.82	-0.4
4,040,550	+		GFF4012	0.82	+0.8
4,040,550	+		GFF4012	0.82	+0.2
4,040,558	-		GFF4012	0.84	+1.5
4,040,574	+		GFF4012	0.86	-1.5
4,040,577	-		GFF4012	0.87	-0.7
4,040,594	+				+0.1
4,040,594	+				+0.3
4,040,599	+				-0.4
4,040,613	+				-0.2
4,040,618	+				-1.8
4,040,618	+				+0.5
4,040,618	+				+0.4
4,040,618	+				+1.2
4,040,638	+				+0.1
4,040,643	+				-1.0
4,040,646	-				-0.3
4,040,646	-				-0.1
4,040,660	+				+0.6
4,040,660	+				-2.0
4,040,660	+				-0.8
4,040,660	+				+0.1
4,040,660	+				-0.4
4,040,660	+				+0.2
4,040,660	+				-0.1
4,040,660	+				-2.2
4,040,660	+				+0.6
4,040,660	+				+1.2
4,040,660	+				+0.6
4,040,660	+				+1.5
4,040,660	+				+0.5
4,040,660	+				-0.2
4,040,660	+				+0.5
4,040,660	+				-0.8
4,040,660	+				-0.7
4,040,660	+				-0.4
4,040,660	+				+0.5
4,040,660	+				+0.5
4,040,663	-				+0.7
4,040,665	+				-0.4
4,040,665	+				+0.6
4,040,665	+				-1.4
4,040,665	+				+1.0
4,040,668	-				-1.5
4,040,668	-				+0.2
4,040,668	-				+1.0
4,040,668	-				-1.2
4,040,668	-				-0.6
4,040,668	-				+0.5
4,040,668	-				-1.0
4,040,668	-				-2.0
4,040,668	-				-1.5
4,040,668	-				+0.0
4,040,668	-				-1.2
4,040,668	-				-0.5
4,040,668	-				-0.7
4,040,668	-				-0.2
4,040,668	-				+0.7
4,040,668	-				-1.3
4,040,668	-				-0.6
4,040,668	-				+1.0
4,040,673	-				+0.0
4,040,673	-				+1.5
4,040,673	-				-0.6
4,040,678	-				+0.1
4,040,688	-				-0.6
4,040,706	+		GFF4013	0.11	-0.1
4,040,719	+		GFF4013	0.13	+0.4
4,040,719	+		GFF4013	0.13	-0.4
4,040,719	+		GFF4013	0.13	+0.3
4,040,724	+		GFF4013	0.14	-0.2
4,040,724	+		GFF4013	0.14	+1.0
4,040,745	+		GFF4013	0.18	-1.7
4,040,750	+		GFF4013	0.18	+0.8
4,040,755	+		GFF4013	0.19	-0.1
4,040,755	+		GFF4013	0.19	+0.5
4,040,763	-		GFF4013	0.21	-1.0
4,040,763	-		GFF4013	0.21	-1.1
4,040,795	+		GFF4013	0.27	+0.4
4,040,795	+		GFF4013	0.27	+0.7
4,040,802	-		GFF4013	0.28	+0.6
4,040,808	+		GFF4013	0.29	-0.2
4,040,808	+		GFF4013	0.29	+0.5
4,040,809	+		GFF4013	0.29	-0.3
4,040,816	-		GFF4013	0.30	-0.8
4,040,824	+		GFF4013	0.32	+0.1
4,040,883	+		GFF4013	0.43	+1.7
4,040,891	-		GFF4013	0.44	-0.2
4,040,900	-		GFF4013	0.46	-0.5
4,040,911	+		GFF4013	0.48	+1.2
4,040,919	+		GFF4013	0.49	+0.6
4,040,919	+		GFF4013	0.49	-1.9
4,040,919	-		GFF4013	0.49	-0.7
4,040,919	-		GFF4013	0.49	-0.0
4,040,926	-		GFF4013	0.50	+0.4
4,040,926	-		GFF4013	0.50	+0.0
4,040,927	-		GFF4013	0.51	-0.4
4,040,927	-		GFF4013	0.51	-0.4
4,040,943	+		GFF4013	0.53	+0.4
4,040,943	+		GFF4013	0.53	+0.2
4,040,963	-		GFF4013	0.57	+0.0
