Strain Fitness in Sphingobium sp. HT1-2 around GFF3975

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,007,748	+		GFF3973	0.30	-0.6
4,007,763	+		GFF3973	0.32	-0.5
4,007,771	-		GFF3973	0.33	+1.3
4,007,806	+		GFF3973	0.39	-0.7
4,007,806	+		GFF3973	0.39	-0.5
4,007,814	-		GFF3973	0.40	-1.1
4,007,817	+		GFF3973	0.40	-0.6
4,007,825	-		GFF3973	0.41	-0.1
4,007,826	-		GFF3973	0.42	-0.7
4,007,826	-		GFF3973	0.42	+0.6
4,007,835	-		GFF3973	0.43	-0.5
4,007,837	+		GFF3973	0.43	+1.4
4,007,838	+		GFF3973	0.43	+0.1
4,007,841	-		GFF3973	0.44	+0.4
4,007,848	+		GFF3973	0.45	-0.6
4,007,848	+		GFF3973	0.45	-0.9
4,007,848	+		GFF3973	0.45	-0.4
4,007,848	+		GFF3973	0.45	-0.6
4,007,848	+		GFF3973	0.45	+0.1
4,007,855	+		GFF3973	0.46	-0.2
4,007,855	+		GFF3973	0.46	+0.2
4,007,855	+		GFF3973	0.46	+0.3
4,007,856	-		GFF3973	0.46	-0.1
4,007,856	-		GFF3973	0.46	-1.2
4,007,856	-		GFF3973	0.46	-1.3
4,007,856	-		GFF3973	0.46	+1.3
4,007,856	-		GFF3973	0.46	-1.5
4,007,856	-		GFF3973	0.46	+0.6
4,007,858	+		GFF3973	0.46	-0.8
4,007,858	+		GFF3973	0.46	-0.9
4,007,861	-		GFF3973	0.47	+0.6
4,007,863	+		GFF3973	0.47	-1.0
4,007,863	+		GFF3973	0.47	+0.7
4,007,863	+		GFF3973	0.47	+1.8
4,007,863	+		GFF3973	0.47	-0.1
4,007,863	+		GFF3973	0.47	-0.4
4,007,863	+		GFF3973	0.47	-0.2
4,007,863	+		GFF3973	0.47	-2.4
4,007,863	+		GFF3973	0.47	-2.4
4,007,863	+		GFF3973	0.47	+0.7
4,007,863	+		GFF3973	0.47	-1.6
4,007,863	+		GFF3973	0.47	-0.4
4,007,863	-		GFF3973	0.47	-1.3
4,007,866	-		GFF3973	0.47	-0.6
4,007,866	-		GFF3973	0.47	-1.6
4,007,871	-		GFF3973	0.48	+0.7
4,007,871	-		GFF3973	0.48	-1.3
4,007,871	-		GFF3973	0.48	+0.8
4,007,871	-		GFF3973	0.48	+1.8
4,007,871	-		GFF3973	0.48	-0.4
4,007,871	-		GFF3973	0.48	+0.4
4,007,871	-		GFF3973	0.48	+0.3
4,007,871	-		GFF3973	0.48	-0.7
4,007,871	-		GFF3973	0.48	+0.6
4,007,871	-		GFF3973	0.48	-0.1
4,007,871	-		GFF3973	0.48	-2.6
4,007,871	-		GFF3973	0.48	-1.8
4,007,871	-		GFF3973	0.48	-2.2
4,007,875	-		GFF3973	0.49	-0.1
4,007,894	+		GFF3973	0.52	+1.1
4,007,899	+		GFF3973	0.52	+0.2
4,007,899	+		GFF3973	0.52	-0.4
4,007,904	-		GFF3973	0.53	-0.4
4,007,906	+		GFF3973	0.53	-0.2
4,007,907	-		GFF3973	0.54	+0.7
4,007,927	+		GFF3973	0.56	+0.2
4,007,935	-		GFF3973	0.58	+0.9
4,007,946	+		GFF3973	0.59	-0.7
4,007,946	+		GFF3973	0.59	+0.3
4,007,946	+		GFF3973	0.59	+0.2
