Strain Fitness in Sphingobium sp. HT1-2 around GFF3965

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,002,657	+		GFF3963	0.86	+0.2
4,002,695	+				-1.7
4,002,695	+				+0.8
4,002,695	+				+1.1
4,002,695	+				-1.6
4,002,695	+				-0.9
4,002,695	+				+0.1
4,002,695	+				-0.1
4,002,703	-				+0.4
4,002,703	-				-1.8
4,002,705	+				-1.0
4,002,715	+				+0.2
4,002,723	-				+0.4
4,002,742	-				+0.3
4,002,749	+				+0.2
4,002,749	+				-0.5
4,002,751	+				+0.3
4,002,757	-				-0.3
4,002,796	+		GFF3964	0.16	-0.0
4,002,796	+		GFF3964	0.16	-0.2
4,002,796	+		GFF3964	0.16	+0.0
4,002,796	+		GFF3964	0.16	-1.8
4,002,796	+		GFF3964	0.16	+0.9
4,002,796	+		GFF3964	0.16	+0.2
4,002,796	+		GFF3964	0.16	-0.4
4,002,796	+		GFF3964	0.16	-1.3
4,002,796	+		GFF3964	0.16	-0.7
4,002,796	+		GFF3964	0.16	+0.3
4,002,798	+		GFF3964	0.16	+0.8
4,002,798	+		GFF3964	0.16	-0.3
4,002,798	+		GFF3964	0.16	+0.0
4,002,804	-		GFF3964	0.17	+0.9
4,002,804	-		GFF3964	0.17	-0.2
4,002,804	-		GFF3964	0.17	+0.1
4,002,804	-		GFF3964	0.17	-2.2
4,002,804	-		GFF3964	0.17	-0.7
4,002,804	-		GFF3964	0.17	-0.2
4,002,804	-		GFF3964	0.17	-1.1
4,002,804	-		GFF3964	0.17	-0.8
4,002,804	-		GFF3964	0.17	+0.1
4,002,804	-		GFF3964	0.17	-0.4
4,002,804	-		GFF3964	0.17	-1.3
4,002,806	-		GFF3964	0.17	-0.8
4,002,806	-		GFF3964	0.17	+1.5
4,002,806	-		GFF3964	0.17	+0.9
4,002,806	-		GFF3964	0.17	-0.4
4,002,820	+		GFF3964	0.20	-0.7
4,002,827	+		GFF3964	0.21	-1.8
4,002,827	+		GFF3964	0.21	+1.3
4,002,828	-		GFF3964	0.21	-1.1
4,002,835	-		GFF3964	0.22	-0.3
4,002,835	-		GFF3964	0.22	+0.7
4,002,844	-		GFF3964	0.24	+0.1
4,002,845	-		GFF3964	0.24	-1.5
4,002,849	+		GFF3964	0.24	-0.1
4,002,873	-		GFF3964	0.28	+0.6
4,002,913	-		GFF3964	0.35	+0.1
4,002,913	-		GFF3964	0.35	+0.1
4,002,913	-		GFF3964	0.35	-1.0
4,002,940	+		GFF3964	0.39	+1.0
4,002,969	+		GFF3964	0.44	-0.6
4,002,977	-		GFF3964	0.45	+0.3
4,002,977	-		GFF3964	0.45	-1.1
4,002,979	+		GFF3964	0.46	-1.0
4,002,979	+		GFF3964	0.46	-0.5
4,002,979	+		GFF3964	0.46	+0.7
4,002,987	-		GFF3964	0.47	+0.3
4,002,993	-		GFF3964	0.48	+2.0
4,003,046	+		GFF3964	0.56	-0.2
4,003,055	-		GFF3964	0.58	+0.5
4,003,080	+		GFF3964	0.62	-0.1
4,003,088	-		GFF3964	0.63	+0.3
4,003,088	-		GFF3964	0.63	-1.2
4,003,088	-		GFF3964	0.63	+0.1
4,003,112	-		GFF3964	0.67	-0.2
4,003,143	+		GFF3964	0.72	+0.6
4,003,153	+		GFF3964	0.74	+0.5
4,003,158	+		GFF3964	0.75	+0.5
4,003,158	+		GFF3964	0.75	-0.4
4,003,166	-		GFF3964	0.76	+0.5
4,003,166	-		GFF3964	0.76	-0.4
4,003,166	-		GFF3964	0.76	-0.2
4,003,193	-		GFF3964	0.80	+0.8
4,003,261	+				+0.5
4,003,262	+				+0.1
4,003,281	+				-0.4
4,003,300	+				-0.7
4,003,307	+				+0.2
4,003,307	+				+1.0
4,003,307	+				-0.8
