Strain Fitness in Sphingobium sp. HT1-2 around GFF3954

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,994,297	-		GFF3952	0.78	+0.6
3,994,322	+		GFF3952	0.80	+0.2
3,994,330	-		GFF3952	0.80	-0.1
3,994,332	-		GFF3952	0.80	-1.3
3,994,336	+		GFF3952	0.81	-0.1
3,994,344	-		GFF3952	0.81	+1.1
3,994,405	+		GFF3952	0.86	-1.1
3,994,406	-		GFF3952	0.86	+1.3
3,994,438	+		GFF3952	0.88	-0.6
3,994,438	+		GFF3952	0.88	-0.7
3,994,438	+		GFF3952	0.88	-1.0
3,994,438	+		GFF3952	0.88	+0.0
3,994,438	+		GFF3952	0.88	+0.9
3,994,439	+		GFF3952	0.88	-0.8
3,994,446	-		GFF3952	0.89	+0.3
3,994,446	-		GFF3952	0.89	+0.5
3,994,446	-		GFF3952	0.89	-1.8
3,994,447	-		GFF3952	0.89	+0.5
3,994,447	-		GFF3952	0.89	-0.3
3,994,455	+		GFF3952	0.89	-0.6
3,994,471	+				+1.4
3,994,479	-				-0.1
3,994,481	+				-0.3
3,994,504	-				+0.4
3,994,515	+				-0.5
3,994,515	+				+0.4
3,994,523	-				+0.5
3,994,525	+				-0.7
3,994,525	+				+0.4
3,994,525	+				+0.7
3,994,525	+				+1.1
3,994,528	-				+0.6
3,994,533	-				+0.9
3,994,533	-				-1.1
3,994,533	-				-0.2
3,994,537	+				-1.1
3,994,540	-				-2.0
3,994,545	-				-0.3
3,994,557	+				+0.0
3,994,578	+				-0.2
3,994,578	+				-0.3
3,994,584	+				-1.1
3,994,586	-				-0.3
3,994,586	-				-0.9
3,994,586	-				+0.1
3,994,590	+				+1.1
3,994,701	+				-0.3
3,994,701	+				-1.3
3,994,703	-				-0.2
3,994,706	+				+0.6
3,994,706	+				+0.9
3,994,706	+				+0.2
3,994,706	+				+1.6
3,994,706	+				-0.8
3,994,706	+				-0.1
3,994,707	+				-0.8
3,994,714	-				+1.6
3,994,714	-				-0.0
3,994,714	-				-0.7
3,994,714	-				+0.9
3,994,714	-				-0.9
3,994,716	+				-0.5
3,994,716	+				-0.5
3,994,724	-				-0.2
3,994,726	+				-1.8
3,994,743	+				-0.6
3,994,750	-				-0.3
3,994,753	+				-1.6
3,994,761	-		GFF3953	0.11	+0.2
3,994,769	+		GFF3953	0.12	+0.3
3,994,777	-		GFF3953	0.14	+0.2
3,994,799	+		GFF3953	0.18	-0.6
3,994,827	+		GFF3953	0.23	+0.7
3,994,835	+		GFF3953	0.25	+0.1
3,994,843	-		GFF3953	0.26	+0.8
3,994,845	+		GFF3953	0.27	-2.2
3,994,845	+		GFF3953	0.27	-0.8
3,994,845	+		GFF3953	0.27	+0.3
3,994,845	+		GFF3953	0.27	-0.1
3,994,850	+		GFF3953	0.28	+0.5
3,994,850	+		GFF3953	0.28	-1.3
3,994,853	-		GFF3953	0.28	+0.5
3,994,853	-		GFF3953	0.28	+0.6
3,994,951	+		GFF3953	0.46	+1.3
3,994,951	+		GFF3953	0.46	-1.1
3,994,951	+		GFF3953	0.46	-0.6
3,994,951	+		GFF3953	0.46	-0.0
3,994,951	+		GFF3953	0.46	+0.2