4,007,946	+		GFF3973	0.59	-0.8
4,007,954	-		GFF3973	0.60	+0.5
4,007,954	-		GFF3973	0.60	+0.6
4,007,956	+		GFF3973	0.61	-1.6
4,007,956	+		GFF3973	0.61	+1.4
4,007,956	+		GFF3973	0.61	-0.3
4,008,028	+		GFF3973	0.71	+0.9
4,008,028	+		GFF3973	0.71	-1.8
4,008,050	+		GFF3973	0.75	-0.8
4,008,053	+		GFF3973	0.75	+0.4
4,008,053	-		GFF3973	0.75	-1.0
4,008,061	-		GFF3973	0.76	-0.1
4,008,063	-		GFF3973	0.77	-0.6
4,008,071	+		GFF3973	0.78	+0.3
4,008,071	+		GFF3973	0.78	+0.1
4,008,075	+		GFF3973	0.78	+1.8
4,008,075	+		GFF3973	0.78	-0.1
4,008,075	+		GFF3973	0.78	+0.5
4,008,075	+		GFF3973	0.78	-0.4
4,008,081	-		GFF3973	0.79	+0.4
4,008,083	-		GFF3973	0.79	-1.4
4,008,083	-		GFF3973	0.79	-0.1
4,008,109	+		GFF3973	0.83	+0.3
4,008,121	+		GFF3973	0.85	+0.3
4,008,129	-		GFF3973	0.86	-1.9
4,008,163	+				-0.3
4,008,172	-				-0.2
4,008,181	+				+0.5
4,008,191	+				+1.2
4,008,195	+				+1.2
4,008,209	+				-0.7
4,008,211	+				+0.3
4,008,213	+				-0.3
4,008,219	-				-1.3
4,008,219	-				-0.6
4,008,219	-				-2.0
4,008,219	-				-2.9
4,008,219	-				+0.1
4,008,221	-				+0.2
4,008,233	-				+0.1
4,008,317	+		GFF3974	0.16	+0.5
4,008,325	-		GFF3974	0.18	-0.3
4,008,337	+		GFF3974	0.20	-0.2
4,008,375	+		GFF3974	0.28	-1.8
4,008,375	+		GFF3974	0.28	+0.6
4,008,383	-		GFF3974	0.29	-1.7
4,008,416	+		GFF3974	0.36	-0.2
4,008,429	+		GFF3974	0.38	+1.0
4,008,437	-		GFF3974	0.40	+0.9
4,008,445	+		GFF3974	0.42	-0.3
4,008,464	+		GFF3974	0.45	+0.9
4,008,472	-		GFF3974	0.47	-2.6
4,008,476	+		GFF3974	0.48	-0.2
4,008,482	-		GFF3974	0.49	-0.2
4,008,484	-		GFF3974	0.49	-1.1
4,008,484	-		GFF3974	0.49	-0.5
4,008,495	+		GFF3974	0.52	+0.6
4,008,495	+		GFF3974	0.52	+1.1
4,008,511	-		GFF3974	0.55	-1.1
4,008,513	-		GFF3974	0.55	-0.4
4,008,527	+		GFF3974	0.58	-0.3
4,008,528	+		GFF3974	0.58	-2.6
4,008,553	+		GFF3974	0.63	-2.8
4,008,561	-		GFF3974	0.65	-1.8
4,008,570	-		GFF3974	0.66	-2.5
4,008,590	-		GFF3974	0.70	-0.9
4,008,604	+		GFF3974	0.73	+1.5
4,008,610	-		GFF3974	0.74	-2.0
4,008,612	-		GFF3974	0.75	-0.3
4,008,628	+		GFF3974	0.78	+1.0
4,008,628	+		GFF3974	0.78	+1.3
4,008,628	+		GFF3974	0.78	-0.7
4,008,628	+		GFF3974	0.78	-0.0
4,008,628	+		GFF3974	0.78	+0.8
4,008,628	+		GFF3974	0.78	-0.7
4,008,628	+		GFF3974	0.78	+0.6
4,008,628	+		GFF3974	0.78	-0.0
4,008,628	+		GFF3974	0.78	-0.3