4,040,969	+		GFF4013	0.58	-1.0
4,040,994	+		GFF4013	0.63	+0.7
4,040,994	+		GFF4013	0.63	+0.4
4,040,999	+		GFF4013	0.64	-1.0
4,040,999	+		GFF4013	0.64	-0.6
4,041,002	-		GFF4013	0.64	-1.7
4,041,002	-		GFF4013	0.64	+0.9
4,041,007	-		GFF4013	0.65	-0.3
4,041,007	-		GFF4013	0.65	+0.0
4,041,021	+		GFF4013	0.68	+1.2
4,041,029	-		GFF4013	0.69	+0.9
4,041,041	+		GFF4013	0.71	-1.2
4,041,041	+		GFF4013	0.71	-0.2
4,041,041	+		GFF4013	0.71	+0.5
4,041,041	+		GFF4013	0.71	-0.3
4,041,048	+		GFF4013	0.72	-0.3
4,041,048	+		GFF4013	0.72	-0.3
4,041,049	-		GFF4013	0.73	+0.6
4,041,049	-		GFF4013	0.73	-0.6
4,041,049	-		GFF4013	0.73	-1.3
4,041,049	-		GFF4013	0.73	-3.0
4,041,049	-		GFF4013	0.73	+0.2
4,041,049	-		GFF4013	0.73	-2.2
4,041,049	-		GFF4013	0.73	+0.3
4,041,049	-		GFF4013	0.73	+0.2
4,041,049	-		GFF4013	0.73	+0.1
4,041,049	-		GFF4013	0.73	-0.1
4,041,049	-		GFF4013	0.73	+0.8
4,041,049	-		GFF4013	0.73	-0.6
4,041,049	-		GFF4013	0.73	-0.1
4,041,051	+		GFF4013	0.73	-0.0
4,041,056	+		GFF4013	0.74	-0.9
4,041,056	-		GFF4013	0.74	-0.3
4,041,059	-		GFF4013	0.74	-2.3
4,041,064	-		GFF4013	0.75	-1.7
4,041,064	-		GFF4013	0.75	-1.3
4,041,071	+		GFF4013	0.77	-1.5
4,041,071	+		GFF4013	0.77	+0.8
4,041,071	+		GFF4013	0.77	-0.7
4,041,071	+		GFF4013	0.77	+1.9
4,041,071	+		GFF4013	0.77	-1.3
4,041,071	+		GFF4013	0.77	-0.1
4,041,076	+		GFF4013	0.78	+1.2
4,041,076	+		GFF4013	0.78	-0.2
4,041,084	-		GFF4013	0.79	-0.2
4,041,092	+		GFF4013	0.80	-0.3
4,041,097	+		GFF4013	0.81	+0.4
4,041,097	+		GFF4013	0.81	-0.5
4,041,097	+		GFF4013	0.81	+0.2
4,041,097	+		GFF4013	0.81	-0.4
4,041,118	+		GFF4013	0.85	-1.7
4,041,118	-		GFF4013	0.85	-1.6
4,041,119	-		GFF4013	0.85	-2.2
4,041,120	+		GFF4013	0.86	-0.8
4,041,136	-		GFF4013	0.88	+0.2
4,041,159	-				-0.9
4,041,168	+				-0.5
4,041,168	+				-0.9
4,041,176	-				+1.3
4,041,178	+				-2.6
4,041,178	+				-0.3
4,041,178	-				-0.8
4,041,186	-				-0.8
4,041,186	-				+0.4
4,041,186	-				-0.1
4,041,186	-				+0.6
4,041,186	-				-0.1
4,041,194	+				+1.4
4,041,202	-				+1.3
4,041,209	-				-1.5
4,041,211	-				+1.0
4,041,211	-				+0.3
4,041,211	-				+2.0
4,041,211	-				+0.2
4,041,213	+				-1.1
4,041,221	-				-0.6
4,041,233	-				+0.9
4,041,233	-				+1.7
4,041,254	-				-1.3
4,041,261	+		GFF4014	0.10	-0.5
4,041,275	-		GFF4014	0.12	-0.1
4,041,281	-		GFF4014	0.14	-0.8
4,041,282	+		GFF4014	0.14	-2.3
4,041,282	+		GFF4014	0.14	-1.4
4,041,282	+		GFF4014	0.14	-0.5
4,041,295	-		GFF4014	0.16	+0.3
4,041,295	-		GFF4014	0.16	-0.3