4,003,307	+				+1.3
4,003,307	+				+0.9
4,003,314	+				-2.4
4,003,315	-				+0.4
4,003,315	-				+1.3
4,003,323	+				-1.1
4,003,328	+				-1.7
4,003,331	-				+0.9
4,003,331	-				-0.3
4,003,331	-				-0.9
4,003,331	-				-1.3
4,003,336	-				-0.6
4,003,336	-				-0.9
4,003,336	-				-0.6
4,003,365	+				-1.5
4,003,388	-				+0.6
4,003,409	+				+0.5
4,003,409	+				-1.0
4,003,409	+				+0.3
4,003,409	+				-0.9
4,003,409	-				-0.8
4,003,414	+				-0.2
4,003,414	+				-2.6
4,003,414	+				+0.3
4,003,414	+				+0.6
4,003,417	-				+0.3
4,003,417	-				-1.0
4,003,417	-				-2.2
4,003,417	-				-1.6
4,003,417	-				+0.3
4,003,422	-				-0.8
4,003,427	+				-2.1
4,003,428	-				-0.6
4,003,437	+				-1.3
4,003,439	+				-0.1
4,003,447	-				-2.3
4,003,449	-				-1.0
4,003,469	+				-1.7
4,003,477	-				-0.5
4,003,489	+				-0.7
4,003,502	-				-1.1
4,003,506	+				-0.4
4,003,514	-				-0.7
4,003,520	-				+0.3
4,003,520	-				-0.9
4,003,532	-				-1.1
4,003,534	+				-0.5
4,003,552	-				+0.9
4,003,557	+				-0.5
4,003,563	-				-1.3
4,003,590	-				-0.8
4,003,590	-				+1.3
4,003,590	-				+0.6
4,003,635	+				-0.2
4,003,635	+				+0.3
4,003,635	+				-0.2
4,003,635	+				+0.5
4,003,643	-				+1.2
4,003,644	-				-0.8
4,003,683	+				-0.4
4,003,690	-		GFF3965	0.11	+0.7
4,003,696	+		GFF3965	0.12	+0.3
4,003,698	-		GFF3965	0.13	+0.8
4,003,698	-		GFF3965	0.13	-0.3
4,003,703	+		GFF3965	0.14	+0.6
4,003,703	+		GFF3965	0.14	+0.0
4,003,706	+		GFF3965	0.14	+0.2
4,003,706	+		GFF3965	0.14	-0.4
4,003,711	+		GFF3965	0.16	+0.3
4,003,716	+		GFF3965	0.17	-1.6
4,003,716	+		GFF3965	0.17	+1.1
4,003,716	+		GFF3965	0.17	+1.3
4,003,716	+		GFF3965	0.17	-0.2
4,003,716	+		GFF3965	0.17	-1.2
4,003,716	+		GFF3965	0.17	+0.9
4,003,716	+		GFF3965	0.17	-0.7
4,003,724	-		GFF3965	0.18	-0.9
4,003,724	-		GFF3965	0.18	+0.5
4,003,724	-		GFF3965	0.18	+0.2
4,003,724	-		GFF3965	0.18	-1.8
4,003,724	-		GFF3965	0.18	-0.6
4,003,724	-		GFF3965	0.18	+1.0
4,003,724	-		GFF3965	0.18	-0.6
4,003,724	-		GFF3965	0.18	+1.9
4,003,724	-		GFF3965	0.18	-0.9
4,003,724	-		GFF3965	0.18	-0.1
4,003,776	-		GFF3965	0.30	-0.5
4,003,804	-		GFF3965	0.36	-0.1
4,003,828	+		GFF3965	0.41	-0.1
4,003,838	+		GFF3965	0.43	-0.7
4,003,885	+		GFF3965	0.54	+0.7
4,003,891	+		GFF3965	0.55	+0.9
4,003,893	-		GFF3965	0.55	+0.1
4,003,906	+		GFF3965	0.58	+0.4
4,003,906	+		GFF3965	0.58	+0.5
4,003,909	-		GFF3965	0.59	+0.1
4,003,914	-		GFF3965	0.60	-0.2
4,003,914	-		GFF3965	0.60	+0.1
4,003,914	-		GFF3965	0.60	+0.4
4,003,919	-		GFF3965	0.61	-0.0
4,003,956	-		GFF3965	0.69	-0.4
4,003,975	-		GFF3965	0.73	-0.7
4,003,986	-		GFF3965	0.76	+0.9
4,003,993	+		GFF3965	0.77	+0.6
4,003,993	+		GFF3965	0.77	+0.5
4,004,001	-		GFF3965	0.79	-0.4