4,008,636	-		GFF3974	0.80	-1.6
4,008,636	-		GFF3974	0.80	-1.5
4,008,636	-		GFF3974	0.80	-2.4
4,008,636	-		GFF3974	0.80	-0.0
4,008,636	-		GFF3974	0.80	-1.5
4,008,636	-		GFF3974	0.80	-0.7
4,008,641	-		GFF3974	0.81	+0.5
4,008,648	+		GFF3974	0.82	-0.4
4,008,648	+		GFF3974	0.82	-0.0
4,008,656	-		GFF3974	0.84	-0.6
4,008,656	-		GFF3974	0.84	-1.7
4,008,656	-		GFF3974	0.84	-0.5
4,008,656	-		GFF3974	0.84	-0.8
4,008,674	+		GFF3974	0.87	-0.7
4,008,713	-				+0.5
4,008,731	-				+0.3
4,008,733	+				+0.7
4,008,733	+				-1.3
4,008,753	-				-0.3
4,008,781	-				+0.7
4,008,789	+		GFF3975	0.11	-0.8
4,008,797	-		GFF3975	0.13	-1.3
4,008,799	+		GFF3975	0.13	-0.2
4,008,799	+		GFF3975	0.13	+0.2
4,008,799	+		GFF3975	0.13	-1.2
4,008,799	+		GFF3975	0.13	-0.3
4,008,799	+		GFF3975	0.13	-0.3
4,008,799	+		GFF3975	0.13	-0.6
4,008,799	+		GFF3975	0.13	+1.3
4,008,799	+		GFF3975	0.13	+0.2
4,008,799	+		GFF3975	0.13	+0.2
4,008,807	-		GFF3975	0.15	+0.0
4,008,807	-		GFF3975	0.15	+0.7
4,008,807	-		GFF3975	0.15	-0.5
4,008,807	-		GFF3975	0.15	-1.5
4,008,807	-		GFF3975	0.15	-0.3
4,008,807	-		GFF3975	0.15	-2.5
4,008,807	-		GFF3975	0.15	-0.0
4,008,807	-		GFF3975	0.15	-0.0
4,008,807	-		GFF3975	0.15	-1.9
4,008,807	-		GFF3975	0.15	-0.0
4,008,807	-		GFF3975	0.15	-1.8
4,008,807	-		GFF3975	0.15	+0.4
4,008,807	-		GFF3975	0.15	+0.2
4,008,807	-		GFF3975	0.15	+0.1
4,008,807	-		GFF3975	0.15	-0.6
4,008,807	-		GFF3975	0.15	+0.7
4,008,815	-		GFF3975	0.17	-0.4
4,008,831	+		GFF3975	0.20	-0.6
4,008,848	-		GFF3975	0.24	+1.3
4,008,878	+		GFF3975	0.31	-0.3
4,008,893	+		GFF3975	0.34	-0.1
4,008,893	+		GFF3975	0.34	+0.3
4,008,899	+		GFF3975	0.35	+1.5
4,008,899	-		GFF3975	0.35	+0.9
4,008,901	-		GFF3975	0.36	-0.8
4,008,901	-		GFF3975	0.36	+0.0
4,008,901	-		GFF3975	0.36	-1.2
4,008,901	-		GFF3975	0.36	+0.1
4,008,909	-		GFF3975	0.37	-0.4
4,008,909	-		GFF3975	0.37	-0.2
4,008,911	-		GFF3975	0.38	-0.2
4,008,919	-		GFF3975	0.39	-0.4
4,008,924	+		GFF3975	0.41	+0.0
4,008,934	+		GFF3975	0.43	+0.5
4,008,934	-		GFF3975	0.43	-0.5
4,008,942	-		GFF3975	0.44	-2.6
4,008,949	+		GFF3975	0.46	+0.1
4,008,950	-		GFF3975	0.46	-2.1
4,008,957	-		GFF3975	0.48	-1.9
4,009,010	+		GFF3975	0.59	+0.8
4,009,034	+		GFF3975	0.64	+1.6
4,009,042	-		GFF3975	0.66	+0.8
4,009,055	+		GFF3975	0.69	-1.1
4,009,055	+		GFF3975	0.69	+0.3
4,009,067	+		GFF3975	0.72	-1.5