3,994,956	+		GFF3953	0.47	+1.1
3,994,956	+		GFF3953	0.47	+1.6
3,994,959	-		GFF3953	0.48	-0.3
3,994,959	-		GFF3953	0.48	-0.4
3,994,959	-		GFF3953	0.48	-0.2
3,994,959	-		GFF3953	0.48	+0.7
3,994,959	-		GFF3953	0.48	+0.4
3,994,959	-		GFF3953	0.48	-0.4
3,994,959	-		GFF3953	0.48	-1.4
3,994,959	-		GFF3953	0.48	-0.5
3,994,972	-		GFF3953	0.50	+0.2
3,994,974	-		GFF3953	0.51	+0.6
3,994,995	+		GFF3953	0.55	-0.5
3,994,995	+		GFF3953	0.55	+0.5
3,995,001	-		GFF3953	0.56	-0.6
3,995,001	-		GFF3953	0.56	+0.9
3,995,006	-		GFF3953	0.57	-1.7
3,995,030	+		GFF3953	0.61	+1.1
3,995,030	+		GFF3953	0.61	-1.2
3,995,030	+		GFF3953	0.61	+0.4
3,995,030	+		GFF3953	0.61	+1.9
3,995,030	+		GFF3953	0.61	-1.4
3,995,038	-		GFF3953	0.63	+0.5
3,995,038	-		GFF3953	0.63	-0.4
3,995,061	+		GFF3953	0.67	-0.1
3,995,072	+		GFF3953	0.69	-1.6
3,995,080	-		GFF3953	0.71	-1.6
3,995,091	+		GFF3953	0.73	-0.5
3,995,091	+		GFF3953	0.73	-0.0
3,995,091	+		GFF3953	0.73	-1.3
3,995,099	-		GFF3953	0.74	-0.3
3,995,099	-		GFF3953	0.74	+0.4
3,995,099	-		GFF3953	0.74	+0.5
3,995,099	-		GFF3953	0.74	-1.7
3,995,099	-		GFF3953	0.74	-0.1
3,995,099	-		GFF3953	0.74	-1.3
3,995,110	-		GFF3953	0.76	+0.3
3,995,166	+		GFF3953	0.87	-0.6
3,995,171	+		GFF3953	0.88	+0.3
3,995,171	+		GFF3953	0.88	-0.3
3,995,174	-		GFF3953	0.88	+0.3
3,995,174	-		GFF3953	0.88	-1.2
3,995,191	+				+0.9
3,995,210	+				-1.9
3,995,218	-				+0.6
3,995,226	+				-1.5
3,995,239	-				+0.8
3,995,245	+				-1.3
3,995,263	+				-0.7
3,995,263	+				-1.5
3,995,263	+				-0.6
3,995,263	+				-0.9
3,995,268	+				-1.0
3,995,268	+				-0.9
3,995,268	+				-0.1
3,995,268	+				+1.0
3,995,268	+				+0.5
3,995,268	+				-1.8
3,995,268	+				+1.1
3,995,268	+				-1.3
3,995,268	+				-1.1
3,995,268	+				-0.4
3,995,268	+				+1.5
3,995,268	+				-0.2
3,995,268	+				-0.7
3,995,268	+				+0.1
3,995,268	+				-0.9
3,995,268	+				+0.9
3,995,271	-				-0.7
3,995,271	-				-0.7
3,995,271	-				+0.1
3,995,273	+				-1.4
3,995,276	-				-1.2
3,995,276	-				-0.6
3,995,276	-				+1.1
3,995,276	-				-3.0
3,995,276	-				-0.0
3,995,276	-				-0.2
3,995,276	-				-2.8
3,995,276	-				-0.4
3,995,278	+				-0.4
3,995,278	+				+1.0
3,995,281	-				-1.2
3,995,286	-				-0.6
3,995,302	+				-1.0
3,995,305	-				+0.1
3,995,308	+				-1.3
3,995,315	+				-0.5
3,995,321	-				-1.1
3,995,328	+				-1.1
3,995,333	+				-0.8