4,041,295	-		GFF4014	0.16	-0.3
4,041,295	-		GFF4014	0.16	-3.2
4,041,321	+		GFF4014	0.20	-1.2
4,041,321	+		GFF4014	0.20	+0.6
4,041,321	+		GFF4014	0.20	-0.2
4,041,321	+		GFF4014	0.20	+0.2
4,041,321	-		GFF4014	0.20	+1.1
4,041,323	+		GFF4014	0.21	+0.5
4,041,329	-		GFF4014	0.22	-0.4
4,041,329	-		GFF4014	0.22	-2.2
4,041,329	-		GFF4014	0.22	+1.6
4,041,329	-		GFF4014	0.22	+0.3
4,041,331	-		GFF4014	0.22	-0.8
4,041,340	+		GFF4014	0.24	-0.7
4,041,348	-		GFF4014	0.25	+0.7
4,041,348	-		GFF4014	0.25	-2.7
4,041,348	-		GFF4014	0.25	+0.6
4,041,355	+		GFF4014	0.26	+0.1
4,041,355	+		GFF4014	0.26	-0.0
4,041,355	+		GFF4014	0.26	-0.6
4,041,355	+		GFF4014	0.26	-0.6
4,041,355	+		GFF4014	0.26	-0.4
4,041,355	+		GFF4014	0.26	-2.2
4,041,355	+		GFF4014	0.26	-0.9
4,041,355	+		GFF4014	0.26	-0.1
4,041,355	+		GFF4014	0.26	-1.4
4,041,355	+		GFF4014	0.26	-0.4
4,041,355	+		GFF4014	0.26	-0.6
4,041,355	+		GFF4014	0.26	-1.0
4,041,355	+		GFF4014	0.26	-1.3
4,041,355	+		GFF4014	0.26	+1.1
4,041,355	+		GFF4014	0.26	+0.1
4,041,360	+		GFF4014	0.27	+0.6
4,041,360	+		GFF4014	0.27	+0.5
4,041,363	-		GFF4014	0.28	+0.0
4,041,363	-		GFF4014	0.28	+0.0
4,041,363	-		GFF4014	0.28	+0.5
4,041,363	-		GFF4014	0.28	+0.0
4,041,363	-		GFF4014	0.28	-1.6
4,041,363	-		GFF4014	0.28	-0.2
4,041,363	-		GFF4014	0.28	-0.3
4,041,363	-		GFF4014	0.28	+1.2
4,041,363	-		GFF4014	0.28	-0.2
4,041,363	-		GFF4014	0.28	-0.2
4,041,363	-		GFF4014	0.28	+0.3
4,041,363	-		GFF4014	0.28	-0.7
4,041,363	-		GFF4014	0.28	+1.9
4,041,363	-		GFF4014	0.28	-0.8
4,041,363	-		GFF4014	0.28	-0.3
4,041,363	-		GFF4014	0.28	+0.2
4,041,380	+		GFF4014	0.31	-0.6
4,041,380	+		GFF4014	0.31	+0.2
4,041,387	+		GFF4014	0.32	-0.8
4,041,387	+		GFF4014	0.32	+0.1
4,041,388	-		GFF4014	0.32	+0.2
4,041,388	-		GFF4014	0.32	+0.7
4,041,388	-		GFF4014	0.32	-0.2
4,041,388	-		GFF4014	0.32	-0.9
4,041,388	-		GFF4014	0.32	+0.0
4,041,388	-		GFF4014	0.32	+0.3
4,041,453	+		GFF4014	0.43	-0.1
4,041,461	-		GFF4014	0.45	-0.2
4,041,476	+		GFF4014	0.47	+0.2
4,041,485	+		GFF4014	0.49	-2.0
4,041,493	-		GFF4014	0.50	-0.0
4,041,495	+		GFF4014	0.51	+0.4
4,041,495	+		GFF4014	0.51	-2.2
4,041,495	+		GFF4014	0.51	-1.2
4,041,495	+		GFF4014	0.51	-0.2
4,041,495	+		GFF4014	0.51	-0.0
4,041,497	+		GFF4014	0.51	-1.3
4,041,498	-		GFF4014	0.51	-1.1
4,041,503	-		GFF4014	0.52	+0.1
4,041,503	-		GFF4014	0.52	+0.3
4,041,503	-		GFF4014	0.52	+0.1
4,041,503	-		GFF4014	0.52	-0.6
4,041,503	-		GFF4014	0.52	-0.8
4,041,503	-		GFF4014	0.52	+0.9
4,041,503	-		GFF4014	0.52	+1.2