4,009,075	-		GFF3975	0.73	+0.4
4,009,080	-		GFF3975	0.75	+0.0
4,009,107	+		GFF3975	0.80	+0.8
4,009,146	+		GFF3975	0.89	+0.1
4,009,161	-				-2.2
4,009,172	-				+0.0
4,009,173	-				+0.1
4,009,184	-				-0.6
4,009,211	-				-0.2
4,009,218	-				+1.4
4,009,218	-				-0.8
4,009,220	-				-0.8
4,009,222	+				-1.5
4,009,230	-				-0.5
4,009,230	-				-0.3
4,009,244	+				-1.5
4,009,245	+				-0.6
4,009,263	+				+0.1
4,009,263	+				-0.0
4,009,263	+				+0.2
4,009,267	+				-0.3
4,009,270	-				+0.3
4,009,275	-				-0.6
4,009,275	-				+0.4
4,009,275	-				+0.2
4,009,297	+				+1.4
4,009,305	-				+1.0
4,009,312	-				-0.1
4,009,312	-				-1.5
4,009,330	-				+0.3
4,009,334	+				+0.9
4,009,340	-		GFF3976	0.10	-2.0
4,009,362	-		GFF3976	0.13	+0.2
4,009,372	+		GFF3976	0.14	+0.3
4,009,373	-		GFF3976	0.14	-0.5
4,009,373	-		GFF3976	0.14	-0.5
4,009,385	+		GFF3976	0.16	-1.3
4,009,390	+		GFF3976	0.16	-0.8
4,009,390	+		GFF3976	0.16	-1.1
4,009,390	+		GFF3976	0.16	+0.3
4,009,395	+		GFF3976	0.17	-1.3
4,009,395	+		GFF3976	0.17	+0.7
4,009,395	+		GFF3976	0.17	+0.4
4,009,395	+		GFF3976	0.17	+0.1
4,009,403	-		GFF3976	0.18	-1.4
4,009,403	-		GFF3976	0.18	-0.1
4,009,403	-		GFF3976	0.18	+0.7
4,009,403	-		GFF3976	0.18	+0.9
4,009,405	+		GFF3976	0.18	-0.3
4,009,413	-		GFF3976	0.19	-0.4
4,009,413	-		GFF3976	0.19	+1.8
4,009,415	+		GFF3976	0.20	-1.3
4,009,421	+		GFF3976	0.20	+0.2
4,009,421	+		GFF3976	0.20	+0.3
4,009,433	-		GFF3976	0.22	+1.2
4,009,438	+		GFF3976	0.22	+0.4
4,009,458	+		GFF3976	0.25	-2.3
4,009,458	+		GFF3976	0.25	+0.9
4,009,466	+		GFF3976	0.26	-0.1
4,009,467	-		GFF3976	0.26	+0.0
4,009,468	+		GFF3976	0.26	+0.5
4,009,468	+		GFF3976	0.26	+0.2
4,009,468	+		GFF3976	0.26	+0.0
4,009,468	+		GFF3976	0.26	+1.0
4,009,468	+		GFF3976	0.26	+1.5
4,009,468	+		GFF3976	0.26	+0.9
4,009,468	+		GFF3976	0.26	+0.8
4,009,468	+		GFF3976	0.26	+0.5
4,009,468	+		GFF3976	0.26	+0.4
4,009,468	+		GFF3976	0.26	+0.7
4,009,468	+		GFF3976	0.26	+0.8
4,009,468	+		GFF3976	0.26	+0.2
4,009,468	+		GFF3976	0.26	+0.5
4,009,468	+		GFF3976	0.26	+0.4
4,009,468	+		GFF3976	0.26	-0.5
4,009,468	+		GFF3976	0.26	-0.3
4,009,468	+		GFF3976	0.26	+0.5
4,009,468	+		GFF3976	0.26	-1.4
4,009,468	+		GFF3976	0.26	+0.6
4,009,471	-		GFF3976	0.27	-0.7
4,009,471	-		GFF3976	0.27	+0.4
4,009,476	-		GFF3976	0.27	+0.4