3,995,335	-				+0.8
3,995,335	-				+0.1
3,995,336	-				+1.6
3,995,340	-				-0.1
3,995,341	-				+0.8
3,995,370	+				-0.3
3,995,409	-		GFF3954	0.12	-0.3
3,995,440	-		GFF3954	0.15	-0.1
3,995,442	+		GFF3954	0.16	-0.5
3,995,448	+		GFF3954	0.16	-0.1
3,995,449	-		GFF3954	0.16	-0.1
3,995,513	+		GFF3954	0.23	+0.5
3,995,555	-		GFF3954	0.27	+0.1
3,995,561	+		GFF3954	0.28	+0.4
3,995,568	-		GFF3954	0.28	+0.9
3,995,576	+		GFF3954	0.29	-0.0
3,995,586	+		GFF3954	0.30	+1.5
3,995,591	+		GFF3954	0.31	+0.0
3,995,595	-		GFF3954	0.31	+0.3
3,995,599	-		GFF3954	0.31	+1.2
3,995,599	-		GFF3954	0.31	-1.4
3,995,604	-		GFF3954	0.32	+0.3
3,995,629	+		GFF3954	0.34	+0.2
3,995,631	+		GFF3954	0.35	-0.7
3,995,675	+		GFF3954	0.39	+1.1
3,995,680	+		GFF3954	0.40	-0.0
3,995,683	-		GFF3954	0.40	-1.4
3,995,689	+		GFF3954	0.40	-0.9
3,995,709	+		GFF3954	0.42	-1.1
3,995,714	-		GFF3954	0.43	+0.5
3,995,719	-		GFF3954	0.43	-0.2
3,995,733	-		GFF3954	0.45	-0.5
3,995,733	-		GFF3954	0.45	-0.2
3,995,743	-		GFF3954	0.46	+0.7
3,995,768	+		GFF3954	0.48	-1.3
3,995,776	-		GFF3954	0.49	-2.6
3,995,778	+		GFF3954	0.49	-0.6
3,995,778	+		GFF3954	0.49	-1.5
3,995,786	-		GFF3954	0.50	-1.3
3,995,786	-		GFF3954	0.50	-1.6
3,995,823	+		GFF3954	0.54	-1.0
3,995,854	-		GFF3954	0.57	+0.3
3,995,859	-		GFF3954	0.58	+0.6
3,995,861	+		GFF3954	0.58	-2.5
3,995,869	-		GFF3954	0.59	+0.5
3,995,869	-		GFF3954	0.59	+0.1
3,995,869	-		GFF3954	0.59	+0.4
3,995,869	-		GFF3954	0.59	-0.9
3,995,869	-		GFF3954	0.59	-2.5
3,995,873	+		GFF3954	0.59	+0.1
3,995,873	+		GFF3954	0.59	+1.2
3,995,873	+		GFF3954	0.59	+0.3
3,995,873	+		GFF3954	0.59	-2.9
3,995,881	-		GFF3954	0.60	+0.5
3,995,898	+		GFF3954	0.61	-0.7
3,995,926	+		GFF3954	0.64	-1.5
3,995,926	-		GFF3954	0.64	-0.5
3,995,931	+		GFF3954	0.65	+0.6
3,995,939	-		GFF3954	0.66	-0.6
3,995,948	+		GFF3954	0.66	+0.0
3,995,959	+		GFF3954	0.68	-1.0
3,995,962	-		GFF3954	0.68	-0.0
3,995,969	+		GFF3954	0.69	-0.4
3,995,969	+		GFF3954	0.69	-1.0
3,995,972	-		GFF3954	0.69	+0.2
3,996,001	+		GFF3954	0.72	+0.7
3,996,001	+		GFF3954	0.72	-1.7
3,996,004	-		GFF3954	0.72	-2.5
3,996,009	-		GFF3954	0.73	+0.2
3,996,009	-		GFF3954	0.73	-2.6
3,996,009	-		GFF3954	0.73	+1.4
3,996,009	-		GFF3954	0.73	+1.5
3,996,014	+		GFF3954	0.73	+0.3
3,996,014	+		GFF3954	0.73	-1.3
3,996,040	-		GFF3954	0.76	-0.3
3,996,040	-		GFF3954	0.76	-0.2
