Strain Fitness in Sphingobium sp. HT1-2 around GFF4

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,045	-				-0.1
2,063	-				-1.2
2,071	+				-1.2
2,071	+				+0.9
2,071	+				-1.2
2,071	+				-0.5
2,071	+				+0.7
2,071	+				+0.3
2,071	+				-0.2
2,071	+				+0.1
2,071	+				-0.5
2,071	+				+0.5
2,071	+				+0.4
2,071	+				-2.4
2,071	+				-1.2
2,071	+				-1.1
2,071	+				-1.5
2,071	+				-1.2
2,079	-				-1.5
2,079	-				+0.3
2,079	-				-1.1
2,079	-				-0.8
2,079	-				-2.4
2,079	-				-0.4
2,079	-				+0.1
2,079	-				-1.4
2,079	-				-1.5
2,079	-				-1.5
2,079	-				-0.4
2,079	-				-0.7
2,079	-				+0.3
2,079	-				-0.3
2,079	-				+0.4
2,079	-				-0.4
2,079	-				-0.6
2,079	-				+0.5
2,079	-				-1.6
2,079	-				+0.3
2,079	-				+0.3
2,079	-				-2.9
2,079	-				-1.0
2,079	-				-1.2
2,079	-				+1.0
2,079	-				-1.6
2,079	-				+0.6
2,079	-				+0.4
2,079	-				-1.0
2,079	-				+0.0
2,079	-				-1.0
2,079	-				+1.2
2,079	-				-0.2
2,079	-				+1.0
2,079	-				+0.6
2,079	-				-0.2
2,081	+				-2.7
2,081	-				+1.4
2,088	+				+0.4
2,113	-				-0.7
2,118	-				+0.6
2,174	-				+0.2
2,174	-				+0.7
2,177	+				-2.4
2,226	-				-1.3
2,238	-		GFF3	0.11	-0.0
2,238	-		GFF3	0.11	-0.0
2,270	-		GFF3	0.16	+0.1
2,270	-		GFF3	0.16	-1.7
2,278	+		GFF3	0.17	+0.0
2,293	+		GFF3	0.19	-0.2
2,293	+		GFF3	0.19	+0.2
2,293	+		GFF3	0.19	-1.2
2,296	-		GFF3	0.20	-0.1
2,300	+		GFF3	0.20	+0.5
2,301	+		GFF3	0.20	-1.5
2,301	+		GFF3	0.20	-0.9
2,301	+		GFF3	0.20	+0.6
2,301	-		GFF3	0.20	+0.9
2,301	-		GFF3	0.20	-0.2
2,301	-		GFF3	0.20	+0.9
2,308	-		GFF3	0.21	+0.2
2,309	-		GFF3	0.21	-1.3
2,309	-		GFF3	0.21	+0.5
2,332	+		GFF3	0.25	+0.8
2,332	+		GFF3	0.25	+0.3
2,332	+		GFF3	0.25	-1.0
2,332	+		GFF3	0.25	-1.7
2,332	+		GFF3	0.25	-0.5
2,332	+		GFF3	0.25	+1.6
2,335	-		GFF3	0.25	+0.1
2,340	-		GFF3	0.26	+0.9
2,340	-		GFF3	0.26	-0.7
2,340	-		GFF3	0.26	-1.7
2,340	-		GFF3	0.26	+0.7
2,347	-		GFF3	0.27	-1.7
2,367	+		GFF3	0.30	+0.9
2,367	+		GFF3	0.30	+0.7
2,367	+		GFF3	0.30	+1.0
2,367	+		GFF3	0.30	-0.2
2,367	+		GFF3	0.30	-0.7
2,375	-		GFF3	0.31	-0.2
2,375	-		GFF3	0.31	+0.3
2,375	-		GFF3	0.31	-0.2
2,375	-		GFF3	0.31	+0.6
2,375	-		GFF3	0.31	+0.8
2,375	-		GFF3	0.31	+1.9
2,375	-		GFF3	0.31	-3.1
2,377	+		GFF3	0.31	-0.2
2,385	-		GFF3	0.32	-2.7
2,390	+		GFF3	0.33	+0.1
2,411	-		GFF3	0.36	-0.0
2,487	+		GFF3	0.46	+0.0
2,487	-		GFF3	0.46	-2.5
2,492	+		GFF3	0.47	-0.9
2,494	+		GFF3	0.47	+0.7