4,009,476	-		GFF3976	0.27	-2.1
4,009,476	-		GFF3976	0.27	-1.3
4,009,476	-		GFF3976	0.27	-1.3
4,009,476	-		GFF3976	0.27	-0.3
4,009,476	-		GFF3976	0.27	+0.4
4,009,476	-		GFF3976	0.27	-0.9
4,009,476	-		GFF3976	0.27	-0.8
4,009,476	-		GFF3976	0.27	-1.1
4,009,476	-		GFF3976	0.27	-1.0
4,009,476	-		GFF3976	0.27	-1.4
4,009,478	+		GFF3976	0.28	+0.1
4,009,478	+		GFF3976	0.28	-1.4
4,009,478	+		GFF3976	0.28	+0.6
4,009,478	+		GFF3976	0.28	+0.5
4,009,481	-		GFF3976	0.28	-0.6
4,009,485	-		GFF3976	0.28	+1.0
4,009,486	-		GFF3976	0.29	+1.7
4,009,486	-		GFF3976	0.29	-1.4
4,009,486	-		GFF3976	0.29	+0.9
4,009,486	-		GFF3976	0.29	-1.6
4,009,498	+		GFF3976	0.30	+0.8
4,009,501	-		GFF3976	0.30	-0.5
4,009,507	+		GFF3976	0.31	+0.5
4,009,508	-		GFF3976	0.31	-0.0
4,009,517	+		GFF3976	0.32	-2.1
4,009,517	+		GFF3976	0.32	-1.5
4,009,517	+		GFF3976	0.32	+0.4
4,009,517	+		GFF3976	0.32	-2.3
4,009,517	+		GFF3976	0.32	+0.1
4,009,517	+		GFF3976	0.32	-0.4
4,009,517	+		GFF3976	0.32	-1.4
4,009,517	+		GFF3976	0.32	+0.1
4,009,517	+		GFF3976	0.32	-1.0
4,009,517	+		GFF3976	0.32	-2.1
4,009,517	+		GFF3976	0.32	+0.1
4,009,517	+		GFF3976	0.32	+0.3
4,009,517	+		GFF3976	0.32	+0.5
4,009,517	+		GFF3976	0.32	+0.2
4,009,517	+		GFF3976	0.32	-1.2
4,009,517	+		GFF3976	0.32	-2.2
4,009,517	+		GFF3976	0.32	-1.4
4,009,523	-		GFF3976	0.33	-1.9
4,009,525	-		GFF3976	0.33	-1.5
4,009,525	-		GFF3976	0.33	-1.3
4,009,525	-		GFF3976	0.33	-0.5
4,009,525	-		GFF3976	0.33	+0.2
4,009,525	-		GFF3976	0.33	+0.2
4,009,525	-		GFF3976	0.33	+0.2
4,009,525	-		GFF3976	0.33	-1.1
4,009,525	-		GFF3976	0.33	-0.4
4,009,525	-		GFF3976	0.33	-0.7
4,009,525	-		GFF3976	0.33	+0.1
4,009,525	-		GFF3976	0.33	+1.0
4,009,525	-		GFF3976	0.33	-0.9
4,009,526	+		GFF3976	0.34	+0.6
4,009,548	-		GFF3976	0.36	-1.9
4,009,550	+		GFF3976	0.37	+0.8
4,009,611	-		GFF3976	0.44	+0.1
4,009,633	+		GFF3976	0.47	-1.8
4,009,633	+		GFF3976	0.47	+1.1
4,009,641	-		GFF3976	0.48	-0.1
4,009,642	+		GFF3976	0.48	-2.5
4,009,642	+		GFF3976	0.48	-1.6
4,009,711	+		GFF3976	0.57	-0.3
4,009,711	+		GFF3976	0.57	-2.1
4,009,711	+		GFF3976	0.57	-0.6
4,009,711	+		GFF3976	0.57	-1.0
4,009,713	+		GFF3976	0.57	-0.6
4,009,716	+		GFF3976	0.58	-0.8
4,009,719	-		GFF3976	0.58	-0.4
4,009,719	-		GFF3976	0.58	-0.1
4,009,729	-		GFF3976	0.59	+0.3
4,009,733	-		GFF3976	0.60	+1.0