3,996,040	-		GFF3954	0.76	-0.5
3,996,060	+		GFF3954	0.78	-0.0
3,996,079	+		GFF3954	0.80	+0.2
3,996,085	+		GFF3954	0.80	-1.7
3,996,093	-		GFF3954	0.81	-1.4
3,996,093	-		GFF3954	0.81	-0.2
3,996,093	-		GFF3954	0.81	-0.5
3,996,093	-		GFF3954	0.81	-0.2
3,996,093	-		GFF3954	0.81	+0.0
3,996,093	-		GFF3954	0.81	-0.6
3,996,095	+		GFF3954	0.81	-2.8
3,996,098	+		GFF3954	0.82	+0.3
3,996,103	+		GFF3954	0.82	+0.9
3,996,108	+		GFF3954	0.83	-1.2
3,996,108	+		GFF3954	0.83	+0.5
3,996,108	+		GFF3954	0.83	-0.1
3,996,110	+		GFF3954	0.83	-1.4
3,996,110	+		GFF3954	0.83	-0.7
3,996,110	-		GFF3954	0.83	+0.8
3,996,115	+		GFF3954	0.83	+0.1
3,996,116	-		GFF3954	0.83	+0.6
3,996,118	-		GFF3954	0.84	+0.6
3,996,118	-		GFF3954	0.84	+0.5
3,996,134	-		GFF3954	0.85	+0.2
3,996,175	+		GFF3954	0.89	+0.5
3,996,183	-				-0.3
3,996,183	-				-0.5
3,996,183	-				-0.3
3,996,201	-				-0.3
3,996,202	-				-1.6
3,996,236	-				+0.1
3,996,251	+				-1.4
3,996,258	-				-0.9
3,996,268	-				-0.8
3,996,268	-				-0.7
3,996,284	+				-0.3
3,996,316	+		GFF3955	0.13	-0.5
3,996,320	-		GFF3955	0.15	-0.7
3,996,328	+		GFF3955	0.18	+1.3
3,996,328	+		GFF3955	0.18	-0.7
3,996,328	+		GFF3955	0.18	-0.1
3,996,336	-		GFF3955	0.20	-2.1
3,996,336	-		GFF3955	0.20	+0.3
3,996,336	-		GFF3955	0.20	-1.1
3,996,336	-		GFF3955	0.20	+0.5
3,996,349	-		GFF3955	0.25	-2.1
3,996,360	+		GFF3955	0.29	-3.0
3,996,367	-		GFF3955	0.31	-0.1
3,996,370	+		GFF3955	0.32	+0.3
3,996,394	+		GFF3955	0.41	-1.8
3,996,397	+		GFF3955	0.42	+1.4
3,996,397	+		GFF3955	0.42	-0.2
3,996,397	+		GFF3955	0.42	-1.6
3,996,397	+		GFF3955	0.42	-0.6
3,996,397	+		GFF3955	0.42	-0.3
3,996,397	+		GFF3955	0.42	-0.9
3,996,397	+		GFF3955	0.42	+0.3
3,996,399	+		GFF3955	0.42	+1.3
3,996,405	-		GFF3955	0.45	-1.5
3,996,405	-		GFF3955	0.45	-0.6
3,996,405	-		GFF3955	0.45	-0.3
3,996,405	-		GFF3955	0.45	+0.4
3,996,405	-		GFF3955	0.45	+0.1
3,996,405	-		GFF3955	0.45	+1.1
3,996,410	+		GFF3955	0.46	+0.2
3,996,413	-		GFF3955	0.47	+0.1
3,996,422	+		GFF3955	0.51	-0.1
3,996,435	+		GFF3955	0.55	+0.5
3,996,445	+		GFF3955	0.59	-1.0
3,996,445	+		GFF3955	0.59	-0.9
3,996,445	+		GFF3955	0.59	+0.2
3,996,445	+		GFF3955	0.59	-0.3
3,996,445	+		GFF3955	0.59	+1.7
3,996,445	+		GFF3955	0.59	-0.9
3,996,445	+		GFF3955	0.59	-0.5
3,996,445	+		GFF3955	0.59	-0.7
3,996,445	+		GFF3955	0.59	+0.4
3,996,445	+		GFF3955	0.59	-0.6