2,502	-		GFF3	0.48	-0.2
2,502	-		GFF3	0.48	+0.2
2,502	-		GFF3	0.48	-0.2
2,513	-		GFF3	0.50	+0.1
2,553	+		GFF3	0.56	-0.0
2,561	-		GFF3	0.57	+1.1
2,563	+		GFF3	0.57	+0.2
2,563	+		GFF3	0.57	-0.7
2,563	+		GFF3	0.57	+0.1
2,563	+		GFF3	0.57	-0.5
2,563	+		GFF3	0.57	+0.9
2,563	+		GFF3	0.57	-0.6
2,563	+		GFF3	0.57	+0.8
2,566	-		GFF3	0.57	+0.1
2,566	-		GFF3	0.57	-0.0
2,566	-		GFF3	0.57	+0.4
2,571	-		GFF3	0.58	+0.7
2,571	-		GFF3	0.58	-0.2
2,571	-		GFF3	0.58	-1.0
2,571	-		GFF3	0.58	+0.0
2,590	-		GFF3	0.61	+1.1
2,606	-		GFF3	0.63	-0.8
2,608	+		GFF3	0.63	-1.4
2,618	+		GFF3	0.65	-1.1
2,618	+		GFF3	0.65	-1.7
2,618	+		GFF3	0.65	+1.1
2,618	+		GFF3	0.65	-0.9
2,618	+		GFF3	0.65	+0.1
2,626	+		GFF3	0.66	+0.8
2,626	-		GFF3	0.66	-1.8
2,626	-		GFF3	0.66	-0.4
2,626	-		GFF3	0.66	-0.0
2,626	-		GFF3	0.66	+0.9
2,627	+		GFF3	0.66	-0.7
2,640	+		GFF3	0.68	-0.8
2,648	-		GFF3	0.69	+0.6
2,654	+		GFF3	0.70	+0.8
2,662	+		GFF3	0.71	+0.0
2,662	+		GFF3	0.71	-1.4
2,662	+		GFF3	0.71	+0.2
2,662	-		GFF3	0.71	-2.0
2,670	-		GFF3	0.72	-0.5
2,670	-		GFF3	0.72	+0.6
2,675	-		GFF3	0.73	+0.8
2,680	-		GFF3	0.73	+0.6
2,702	+		GFF3	0.76	+0.6
2,702	+		GFF3	0.76	+0.7
2,702	+		GFF3	0.76	-0.6
2,713	+		GFF3	0.78	-1.7
2,718	+		GFF3	0.79	-1.2
2,723	+		GFF3	0.79	-0.6
2,736	-		GFF3	0.81	-0.6
2,737	+		GFF3	0.81	-0.7
2,744	+		GFF3	0.82	+0.6
2,752	-		GFF3	0.83	-1.2
2,758	+		GFF3	0.84	+0.2
2,758	+		GFF3	0.84	-1.2
2,766	-		GFF3	0.85	-0.5
2,766	-		GFF3	0.85	-0.2
2,766	-		GFF3	0.85	-1.9
2,783	+		GFF3	0.88	-0.2
2,783	+		GFF3	0.88	-0.6
2,783	+		GFF3	0.88	+1.2
2,783	+		GFF3	0.88	+0.8
2,783	+		GFF3	0.88	+1.3
2,783	+		GFF3	0.88	+0.8
2,783	+		GFF3	0.88	-1.7
2,783	+		GFF3	0.88	+0.0
2,783	+		GFF3	0.88	-0.3
2,783	+		GFF3	0.88	-0.0
2,783	+		GFF3	0.88	-1.1
2,783	+		GFF3	0.88	-1.3
2,783	+		GFF3	0.88	+0.2
2,783	+		GFF3	0.88	-0.5
2,791	+		GFF3	0.89	-2.0
2,791	-		GFF3	0.89	-1.6
2,791	-		GFF3	0.89	+0.4
2,791	-		GFF3	0.89	-0.1
2,791	-		GFF3	0.89	+0.2
2,791	-		GFF3	0.89	+0.1
2,791	-		GFF3	0.89	+0.5
2,791	-		GFF3	0.89	-0.6
2,801	+				+1.0
2,810	+				-1.5
2,845	-				-0.2
2,894	+				-0.9
2,895	+				+0.8
2,900	+				-1.6
2,900	-				-1.2
2,902	+				+0.1
2,902	-				-1.8
2,918	+				-2.0
2,931	-				+0.4
2,931	-				-1.1
2,937	+				+0.4
3,007	-				-0.3
3,017	+				+0.6
3,021	+				-1.1
3,038	+				-1.4
3,040	-				+0.7
3,043	+				+0.6
3,043	+				-0.1
3,043	+				-0.4
3,043	+				-0.5
3,043	+				-1.3