4,041,505	+		GFF4014	0.52	-1.9
4,041,530	-		GFF4014	0.57	+0.7
4,041,538	-		GFF4014	0.58	+0.4
4,041,578	+		GFF4014	0.65	-0.2
4,041,670	+		GFF4014	0.81	-0.1
4,041,670	+		GFF4014	0.81	-0.4
4,041,674	+		GFF4014	0.82	+1.5
4,041,675	+		GFF4014	0.82	-0.7
4,041,675	+		GFF4014	0.82	+1.2
4,041,680	+		GFF4014	0.83	+0.5
4,041,708	+		GFF4014	0.88	-1.6
4,041,750	+				+0.1
4,041,750	+				+0.5
4,041,750	+				+0.6
4,041,750	+				-1.4
4,041,750	+				+1.0
4,041,755	+				+0.0
4,041,755	+				+1.8
4,041,757	+				+1.0
4,041,760	+				+0.5
4,041,760	+				-0.2
4,041,841	+		GFF4015	0.35	-0.4
4,041,841	+		GFF4015	0.35	-0.5
4,041,843	+		GFF4015	0.37	-0.4
4,041,851	-		GFF4015	0.41	+0.3
4,041,851	-		GFF4015	0.41	+0.0
4,041,882	+		GFF4015	0.58	-1.6
4,041,882	+		GFF4015	0.58	+1.3
4,041,890	-		GFF4015	0.62	-1.0
4,041,890	-		GFF4015	0.62	-2.2
4,041,892	+		GFF4015	0.63	-0.4
4,041,908	+		GFF4015	0.72	+1.0
4,041,908	+		GFF4015	0.72	+0.5
4,041,914	-		GFF4015	0.75	-0.3
4,041,927	-		GFF4015	0.82	+0.7
4,041,930	+		GFF4015	0.83	-0.0
4,041,937	+		GFF4015	0.87	-1.6
4,041,945	-				+1.2
4,041,958	+				-1.3
4,041,966	-				+0.6
4,041,973	+				+0.0
4,041,973	+				-2.7
4,041,973	+				-0.3
4,041,973	+				-1.5
4,041,973	+				+0.9
4,041,973	+				-1.0
4,041,973	+				-0.1
4,041,973	+				-1.6
4,041,973	+				+0.1
4,041,973	+				-0.5
4,041,973	+				-0.6
4,041,975	+				-0.6
4,041,981	-				-1.1
4,041,981	-				+1.5
4,041,981	-				+1.3
4,041,985	+		GFF4016	0.11	+1.5
4,041,985	+		GFF4016	0.11	-2.0
4,041,985	+		GFF4016	0.11	+0.2
4,041,985	+		GFF4016	0.11	-2.0
4,041,985	+		GFF4016	0.11	-1.3
4,041,985	+		GFF4016	0.11	-0.2
4,041,988	-		GFF4016	0.12	-1.8
4,041,990	+		GFF4016	0.13	-0.9
4,041,990	+		GFF4016	0.13	+0.2
4,041,990	+		GFF4016	0.13	+0.2
4,041,990	+		GFF4016	0.13	+0.4
4,041,993	-		GFF4016	0.15	-0.4
4,041,993	-		GFF4016	0.15	-0.1
4,041,993	-		GFF4016	0.15	+0.7
4,041,993	-		GFF4016	0.15	+0.7
4,041,995	+		GFF4016	0.16	+0.6
4,042,041	-		GFF4016	0.36	+0.2
4,042,090	-		GFF4016	0.58	+0.6
4,042,092	-		GFF4016	0.59	+1.3
4,042,097	-		GFF4016	0.61	-0.0
4,042,097	-		GFF4016	0.61	-1.0
4,042,103	-		GFF4016	0.64	+0.8
4,042,103	-		GFF4016	0.64	-0.3
4,042,118	+		GFF4016	0.70	+0.0
4,042,130	+		GFF4016	0.76	-0.4
4,042,136	-		GFF4016	0.78	-1.7
4,042,136	-		GFF4016	0.78	-1.7
4,042,149	+		GFF4016	0.84	-1.5
4,042,167	-				+0.7
4,042,179	+				-0.2
4,042,181	+				-1.5
4,042,181	+				-0.6
4,042,186	+				+0.1
4,042,187	-				+0.0
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