3,996,445	+		GFF3955	0.59	-0.5
3,996,445	+		GFF3955	0.59	+0.8
3,996,445	+		GFF3955	0.59	+0.8
3,996,445	+		GFF3955	0.59	+0.2
3,996,445	+		GFF3955	0.59	+0.5
3,996,445	+		GFF3955	0.59	+0.6
3,996,445	+		GFF3955	0.59	+0.3
3,996,453	-		GFF3955	0.61	+0.4
3,996,453	-		GFF3955	0.61	-0.6
3,996,453	-		GFF3955	0.61	+0.9
3,996,453	-		GFF3955	0.61	+0.0
3,996,453	-		GFF3955	0.61	+0.1
3,996,453	-		GFF3955	0.61	+0.5
3,996,453	-		GFF3955	0.61	-0.5
3,996,453	-		GFF3955	0.61	+1.0
3,996,453	-		GFF3955	0.61	-0.6
3,996,453	-		GFF3955	0.61	+2.3
3,996,453	-		GFF3955	0.61	-1.3
3,996,458	-		GFF3955	0.63	-0.7
3,996,460	-		GFF3955	0.64	-1.1
3,996,526	-		GFF3955	0.87	-1.2
3,996,544	-				-2.5
3,996,584	+				+1.2
3,996,606	+				+1.2
3,996,613	+				-0.3
3,996,615	+				-0.2
3,996,615	+				+0.7
3,996,615	-				-0.2
3,996,623	-				-0.1
3,996,707	-				-0.5
3,996,735	-				-2.1
3,996,751	-				-1.4
3,996,757	-				-1.2
3,996,873	-				-0.2
3,996,878	-				+1.0
3,996,922	+				-2.1
3,996,923	-				-0.7
3,996,930	-				+0.6
3,996,953	-				+0.3
3,996,969	+				-1.3
3,996,969	+				+0.5
3,996,974	+				+0.5
3,996,974	+				-3.3
3,996,977	-				+0.9
3,996,981	+				-1.2
3,996,982	+				+1.4
3,996,982	+				-0.6
3,996,982	+				+1.1
3,996,990	-				+0.4
3,997,022	-				-0.8
3,997,035	+				+0.1
3,997,035	+				-0.9
3,997,042	-				-0.6
3,997,043	-				-1.8
3,997,043	-				-0.9
3,997,043	-				+0.3
3,997,075	+				-1.0
3,997,088	+				-0.1
3,997,125	-				+1.5
3,997,127	-				-2.0
3,997,134	+				+1.3
3,997,136	+		GFF3956	0.10	-0.3
3,997,144	-		GFF3956	0.10	+0.5
3,997,168	+		GFF3956	0.12	+0.5
3,997,168	+		GFF3956	0.12	-0.1
3,997,168	+		GFF3956	0.12	-3.1
3,997,173	-		GFF3956	0.12	-0.4
3,997,175	+		GFF3956	0.12	-1.9
3,997,175	+		GFF3956	0.12	+1.0
3,997,175	+		GFF3956	0.12	-0.3
3,997,176	-		GFF3956	0.12	+0.0
3,997,198	-		GFF3956	0.13	+0.4
3,997,204	+		GFF3956	0.13	+0.5
3,997,212	-		GFF3956	0.14	+0.7
3,997,212	-		GFF3956	0.14	-0.5
3,997,212	-		GFF3956	0.14	+0.5
3,997,220	+		GFF3956	0.14	+1.3
3,997,222	+		GFF3956	0.14	+0.3
3,997,232	+		GFF3956	0.15	-1.3
3,997,247	-		GFF3956	0.15	+0.6
3,997,248	+		GFF3956	0.15	-0.1
3,997,255	+		GFF3956	0.16	+1.2
3,997,263	-		GFF3956	0.16	+0.0
3,997,265	+		GFF3956	0.16	-1.3
3,997,265	+		GFF3956	0.16	-0.4
3,997,265	+		GFF3956	0.16	-1.2
3,997,273	-		GFF3956	0.16	-0.1
3,997,280	-		GFF3956	0.17	-0.7