4,009,739	+		GFF3976	0.60	-0.8
4,009,744	+		GFF3976	0.61	+1.0
4,009,757	-		GFF3976	0.63	-1.3
4,009,770	+		GFF3976	0.64	-2.1
4,009,770	+		GFF3976	0.64	-0.0
4,009,770	+		GFF3976	0.64	-1.3
4,009,778	-		GFF3976	0.65	-0.7
4,009,778	-		GFF3976	0.65	-1.7
4,009,778	-		GFF3976	0.65	-0.3
4,009,785	+		GFF3976	0.66	-0.2
4,009,785	-		GFF3976	0.66	+0.2
4,009,792	+		GFF3976	0.67	+1.1
4,009,797	+		GFF3976	0.68	-0.3
4,009,807	+		GFF3976	0.69	-2.3
4,009,810	-		GFF3976	0.69	+0.3
4,009,812	-		GFF3976	0.70	+1.1
4,009,812	-		GFF3976	0.70	+0.4
4,009,822	-		GFF3976	0.71	+1.9
4,009,831	+		GFF3976	0.72	+0.2
4,009,831	+		GFF3976	0.72	-0.1
4,009,839	-		GFF3976	0.73	-1.6
4,009,848	+		GFF3976	0.74	-1.0
4,009,851	-		GFF3976	0.75	-0.6
4,009,867	-		GFF3976	0.77	+0.6
4,009,869	+		GFF3976	0.77	-0.6
4,009,869	+		GFF3976	0.77	-0.2
4,009,876	+		GFF3976	0.78	-0.8
4,009,876	+		GFF3976	0.78	+0.1
4,009,877	-		GFF3976	0.78	+0.3
4,009,877	-		GFF3976	0.78	-3.0
4,009,879	-		GFF3976	0.78	-0.7
4,009,888	-		GFF3976	0.79	+0.1
4,009,913	+		GFF3976	0.82	-1.4
4,009,947	-		GFF3976	0.87	-0.4
4,009,949	+		GFF3976	0.87	+0.2
4,009,949	+		GFF3976	0.87	+0.7
4,009,956	-		GFF3976	0.88	-0.7
4,009,956	-		GFF3976	0.88	+0.8
4,009,956	-		GFF3976	0.88	+0.1
4,009,956	-		GFF3976	0.88	-0.8
4,009,958	+		GFF3976	0.88	-0.3
4,009,966	-		GFF3976	0.89	-1.2
4,009,966	-		GFF3976	0.89	-0.6
4,009,966	-		GFF3976	0.89	-2.3
4,009,971	-		GFF3976	0.90	-1.2
4,009,971	-		GFF3976	0.90	+1.4
4,010,005	+				-0.6
4,010,007	+				-1.1
4,010,015	-				-0.3
4,010,037	+				+0.4
4,010,037	+				-0.5
4,010,037	+				-0.7
4,010,037	+				-1.3
4,010,037	+				+0.7
4,010,037	+				+0.6
4,010,045	-				+1.4
4,010,045	-				+0.5
4,010,054	+				-0.7
4,010,060	-				+0.9
4,010,060	-				-0.1
4,010,060	-				-1.4
4,010,119	+		GFF3977	0.17	-1.1
4,010,119	+		GFF3977	0.17	-1.4
4,010,119	+		GFF3977	0.17	+0.5
4,010,121	+		GFF3977	0.18	-0.7
4,010,121	+		GFF3977	0.18	+0.2
4,010,121	+		GFF3977	0.18	-2.0
4,010,121	+		GFF3977	0.18	-1.9
4,010,127	-		GFF3977	0.19	-0.4
4,010,129	-		GFF3977	0.20	+2.0
4,010,129	-		GFF3977	0.20	-0.3
4,010,148	+		GFF3977	0.25	+0.2
4,010,151	-		GFF3977	0.26	-0.1
4,010,172	-		GFF3977	0.31	-0.1
4,010,180	+		GFF3977	0.33	+0.8
4,010,182	-		GFF3977	0.34	-0.6
4,010,182	-		GFF3977	0.34	-1.6
4,010,182	-		GFF3977	0.34	+0.2
4,010,182	-		GFF3977	0.34	-0.3