3,043	+				+0.2
3,043	+				+0.6
3,043	+				+0.8
3,043	+				-0.6
3,043	+				-1.2
3,046	-				+0.2
3,046	-				+1.8
3,051	-				-1.4
3,051	-				+0.1
3,051	-				-0.0
3,051	-				-0.1
3,077	+		GFF4	0.18	+1.1
3,077	+		GFF4	0.18	+0.7
3,085	-		GFF4	0.20	-2.0
3,090	-		GFF4	0.22	+2.1
3,092	+		GFF4	0.22	+1.3
3,163	-		GFF4	0.44	-1.7
3,164	+		GFF4	0.44	-0.8
3,164	+		GFF4	0.44	+0.6
3,164	+		GFF4	0.44	-0.8
3,165	+		GFF4	0.44	-0.2
3,198	-		GFF4	0.54	-0.5
3,209	-		GFF4	0.58	-1.9
3,218	+		GFF4	0.60	-3.5
3,226	-		GFF4	0.63	-1.3
3,226	-		GFF4	0.63	+0.4
3,264	+		GFF4	0.74	-0.5
3,270	+		GFF4	0.76	-0.4
3,308	-		GFF4	0.88	-1.8
3,308	-		GFF4	0.88	-0.9
3,317	-				+0.9
3,322	-				-1.4
3,435	-		GFF5	0.28	-2.2
3,493	+		GFF5	0.47	-2.2
3,508	+		GFF5	0.52	-2.4
3,508	+		GFF5	0.52	-2.0
3,528	+		GFF5	0.59	-0.5
3,528	+		GFF5	0.59	+0.3
3,540	+		GFF5	0.63	-1.4
3,540	+		GFF5	0.63	-1.5
3,540	+		GFF5	0.63	-1.9
3,651	+				-0.3
3,657	-				+0.1
3,740	-				-2.0
3,745	-				-3.0
3,774	-				-1.8
3,776	+				+0.4
3,776	+				-0.2
3,805	+				+0.8
3,809	+				-1.7
3,811	+				+0.1
3,824	+				-1.8
3,824	+				-1.2
3,824	+				-0.6
3,824	+				+0.5
3,824	+				-0.4
3,825	-				+0.3
3,829	+				+0.0
3,829	+				+1.9
3,832	-				-0.0
3,837	-				+0.3
3,838	-				-1.8
3,838	-				+0.8
3,838	-				-1.8
3,844	+				+0.8
3,844	+				-0.7
3,852	-				+0.9
3,855	-				-0.5
3,885	-				-0.8
3,893	+				-1.1
3,898	+				-0.5
3,898	+				-0.4
3,898	+				+0.5
3,903	+				-0.8
3,906	-				-1.4
3,951	-				-0.4
3,955	+				+0.5
3,958	-				+0.4
3,963	-				-1.0
3,970	+				-1.5
3,970	+				+0.8
3,970	-				+0.3
3,978	+				-0.5
3,978	-				-0.2
3,992	-				-0.6
3,993	-				-1.1
4,004	+				-1.6
4,020	-				-0.9
4,036	+				-2.6
4,043	-				-1.5
4,078	+				-0.5
4,078	+				-0.5
4,083	+				+0.4
4,086	-				-0.5
4,086	-				-0.7
4,086	-				+0.1
4,086	-				-0.1
4,088	+				-2.7
4,096	-				-0.9
4,109	+				-0.6
4,117	-				-0.8
4,137	+		GFF6	0.25	-0.5
4,153	-		GFF6	0.37	-0.2
4,164	-		GFF6	0.46	+1.0
4,178	+		GFF6	0.57	-0.5
4,209	+		GFF6	0.82	-0.1
4,212	-		GFF6	0.84	-0.7
4,212	-		GFF6	0.84	+0.3
4,212	-		GFF6	0.84	-2.5
4,212	-		GFF6	0.84	+0.6
4,217	-		GFF6	0.88	-2.7
4,217	-		GFF6	0.88	-0.3
4,219	+				-0.2
4,247	-				-0.7
4,292	+				+0.8
4,294	-				-1.2
4,302	-				-1.7
4,309	+				+0.7
4,314	+				+0.5
4,314	+				+0.1
4,316	+				-2.4
4,317	-				-0.3
4,317	-				+0.4
4,322	-				-0.8
4,322	-				-0.6
4,322	-				+0.5
4,322	-				+0.0