4,004,014	+		GFF3965	0.82	+0.7
4,004,014	+		GFF3965	0.82	+0.6
4,004,027	+		GFF3965	0.85	-2.1
4,004,038	+		GFF3965	0.87	-0.2
4,004,038	+		GFF3965	0.87	+1.6
4,004,038	+		GFF3965	0.87	+0.6
4,004,038	+		GFF3965	0.87	-0.3
4,004,038	+		GFF3965	0.87	-0.6
4,004,038	+		GFF3965	0.87	+0.5
4,004,038	+		GFF3965	0.87	+1.7
4,004,038	+		GFF3965	0.87	-0.2
4,004,038	+		GFF3965	0.87	+0.6
4,004,038	+		GFF3965	0.87	-1.9
4,004,038	+		GFF3965	0.87	-1.7
4,004,038	+		GFF3965	0.87	-1.7
4,004,046	-		GFF3965	0.89	-0.4
4,004,046	-		GFF3965	0.89	-0.1
4,004,046	-		GFF3965	0.89	+0.7
4,004,046	-		GFF3965	0.89	+0.1
4,004,046	-		GFF3965	0.89	-0.5
4,004,046	-		GFF3965	0.89	-0.1
4,004,046	-		GFF3965	0.89	-1.2
4,004,053	-				+1.1
4,004,084	+				-0.7
4,004,090	+				-0.3
4,004,125	-				-0.8
4,004,128	+				+0.3
4,004,130	+				-2.2
4,004,135	+				-0.6
4,004,138	-		GFF3966	0.11	+0.4
4,004,140	+		GFF3966	0.11	-1.8
4,004,157	-		GFF3966	0.15	+0.6
4,004,159	-		GFF3966	0.15	-0.4
4,004,159	-		GFF3966	0.15	+0.7
4,004,162	+		GFF3966	0.16	-1.0
4,004,162	+		GFF3966	0.16	+0.8
4,004,162	+		GFF3966	0.16	-1.6
4,004,162	+		GFF3966	0.16	-0.8
4,004,164	-		GFF3966	0.17	-0.4
4,004,171	+		GFF3966	0.18	-0.1
4,004,171	+		GFF3966	0.18	-0.7
4,004,173	+		GFF3966	0.19	-0.5
4,004,173	+		GFF3966	0.19	-0.9
4,004,179	-		GFF3966	0.20	+1.8
4,004,179	-		GFF3966	0.20	+0.4
4,004,179	-		GFF3966	0.20	+0.8
4,004,179	-		GFF3966	0.20	-0.9
4,004,194	+		GFF3966	0.23	+0.2
4,004,217	+		GFF3966	0.29	+0.6
4,004,222	+		GFF3966	0.30	+0.4
4,004,222	+		GFF3966	0.30	-2.1
4,004,222	+		GFF3966	0.30	-0.5
4,004,222	+		GFF3966	0.30	-0.3
4,004,222	+		GFF3966	0.30	-0.2
4,004,228	+		GFF3966	0.31	+0.1
4,004,230	-		GFF3966	0.32	-1.2
4,004,230	-		GFF3966	0.32	-0.6
4,004,230	-		GFF3966	0.32	-0.9
4,004,236	-		GFF3966	0.33	+0.6
4,004,238	+		GFF3966	0.34	-1.4
4,004,238	+		GFF3966	0.34	-0.8
4,004,243	+		GFF3966	0.35	+1.2
4,004,243	+		GFF3966	0.35	+0.9
4,004,243	+		GFF3966	0.35	+0.3
4,004,243	+		GFF3966	0.35	-0.0
4,004,251	-		GFF3966	0.37	-0.9
4,004,251	-		GFF3966	0.37	+0.3
4,004,251	-		GFF3966	0.37	+1.0
4,004,259	+		GFF3966	0.38	-1.8
4,004,288	+		GFF3966	0.45	+0.6
4,004,296	+		GFF3966	0.47	-1.6
4,004,298	-		GFF3966	0.47	-1.1
4,004,298	-		GFF3966	0.47	+0.9
4,004,373	-		GFF3966	0.65	+0.2
4,004,380	+		GFF3966	0.66	-0.2
4,004,398	+		GFF3966	0.70	-0.5
4,004,444	+		GFF3966	0.81	+1.1
4,004,444	+		GFF3966	0.81	+1.5
4,004,452	-		GFF3966	0.83	-0.6
4,004,452	-		GFF3966	0.83	+1.0
4,004,483	-				+0.6
4,004,483	-				-1.0
4,004,485	+				-1.6
4,004,494	-				-0.9
4,004,500	-				-0.1
4,004,500	-				+0.2
4,004,500	-				-1.1
4,004,500	-				+0.4
4,004,505	+				+0.8
4,004,505	+				+0.1
4,004,505	+				-1.4
4,004,505	+				+1.5
4,004,505	+				+0.5
4,004,505	+				+0.4
4,004,505	+				+0.3
4,004,505	+				+0.1
4,004,505	+				-0.1
4,004,505	+				-0.3
4,004,505	+				-0.2
4,004,505	-				+1.2
4,004,511	+				-1.0
4,004,513	-				+0.0
4,004,513	-				-0.3
4,004,513	-				-0.4
4,004,513	-				-0.9
4,004,516	+				+0.0
4,004,524	-				+0.2
4,004,539	+				-0.1
4,004,611	+				-1.1
4,004,700	-				-0.9
4,004,739	-				-0.1
4,004,748	+				-1.0
4,004,812	-				+0.3
4,004,813	-				+0.7
4,004,823	-				-0.8
4,004,832	+				-0.2
4,004,832	+				-0.9
4,004,849	+				-2.9
4,004,849	+				+0.4
4,004,857	-				+1.6
4,004,873	+		GFF3967	0.13	-0.1
4,004,874	+		GFF3967	0.13	-1.6
4,004,884	+		GFF3967	0.15	+1.2
4,004,892	+		GFF3967	0.17	+0.0
4,004,892	-		GFF3967	0.17	-0.0
4,004,899	+		GFF3967	0.18	-0.7
4,004,899	+		GFF3967	0.18	-0.7
4,004,900	-		GFF3967	0.19	-0.9
4,004,900	-		GFF3967	0.19	-0.9
4,004,900	-		GFF3967	0.19	-2.7
4,004,900	-		GFF3967	0.19	+0.1
4,004,900	-		GFF3967	0.19	+0.9
4,004,902	+		GFF3967	0.19	+0.1
4,004,907	+		GFF3967	0.20	-1.4
4,004,912	+		GFF3967	0.21	-2.4
4,004,912	+		GFF3967	0.21	-0.0
4,004,925	-		GFF3967	0.24	+0.4
4,004,944	+		GFF3967	0.28	-0.6
4,004,944	+		GFF3967	0.28	+0.0
4,004,952	-		GFF3967	0.30	+0.2
4,004,952	-		GFF3967	0.30	+0.4
4,004,952	-		GFF3967	0.30	-1.3
4,004,952	-		GFF3967	0.30	-1.1
4,004,960	-		GFF3967	0.32	-0.6
4,004,962	+		GFF3967	0.32	+0.5
4,004,962	+		GFF3967	0.32	-0.7
4,004,962	+		GFF3967	0.32	-1.0
4,004,962	+		GFF3967	0.32	+1.2
4,004,962	+		GFF3967	0.32	-0.6
4,004,962	+		GFF3967	0.32	+0.1
4,004,962	+		GFF3967	0.32	-0.1
4,004,962	+		GFF3967	0.32	-0.6
4,004,967	+		GFF3967	0.33	-0.2
4,004,967	+		GFF3967	0.33	-1.4
4,004,967	+		GFF3967	0.33	+0.1
4,004,967	+		GFF3967	0.33	-2.5
4,004,967	+		GFF3967	0.33	+0.3
4,004,967	+		GFF3967	0.33	-1.0
4,004,967	+		GFF3967	0.33	-1.4
4,004,967	+		GFF3967	0.33	+0.9
4,004,967	+		GFF3967	0.33	-0.5
4,004,967	+		GFF3967	0.33	+0.7
4,004,967	+		GFF3967	0.33	+1.0
4,004,967	+		GFF3967	0.33	+0.3
4,004,967	+		GFF3967	0.33	-0.1
4,004,967	+		GFF3967	0.33	-2.0
4,004,967	+		GFF3967	0.33	-1.1
4,004,967	+		GFF3967	0.33	-0.5
4,004,967	+		GFF3967	0.33	-0.4
4,004,967	+		GFF3967	0.33	-0.9
4,004,967	+		GFF3967	0.33	+1.1
4,004,967	+		GFF3967	0.33	-0.1
4,004,967	+		GFF3967	0.33	+0.0
4,004,967	+		GFF3967	0.33	+0.6
4,004,967	+		GFF3967	0.33	+0.7
4,004,967	+		GFF3967	0.33	-0.9
4,004,967	+		GFF3967	0.33	-1.8
4,004,967	+		GFF3967	0.33	-1.5
4,004,967	+		GFF3967	0.33	-0.7
4,004,967	+		GFF3967	0.33	-1.6
4,004,967	+		GFF3967	0.33	-1.1
4,004,967	+		GFF3967	0.33	-0.1
4,004,967	+		GFF3967	0.33	-1.6
4,004,967	+		GFF3967	0.33	-0.3
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